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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 625 |
| AciI | CCGC | 2 cut(s) | 202, 425 |
| AclWI | GGATC | 2 cut(s) | 2, 548 |
| AcsI | RAATTY | 2 cut(s) | 23, 483 |
| AcuI | CTGAAG | 1 cut(s) | 318 |
| AdeI | CACNNNGTG | 1 cut(s) | 584 |
| AfaI | GTAC | 2 cut(s) | 56, 475 |
| AfeI | AGCGCT | 1 cut(s) | 339 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 64 |
| AflIII | ACRYGT | 1 cut(s) | 547 |
| AgsI | TTSAA | 3 cut(s) | 235, 397, 451 |
| AjiI | CACGTC | 3 cut(s) | 263, 548, 596 |
| AjnI | CCWGG | 1 cut(s) | 461 |
| AluBI | AGCT | 1 cut(s) | 403 |
| AluI | AGCT | 1 cut(s) | 403 |
| Alw26I | GTCTC | 1 cut(s) | 269 |
| AlwI | GGATC | 2 cut(s) | 2, 548 |
| Ama87I | CYCGRG | 2 cut(s) | 365, 488 |
| Aor51HI | AGCGCT | 1 cut(s) | 339 |
| AoxI | GGCC | 1 cut(s) | 464 |
| ApoI | RAATTY | 2 cut(s) | 23, 483 |
| AspLEI | GCGC | 1 cut(s) | 340 |
| AspS9I | GGNCC | 2 cut(s) | 352, 465 |
| AsuHPI | GGTGA | 1 cut(s) | 160 |
| AvaI | CYCGRG | 2 cut(s) | 365, 488 |
| AvaII | GGWCC | 1 cut(s) | 352 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BanI | GGYRCC | 1 cut(s) | 625 |
| BccI | CCATC | 1 cut(s) | 66 |
| BciT130I | CCWGG | 1 cut(s) | 463 |
| BclI | TGATCA | 1 cut(s) | 405 |
| BcoDI | GTCTC | 1 cut(s) | 269 |
| BfoI | RGCGCY | 1 cut(s) | 341 |
| Bme1390I | CCNGG | 1 cut(s) | 463 |
| Bme18I | GGWCC | 1 cut(s) | 352 |
| BmeT110I | CYCGRG | 2 cut(s) | 365, 488 |
| BmgBI | CACGTC | 3 cut(s) | 263, 548, 596 |
| BmgT120I | GGNCC | 2 cut(s) | 352, 465 |
| BmiI | GGNNCC | 1 cut(s) | 627 |
| BmrFI | CCNGG | 1 cut(s) | 463 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaAI | YACGTR | 1 cut(s) | 566 |
| BsaJI | CCNNGG | 1 cut(s) | 489 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 64 |
| Bse1I | ACTGG | 2 cut(s) | 184, 355 |
| Bse3DI | GCAATG | 1 cut(s) | 463 |
| BseBI | CCWGG | 1 cut(s) | 463 |
| BseDI | CCNNGG | 1 cut(s) | 489 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 64 |
| BseMI | GCAATG | 1 cut(s) | 463 |
| BseMII | CTCAG | 2 cut(s) | 54, 164 |
| BseNI | ACTGG | 2 cut(s) | 184, 355 |
| BshFI | GGCC | 1 cut(s) | 466 |
| BshNI | GGYRCC | 1 cut(s) | 625 |
| BsiHKCI | CYCGRG | 2 cut(s) | 365, 488 |
| BslFI | GGGAC | 1 cut(s) | 606 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 64 |
| BsmAI | GTCTC | 1 cut(s) | 269 |
| BsmBI | CGTCTC | 1 cut(s) | 269 |
| BsmFI | GGGAC | 1 cut(s) | 606 |
| BsnI | GGCC | 1 cut(s) | 466 |
| BsoBI | CYCGRG | 2 cut(s) | 365, 488 |
| Bsp143I | GATC | 4 cut(s) | 7, 303, 405, 553 |
| BspACI | CCGC | 2 cut(s) | 202, 425 |
| BspANI | GGCC | 1 cut(s) | 466 |
| BspCNI | CTCAG | 2 cut(s) | 53, 165 |
| BspLI | GGNNCC | 1 cut(s) | 627 |
| BspPI | GGATC | 2 cut(s) | 2, 548 |
| BspT107I | GGYRCC | 1 cut(s) | 625 |
| BsrDI | GCAATG | 1 cut(s) | 463 |
| BsrI | ACTGG | 2 cut(s) | 184, 355 |
| BssECI | CCNNGG | 1 cut(s) | 489 |
| BssMI | GATC | 4 cut(s) | 7, 303, 405, 553 |
| Bst2UI | CCWGG | 1 cut(s) | 463 |
| BstBAI | YACGTR | 1 cut(s) | 566 |
| BstC8I | GCNNGC | 1 cut(s) | 206 |
| BstDEI | CTNAG | 3 cut(s) | 40, 173, 630 |
| BstH2I | RGCGCY | 1 cut(s) | 341 |
| BstHHI | GCGC | 1 cut(s) | 340 |
| BstKTI | GATC | 4 cut(s) | 10, 306, 408, 556 |
| BstMAI | GTCTC | 1 cut(s) | 269 |
| BstMBI | GATC | 4 cut(s) | 7, 303, 405, 553 |
| BstNI | CCWGG | 1 cut(s) | 463 |
| BstSCI | CCNGG | 1 cut(s) | 461 |
| BsuRI | GGCC | 1 cut(s) | 466 |
| BtrI | CACGTC | 3 cut(s) | 263, 548, 596 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 1 cut(s) | 105 |
| Cac8I | GCNNGC | 1 cut(s) | 206 |
| CfoI | GCGC | 1 cut(s) | 340 |
| Cfr13I | GGNCC | 2 cut(s) | 352, 465 |
| Csp6I | GTAC | 2 cut(s) | 55, 474 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 256, 291 |
| CviJI | RGCY | 5 cut(s) | 364, 403, 411, 466, 494 |
| CviKI_1 | RGCY | 5 cut(s) | 364, 403, 411, 466, 494 |
| CviQI | GTAC | 2 cut(s) | 55, 474 |
| DdeI | CTNAG | 3 cut(s) | 40, 173, 630 |
| DpnI | GATC | 4 cut(s) | 9, 305, 407, 555 |
| DpnII | GATC | 4 cut(s) | 7, 303, 405, 553 |
| DraIII | CACNNNGTG | 1 cut(s) | 584 |
| EciI | GGCGGA | 1 cut(s) | 440 |
| Eco32I | GATATC | 1 cut(s) | 244 |
| Eco47I | GGWCC | 1 cut(s) | 352 |
| Eco47III | AGCGCT | 1 cut(s) | 339 |
| Eco57I | CTGAAG | 1 cut(s) | 318 |
| Eco88I | CYCGRG | 2 cut(s) | 365, 488 |
| EcoRII | CCWGG | 1 cut(s) | 461 |
| EcoRV | GATATC | 1 cut(s) | 244 |
| Esp3I | CGTCTC | 1 cut(s) | 269 |
| FaiI | YATR | 7 cut(s) | 290, 302, 344, 360, 372, 435, 501 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 230, 262 |
| FaqI | GGGAC | 1 cut(s) | 606 |
| FbaI | TGATCA | 1 cut(s) | 405 |
| GlaI | GCGC | 1 cut(s) | 339 |
| HaeII | RGCGCY | 1 cut(s) | 341 |
| HaeIII | GGCC | 1 cut(s) | 466 |
| HhaI | GCGC | 1 cut(s) | 340 |
| Hin6I | GCGC | 1 cut(s) | 338 |
| HinP1I | GCGC | 1 cut(s) | 338 |
| HinfI | GANTC | 3 cut(s) | 38, 198, 384 |
| HphI | GGTGA | 1 cut(s) | 160 |
| Hpy188I | TCNGA | 3 cut(s) | 43, 174, 352 |
| Hpy188III | TCNNGA | 2 cut(s) | 448, 488 |
| HpyAV | CCTTC | 3 cut(s) | 38, 273, 403 |
| HpyCH4IV | ACGT | 4 cut(s) | 262, 547, 565, 595 |
| HpyCH4V | TGCA | 4 cut(s) | 418, 533, 578, 619 |
| HpyF3I | CTNAG | 3 cut(s) | 40, 173, 630 |
| HpySE526I | ACGT | 4 cut(s) | 262, 547, 565, 595 |
| HspAI | GCGC | 1 cut(s) | 338 |
| Ksp22I | TGATCA | 1 cut(s) | 405 |
| Kzo9I | GATC | 4 cut(s) | 7, 303, 405, 553 |
| LpnPI | CCDG | 5 cut(s) | 33, 165, 368, 448, 475 |
| MaeII | ACGT | 4 cut(s) | 262, 547, 565, 595 |
| MalI | GATC | 4 cut(s) | 9, 305, 407, 555 |
| MboI | GATC | 4 cut(s) | 7, 303, 405, 553 |
| MboII | GAAGA | 1 cut(s) | 305 |
| MluCI | AATT | 4 cut(s) | 23, 268, 483, 496 |
| MlyI | GAGTC | 1 cut(s) | 32 |
| MmeI | TCCRAC | 1 cut(s) | 35 |
| MnlI | CCTC | 3 cut(s) | 433, 484, 593 |
| MseI | TTAA | 2 cut(s) | 144, 164 |
| MspR9I | CCNGG | 1 cut(s) | 463 |
| MvaI | CCWGG | 1 cut(s) | 463 |
| NdeII | GATC | 4 cut(s) | 7, 303, 405, 553 |
| NlaIV | GGNNCC | 1 cut(s) | 627 |
| PaeR7I | CTCGAG | 1 cut(s) | 365 |
| PfeI | GAWTC | 2 cut(s) | 198, 384 |
| PleI | GAGTC | 1 cut(s) | 32 |
| PpsI | GAGTC | 1 cut(s) | 32 |
| Ppu21I | YACGTR | 1 cut(s) | 566 |
| Psp6I | CCWGG | 1 cut(s) | 461 |
| PspGI | CCWGG | 1 cut(s) | 461 |
| PspN4I | GGNNCC | 1 cut(s) | 627 |
| PspPI | GGNCC | 2 cut(s) | 352, 465 |
| PspXI | VCTCGAGB | 1 cut(s) | 365 |
| RsaI | GTAC | 2 cut(s) | 56, 475 |
| RsaNI | GTAC | 2 cut(s) | 55, 474 |
| SaqAI | TTAA | 2 cut(s) | 144, 164 |
| Sau3AI | GATC | 4 cut(s) | 7, 303, 405, 553 |
| Sau96I | GGNCC | 2 cut(s) | 352, 465 |
| SchI | GAGTC | 1 cut(s) | 32 |
| ScrFI | CCNGG | 1 cut(s) | 463 |
| Sfr274I | CTCGAG | 1 cut(s) | 365 |
| SinI | GGWCC | 1 cut(s) | 352 |
| SlaI | CTCGAG | 1 cut(s) | 365 |
| SmlI | CTYRAG | 2 cut(s) | 50, 365 |
| SmoI | CTYRAG | 2 cut(s) | 50, 365 |
| Sse9I | AATT | 4 cut(s) | 23, 268, 483, 496 |
| SsiI | CCGC | 2 cut(s) | 202, 425 |
| StyD4I | CCNGG | 1 cut(s) | 461 |
| TaiI | ACGT | 4 cut(s) | 265, 550, 568, 598 |
| TaqI | TCGA | 2 cut(s) | 16, 366 |
| TasI | AATT | 4 cut(s) | 23, 268, 483, 496 |
| TfiI | GAWTC | 2 cut(s) | 198, 384 |
| Tru1I | TTAA | 2 cut(s) | 144, 164 |
| Tru9I | TTAA | 2 cut(s) | 144, 164 |
| TscAI | CASTG | 1 cut(s) | 112 |
| TspDTI | ATGAA | 1 cut(s) | 150 |
| TspRI | CASTG | 1 cut(s) | 112 |
| VpaK11BI | GGWCC | 1 cut(s) | 352 |
| XapI | RAATTY | 2 cut(s) | 23, 483 |
| XhoI | CTCGAG | 1 cut(s) | 365 |