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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 717, 938 |
| AccB1I | GGYRCC | 1 cut(s) | 808 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 753 |
| AciI | CCGC | 1 cut(s) | 319 |
| AclWI | GGATC | 4 cut(s) | 2, 185, 415, 665 |
| AcsI | RAATTY | 3 cut(s) | 23, 385, 600 |
| AcuI | CTGAAG | 4 cut(s) | 200, 236, 807, 984 |
| AcvI | CACGTG | 2 cut(s) | 683, 701 |
| AdeI | CACNNNGTG | 1 cut(s) | 701 |
| AfaI | GTAC | 2 cut(s) | 56, 212 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 205, 306, 753 |
| AflIII | ACRYGT | 1 cut(s) | 377 |
| AgsI | TTSAA | 4 cut(s) | 223, 352, 568, 964 |
| AjiI | CACGTC | 2 cut(s) | 380, 665 |
| AjnI | CCWGG | 1 cut(s) | 972 |
| AluBI | AGCT | 3 cut(s) | 520, 842, 905 |
| AluI | AGCT | 3 cut(s) | 520, 842, 905 |
| Alw26I | GTCTC | 2 cut(s) | 374, 732 |
| AlwI | GGATC | 4 cut(s) | 2, 185, 415, 665 |
| AoxI | GGCC | 3 cut(s) | 581, 730, 775 |
| ApeKI | GCWGC | 1 cut(s) | 863 |
| ApoI | RAATTY | 3 cut(s) | 23, 385, 600 |
| AspLEI | GCGC | 1 cut(s) | 759 |
| AspS9I | GGNCC | 2 cut(s) | 730, 776 |
| BaeGI | GKGCMC | 1 cut(s) | 811 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BanI | GGYRCC | 1 cut(s) | 808 |
| BbrPI | CACGTG | 2 cut(s) | 683, 701 |
| BbsI | GAAGAC | 2 cut(s) | 230, 434 |
| BbvI | GCAGC | 1 cut(s) | 875 |
| BccI | CCATC | 1 cut(s) | 758 |
| BceAI | ACGGC | 1 cut(s) | 717 |
| BciT130I | CCWGG | 1 cut(s) | 974 |
| BclI | TGATCA | 1 cut(s) | 522 |
| BcoDI | GTCTC | 2 cut(s) | 374, 732 |
| BfaI | CTAG | 5 cut(s) | 195, 464, 579, 780, 935 |
| BisI | GCNGC | 1 cut(s) | 864 |
| BlsI | GCNGC | 1 cut(s) | 865 |
| Bme1390I | CCNGG | 1 cut(s) | 974 |
| BmgBI | CACGTC | 2 cut(s) | 380, 665 |
| BmgT120I | GGNCC | 2 cut(s) | 730, 776 |
| BmiI | GGNNCC | 1 cut(s) | 810 |
| BmrFI | CCNGG | 1 cut(s) | 974 |
| BmsI | GCATC | 2 cut(s) | 235, 985 |
| BpiI | GAAGAC | 2 cut(s) | 230, 434 |
| BpmI | CTGGAG | 1 cut(s) | 503 |
| BpuEI | CTTGAG | 2 cut(s) | 71, 356 |
| BsaAI | YACGTR | 2 cut(s) | 683, 701 |
| BsaI | GGTCTC | 1 cut(s) | 732 |
| BsaJI | CCNNGG | 1 cut(s) | 606 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 205, 306, 753 |
| Bse1I | ACTGG | 2 cut(s) | 472, 584 |
| Bse3DI | GCAATG | 1 cut(s) | 853 |
| BseBI | CCWGG | 1 cut(s) | 974 |
| BseDI | CCNNGG | 1 cut(s) | 606 |
| BseGI | GGATG | 2 cut(s) | 250, 1000 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 205, 306, 753 |
| BseMI | GCAATG | 1 cut(s) | 853 |
| BseMII | CTCAG | 1 cut(s) | 534 |
| BseNI | ACTGG | 2 cut(s) | 472, 584 |
| BseSI | GKGCMC | 1 cut(s) | 811 |
| BseXI | GCAGC | 1 cut(s) | 875 |
| BsgI | GTGCAG | 1 cut(s) | 687 |
| BshFI | GGCC | 3 cut(s) | 583, 732, 777 |
| BshNI | GGYRCC | 1 cut(s) | 808 |
| BslFI | GGGAC | 3 cut(s) | 270, 604, 723 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 205, 306, 753 |
| BsmAI | GTCTC | 2 cut(s) | 374, 732 |
| BsmBI | CGTCTC | 1 cut(s) | 374 |
| BsmFI | GGGAC | 3 cut(s) | 270, 604, 723 |
| BsnI | GGCC | 3 cut(s) | 583, 732, 777 |
| Bso31I | GGTCTC | 1 cut(s) | 732 |
| Bsp1286I | GDGCHC | 1 cut(s) | 811 |
| Bsp143I | GATC | 5 cut(s) | 7, 190, 420, 522, 670 |
| BspACI | CCGC | 1 cut(s) | 319 |
| BspANI | GGCC | 3 cut(s) | 583, 732, 777 |
| BspCNI | CTCAG | 1 cut(s) | 535 |
| BspHI | TCATGA | 2 cut(s) | 274, 928 |
| BspLI | GGNNCC | 1 cut(s) | 810 |
| BspPI | GGATC | 4 cut(s) | 2, 185, 415, 665 |
| BspT107I | GGYRCC | 1 cut(s) | 808 |
| BspTNI | GGTCTC | 1 cut(s) | 732 |
| BsrDI | GCAATG | 1 cut(s) | 853 |
| BsrI | ACTGG | 2 cut(s) | 472, 584 |
| BssECI | CCNNGG | 1 cut(s) | 606 |
| BssMI | GATC | 5 cut(s) | 7, 190, 420, 522, 670 |
| Bst2UI | CCWGG | 1 cut(s) | 974 |
| Bst4CI | ACNGT | 2 cut(s) | 62, 301 |
| BstBAI | YACGTR | 2 cut(s) | 683, 701 |
| BstC8I | GCNNGC | 3 cut(s) | 323, 775, 844 |
| BstDEI | CTNAG | 3 cut(s) | 176, 543, 813 |
| BstF5I | GGATG | 2 cut(s) | 250, 1000 |
| BstHHI | GCGC | 1 cut(s) | 759 |
| BstKTI | GATC | 5 cut(s) | 10, 193, 423, 525, 673 |
| BstMAI | GTCTC | 2 cut(s) | 374, 732 |
| BstMBI | GATC | 5 cut(s) | 7, 190, 420, 522, 670 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 92 |
| BstNI | CCWGG | 1 cut(s) | 974 |
| BstSCI | CCNGG | 1 cut(s) | 972 |
| BstSLI | GKGCMC | 1 cut(s) | 811 |
| BstV1I | GCAGC | 1 cut(s) | 875 |
| BstV2I | GAAGAC | 2 cut(s) | 230, 434 |
| BstX2I | RGATCY | 1 cut(s) | 670 |
| BstYI | RGATCY | 1 cut(s) | 670 |
| BsuRI | GGCC | 3 cut(s) | 583, 732, 777 |
| BtrI | CACGTC | 2 cut(s) | 380, 665 |
| BtsCI | GGATG | 2 cut(s) | 250, 1000 |
| BtsIMutI | CAGTG | 1 cut(s) | 311 |
| Cac8I | GCNNGC | 3 cut(s) | 323, 775, 844 |
| CciI | TCATGA | 2 cut(s) | 274, 928 |
| CfoI | GCGC | 1 cut(s) | 759 |
| Cfr13I | GGNCC | 2 cut(s) | 730, 776 |
| Csp6I | GTAC | 2 cut(s) | 55, 211 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 748, 783 |
| CviAII | CATG | 5 cut(s) | 275, 788, 833, 855, 929 |
| CviQI | GTAC | 2 cut(s) | 55, 211 |
| DdeI | CTNAG | 3 cut(s) | 176, 543, 813 |
| DpnI | GATC | 5 cut(s) | 9, 192, 422, 524, 672 |
| DpnII | GATC | 5 cut(s) | 7, 190, 420, 522, 670 |
| DraIII | CACNNNGTG | 1 cut(s) | 701 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 717, 938 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 717, 938 |
| Eco31I | GGTCTC | 1 cut(s) | 732 |
| Eco57I | CTGAAG | 4 cut(s) | 200, 236, 807, 984 |
| Eco72I | CACGTG | 2 cut(s) | 683, 701 |
| EcoRII | CCWGG | 1 cut(s) | 972 |
| Esp3I | CGTCTC | 1 cut(s) | 374 |
| FaeI | CATG | 5 cut(s) | 278, 791, 836, 858, 932 |
| FaqI | GGGAC | 3 cut(s) | 270, 604, 723 |
| FatI | CATG | 5 cut(s) | 274, 787, 832, 854, 928 |
| FbaI | TGATCA | 1 cut(s) | 522 |
| Fnu4HI | GCNGC | 1 cut(s) | 864 |
| FokI | GGATG | 2 cut(s) | 257, 1007 |
| Fsp4HI | GCNGC | 1 cut(s) | 864 |
| FspBI | CTAG | 5 cut(s) | 195, 464, 579, 780, 935 |
| GlaI | GCGC | 1 cut(s) | 758 |
| GluI | GCNGC | 1 cut(s) | 864 |
| GsuI | CTGGAG | 1 cut(s) | 503 |
| HaeIII | GGCC | 3 cut(s) | 583, 732, 777 |
| HhaI | GCGC | 1 cut(s) | 759 |
| Hin1II | CATG | 5 cut(s) | 278, 791, 836, 858, 932 |
| Hin6I | GCGC | 1 cut(s) | 757 |
| HinP1I | GCGC | 1 cut(s) | 757 |
| HincII | GTYRAC | 1 cut(s) | 943 |
| HindII | GTYRAC | 1 cut(s) | 943 |
| HinfI | GANTC | 5 cut(s) | 38, 339, 430, 501, 887 |
| Hpy166II | GTNNAC | 1 cut(s) | 943 |
| Hpy188I | TCNGA | 3 cut(s) | 73, 607, 1003 |
| Hpy188III | TCNNGA | 4 cut(s) | 275, 373, 424, 929 |
| Hpy8I | GTNNAC | 1 cut(s) | 943 |
| HpyAV | CCTTC | 4 cut(s) | 224, 260, 831, 917 |
| HpyCH4III | ACNGT | 2 cut(s) | 62, 301 |
| HpyCH4IV | ACGT | 8 cut(s) | 202, 259, 367, 379, 664, 682, 700, 712 |
| HpyCH4V | TGCA | 7 cut(s) | 535, 650, 668, 695, 802, 863, 956 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 92 |
| HpyF3I | CTNAG | 3 cut(s) | 176, 543, 813 |
| HpySE526I | ACGT | 8 cut(s) | 202, 259, 367, 379, 664, 682, 700, 712 |
| Hsp92II | CATG | 5 cut(s) | 278, 791, 836, 858, 932 |
| HspAI | GCGC | 1 cut(s) | 757 |
| Ksp22I | TGATCA | 1 cut(s) | 522 |
| Kzo9I | GATC | 5 cut(s) | 7, 190, 420, 522, 670 |
| LmnI | GCTCC | 2 cut(s) | 291, 988 |
| Lsp1109I | GCAGC | 1 cut(s) | 875 |
| LweI | GCATC | 2 cut(s) | 235, 985 |
| MaeI | CTAG | 5 cut(s) | 195, 464, 579, 780, 935 |
| MaeII | ACGT | 8 cut(s) | 202, 259, 367, 379, 664, 682, 700, 712 |
| MaeIII | GTNAC | 1 cut(s) | 363 |
| MalI | GATC | 5 cut(s) | 9, 192, 422, 524, 672 |
| MboI | GATC | 5 cut(s) | 7, 190, 420, 522, 670 |
| MboII | GAAGA | 5 cut(s) | 235, 422, 439, 929, 932 |
| MflI | RGATCY | 1 cut(s) | 670 |
| MhlI | GDGCHC | 1 cut(s) | 811 |
| MluCI | AATT | 5 cut(s) | 23, 385, 456, 600, 613 |
| MlyI | GAGTC | 4 cut(s) | 32, 348, 424, 896 |
| MmeI | TCCRAC | 2 cut(s) | 35, 640 |
| MnlI | CCTC | 6 cut(s) | 540, 550, 601, 753, 870, 956 |
| MseI | TTAA | 3 cut(s) | 153, 167, 513 |
| MspR9I | CCNGG | 1 cut(s) | 974 |
| MvaI | CCWGG | 1 cut(s) | 974 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 92 |
| NdeII | GATC | 5 cut(s) | 7, 190, 420, 522, 670 |
| NlaIII | CATG | 5 cut(s) | 278, 791, 836, 858, 932 |
| NlaIV | GGNNCC | 1 cut(s) | 810 |
| PagI | TCATGA | 2 cut(s) | 274, 928 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 718 |
| PfeI | GAWTC | 1 cut(s) | 501 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 753 |
| PkrI | GCNGC | 1 cut(s) | 865 |
| PleI | GAGTC | 4 cut(s) | 32, 347, 424, 895 |
| PmaCI | CACGTG | 2 cut(s) | 683, 701 |
| PmlI | CACGTG | 2 cut(s) | 683, 701 |
| PpsI | GAGTC | 4 cut(s) | 32, 347, 424, 895 |
| Ppu21I | YACGTR | 2 cut(s) | 683, 701 |
| Psp6I | CCWGG | 1 cut(s) | 972 |
| PspCI | CACGTG | 2 cut(s) | 683, 701 |
| PspGI | CCWGG | 1 cut(s) | 972 |
| PspN4I | GGNNCC | 1 cut(s) | 810 |
| PspPI | GGNCC | 2 cut(s) | 730, 776 |
| PsuI | RGATCY | 1 cut(s) | 670 |
| RsaI | GTAC | 2 cut(s) | 56, 212 |
| RsaNI | GTAC | 2 cut(s) | 55, 211 |
| SaqAI | TTAA | 3 cut(s) | 153, 167, 513 |
| SatI | GCNGC | 1 cut(s) | 864 |
| Sau3AI | GATC | 5 cut(s) | 7, 190, 420, 522, 670 |
| Sau96I | GGNCC | 2 cut(s) | 730, 776 |
| SchI | GAGTC | 4 cut(s) | 32, 348, 424, 896 |
| ScrFI | CCNGG | 1 cut(s) | 974 |
| SduI | GDGCHC | 1 cut(s) | 811 |
| SfaNI | GCATC | 2 cut(s) | 235, 985 |
| SmlI | CTYRAG | 2 cut(s) | 50, 371 |
| SmoI | CTYRAG | 2 cut(s) | 50, 371 |
| Sse9I | AATT | 5 cut(s) | 23, 385, 456, 600, 613 |
| SsiI | CCGC | 1 cut(s) | 319 |
| SspMI | CTAG | 5 cut(s) | 195, 464, 579, 780, 935 |
| StyD4I | CCNGG | 1 cut(s) | 972 |
| TaaI | ACNGT | 2 cut(s) | 62, 301 |
| TaiI | ACGT | 8 cut(s) | 205, 262, 370, 382, 667, 685, 703, 715 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 5 cut(s) | 23, 385, 456, 600, 613 |
| TfiI | GAWTC | 1 cut(s) | 501 |
| Tru1I | TTAA | 3 cut(s) | 153, 167, 513 |
| Tru9I | TTAA | 3 cut(s) | 153, 167, 513 |
| TscAI | CASTG | 1 cut(s) | 311 |
| TseI | GCWGC | 1 cut(s) | 863 |
| TspDTI | ATGAA | 4 cut(s) | 150, 263, 327, 864 |
| TspGWI | ACGGA | 1 cut(s) | 975 |
| TspRI | CASTG | 1 cut(s) | 311 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 753 |
| XapI | RAATTY | 3 cut(s) | 23, 385, 600 |
| XspI | CTAG | 5 cut(s) | 195, 464, 579, 780, 935 |