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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 753 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 510 |
| AciI | CCGC | 1 cut(s) | 540 |
| AclWI | GGATC | 2 cut(s) | 172, 422 |
| AcsI | RAATTY | 3 cut(s) | 72, 357, 788 |
| AcuI | CTGAAG | 1 cut(s) | 564 |
| AcvI | CACGTG | 1 cut(s) | 440 |
| AcyI | GRCGYC | 1 cut(s) | 750 |
| AdeI | CACNNNGTG | 1 cut(s) | 724 |
| AfaI | GTAC | 2 cut(s) | 453, 644 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 510 |
| AflII | CTTAAG | 1 cut(s) | 7 |
| AflIII | ACRYGT | 2 cut(s) | 117, 421 |
| AgsI | TTSAA | 4 cut(s) | 109, 271, 325, 775 |
| AhlI | ACTAGT | 1 cut(s) | 220 |
| AjiI | CACGTC | 2 cut(s) | 137, 422 |
| Alw26I | GTCTC | 1 cut(s) | 143 |
| AlwI | GGATC | 2 cut(s) | 172, 422 |
| AoxI | GGCC | 3 cut(s) | 338, 487, 496 |
| ApoI | RAATTY | 3 cut(s) | 72, 357, 788 |
| AspS9I | GGNCC | 4 cut(s) | 339, 487, 497, 533 |
| AvaII | GGWCC | 1 cut(s) | 533 |
| BbrPI | CACGTG | 1 cut(s) | 440 |
| BbsI | GAAGAC | 2 cut(s) | 191, 741 |
| BccI | CCATC | 1 cut(s) | 515 |
| BceAI | ACGGC | 1 cut(s) | 474 |
| BclI | TGATCA | 1 cut(s) | 279 |
| BcoDI | GTCTC | 1 cut(s) | 143 |
| BcuI | ACTAGT | 1 cut(s) | 220 |
| BfaI | CTAG | 3 cut(s) | 221, 537, 812 |
| BfrI | CTTAAG | 1 cut(s) | 7 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 495 |
| Bme18I | GGWCC | 1 cut(s) | 533 |
| BmgBI | CACGTC | 2 cut(s) | 137, 422 |
| BmgT120I | GGNCC | 4 cut(s) | 339, 487, 497, 533 |
| BmsI | GCATC | 1 cut(s) | 796 |
| BpiI | GAAGAC | 2 cut(s) | 191, 741 |
| BpmI | CTGGAG | 1 cut(s) | 260 |
| BsaAI | YACGTR | 1 cut(s) | 440 |
| BsaHI | GRCGYC | 1 cut(s) | 750 |
| BsaJI | CCNNGG | 1 cut(s) | 490 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 510 |
| Bse1I | ACTGG | 1 cut(s) | 229 |
| BseDI | CCNNGG | 1 cut(s) | 490 |
| BseGI | GGATG | 1 cut(s) | 811 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 510 |
| BseMII | CTCAG | 1 cut(s) | 809 |
| BseNI | ACTGG | 1 cut(s) | 229 |
| BshFI | GGCC | 3 cut(s) | 340, 489, 498 |
| BslFI | GGGAC | 2 cut(s) | 26, 480 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 510 |
| BsmAI | GTCTC | 1 cut(s) | 143 |
| BsmBI | CGTCTC | 1 cut(s) | 143 |
| BsmFI | GGGAC | 2 cut(s) | 26, 480 |
| BsmI | GAATGC | 1 cut(s) | 26 |
| BsnI | GGCC | 3 cut(s) | 340, 489, 498 |
| Bsp143I | GATC | 4 cut(s) | 169, 177, 279, 427 |
| BspACI | CCGC | 1 cut(s) | 540 |
| BspANI | GGCC | 3 cut(s) | 340, 489, 498 |
| BspCNI | CTCAG | 1 cut(s) | 808 |
| BspHI | TCATGA | 1 cut(s) | 30 |
| BspPI | GGATC | 2 cut(s) | 172, 422 |
| BspTI | CTTAAG | 1 cut(s) | 7 |
| BsrI | ACTGG | 1 cut(s) | 229 |
| BssECI | CCNNGG | 1 cut(s) | 490 |
| BssMI | GATC | 4 cut(s) | 169, 177, 279, 427 |
| BssNI | GRCGYC | 1 cut(s) | 750 |
| Bst4CI | ACNGT | 1 cut(s) | 58 |
| BstACI | GRCGYC | 1 cut(s) | 750 |
| BstAFI | CTTAAG | 1 cut(s) | 7 |
| BstBAI | YACGTR | 1 cut(s) | 440 |
| BstC8I | GCNNGC | 1 cut(s) | 80 |
| BstDEI | CTNAG | 2 cut(s) | 570, 795 |
| BstDSI | CCRYGG | 1 cut(s) | 490 |
| BstF5I | GGATG | 1 cut(s) | 811 |
| BstKTI | GATC | 4 cut(s) | 172, 180, 282, 430 |
| BstMAI | GTCTC | 1 cut(s) | 143 |
| BstMBI | GATC | 4 cut(s) | 169, 177, 279, 427 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 495 |
| BstNSI | RCATGY | 1 cut(s) | 121 |
| BstV2I | GAAGAC | 2 cut(s) | 191, 741 |
| BsuRI | GGCC | 3 cut(s) | 340, 489, 498 |
| BtgI | CCRYGG | 1 cut(s) | 490 |
| BtrI | CACGTC | 2 cut(s) | 137, 422 |
| BtsCI | GGATG | 1 cut(s) | 811 |
| BtsIMutI | CAGTG | 1 cut(s) | 68 |
| Cac8I | GCNNGC | 1 cut(s) | 80 |
| CciI | TCATGA | 1 cut(s) | 30 |
| Cfr13I | GGNCC | 4 cut(s) | 339, 487, 497, 533 |
| Csp6I | GTAC | 2 cut(s) | 452, 643 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 130, 165 |
| CviAII | CATG | 5 cut(s) | 31, 118, 458, 470, 612 |
| CviJI | RGCY | 6 cut(s) | 238, 340, 368, 489, 498, 677 |
| CviKI_1 | RGCY | 6 cut(s) | 238, 340, 368, 489, 498, 677 |
| CviQI | GTAC | 2 cut(s) | 452, 643 |
| DdeI | CTNAG | 2 cut(s) | 570, 795 |
| DpnI | GATC | 4 cut(s) | 171, 179, 281, 429 |
| DpnII | GATC | 4 cut(s) | 169, 177, 279, 427 |
| DraIII | CACNNNGTG | 1 cut(s) | 724 |
| Eco47I | GGWCC | 1 cut(s) | 533 |
| Eco57I | CTGAAG | 1 cut(s) | 564 |
| Eco72I | CACGTG | 1 cut(s) | 440 |
| EcoO109I | RGGNCCY | 1 cut(s) | 497 |
| Esp3I | CGTCTC | 1 cut(s) | 143 |
| FaeI | CATG | 5 cut(s) | 34, 121, 461, 473, 615 |
| FaqI | GGGAC | 2 cut(s) | 26, 480 |
| FatI | CATG | 5 cut(s) | 30, 117, 457, 469, 611 |
| FauNDI | CATATG | 1 cut(s) | 174 |
| FbaI | TGATCA | 1 cut(s) | 279 |
| FokI | GGATG | 1 cut(s) | 818 |
| FspBI | CTAG | 3 cut(s) | 221, 537, 812 |
| GsuI | CTGGAG | 1 cut(s) | 260 |
| HaeIII | GGCC | 3 cut(s) | 340, 489, 498 |
| Hin1I | GRCGYC | 1 cut(s) | 750 |
| Hin1II | CATG | 5 cut(s) | 34, 121, 461, 473, 615 |
| HincII | GTYRAC | 1 cut(s) | 754 |
| HindII | GTYRAC | 1 cut(s) | 754 |
| HinfI | GANTC | 3 cut(s) | 187, 258, 574 |
| Hpy166II | GTNNAC | 2 cut(s) | 226, 754 |
| Hpy188I | TCNGA | 1 cut(s) | 364 |
| Hpy188III | TCNNGA | 3 cut(s) | 31, 181, 812 |
| Hpy8I | GTNNAC | 2 cut(s) | 226, 754 |
| HpyAV | CCTTC | 3 cut(s) | 147, 277, 588 |
| HpyCH4III | ACNGT | 1 cut(s) | 58 |
| HpyCH4IV | ACGT | 5 cut(s) | 15, 136, 421, 439, 750 |
| HpyCH4V | TGCA | 5 cut(s) | 124, 292, 407, 559, 767 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 495 |
| HpyF3I | CTNAG | 2 cut(s) | 570, 795 |
| HpySE526I | ACGT | 5 cut(s) | 15, 136, 421, 439, 750 |
| Hsp92I | GRCGYC | 1 cut(s) | 750 |
| Hsp92II | CATG | 5 cut(s) | 34, 121, 461, 473, 615 |
| Ksp22I | TGATCA | 1 cut(s) | 279 |
| Kzo9I | GATC | 4 cut(s) | 169, 177, 279, 427 |
| LmnI | GCTCC | 3 cut(s) | 23, 47, 513 |
| LpnPI | CCDG | 6 cut(s) | 194, 224, 242, 322, 516, 759 |
| LweI | GCATC | 1 cut(s) | 796 |
| MaeI | CTAG | 3 cut(s) | 221, 537, 812 |
| MaeII | ACGT | 5 cut(s) | 15, 136, 421, 439, 750 |
| MaeIII | GTNAC | 2 cut(s) | 662, 716 |
| MalI | GATC | 4 cut(s) | 171, 179, 281, 429 |
| MboI | GATC | 4 cut(s) | 169, 177, 279, 427 |
| MboII | GAAGA | 5 cut(s) | 179, 196, 740, 743, 746 |
| MfeI | CAATTG | 1 cut(s) | 762 |
| MluCI | AATT | 5 cut(s) | 72, 357, 370, 762, 788 |
| MlyI | GAGTC | 1 cut(s) | 181 |
| MnlI | CCTC | 6 cut(s) | 297, 307, 358, 488, 510, 706 |
| MseI | TTAA | 1 cut(s) | 8 |
| MslI | CAYNNNNRTG | 1 cut(s) | 474 |
| MspCI | CTTAAG | 1 cut(s) | 7 |
| MunI | CAATTG | 1 cut(s) | 762 |
| Mva1269I | GAATGC | 1 cut(s) | 26 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 495 |
| NdeI | CATATG | 1 cut(s) | 174 |
| NdeII | GATC | 4 cut(s) | 169, 177, 279, 427 |
| NlaIII | CATG | 5 cut(s) | 34, 121, 461, 473, 615 |
| NmuCI | GTSAC | 1 cut(s) | 716 |
| NspI | RCATGY | 1 cut(s) | 121 |
| PagI | TCATGA | 1 cut(s) | 30 |
| PciI | ACATGT | 1 cut(s) | 117 |
| PctI | GAATGC | 1 cut(s) | 26 |
| PfeI | GAWTC | 2 cut(s) | 258, 574 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 510 |
| PleI | GAGTC | 1 cut(s) | 181 |
| PmaCI | CACGTG | 1 cut(s) | 440 |
| PmlI | CACGTG | 1 cut(s) | 440 |
| PpsI | GAGTC | 1 cut(s) | 181 |
| Ppu21I | YACGTR | 1 cut(s) | 440 |
| PscI | ACATGT | 1 cut(s) | 117 |
| PspCI | CACGTG | 1 cut(s) | 440 |
| PspPI | GGNCC | 4 cut(s) | 339, 487, 497, 533 |
| RsaI | GTAC | 2 cut(s) | 453, 644 |
| RsaNI | GTAC | 2 cut(s) | 452, 643 |
| RseI | CAYNNNNRTG | 1 cut(s) | 474 |
| SaqAI | TTAA | 1 cut(s) | 8 |
| Sau3AI | GATC | 4 cut(s) | 169, 177, 279, 427 |
| Sau96I | GGNCC | 4 cut(s) | 339, 487, 497, 533 |
| SchI | GAGTC | 1 cut(s) | 181 |
| SfaNI | GCATC | 1 cut(s) | 796 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 495 |
| SinI | GGWCC | 1 cut(s) | 533 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 474 |
| SmlI | CTYRAG | 1 cut(s) | 7 |
| SmoI | CTYRAG | 1 cut(s) | 7 |
| SpeI | ACTAGT | 1 cut(s) | 220 |
| Sse9I | AATT | 5 cut(s) | 72, 357, 370, 762, 788 |
| SsiI | CCGC | 1 cut(s) | 540 |
| SspMI | CTAG | 3 cut(s) | 221, 537, 812 |
| TaaI | ACNGT | 1 cut(s) | 58 |
| TaiI | ACGT | 5 cut(s) | 18, 139, 424, 442, 753 |
| TasI | AATT | 5 cut(s) | 72, 357, 370, 762, 788 |
| TfiI | GAWTC | 2 cut(s) | 258, 574 |
| Tru1I | TTAA | 1 cut(s) | 8 |
| Tru9I | TTAA | 1 cut(s) | 8 |
| TscAI | CASTG | 1 cut(s) | 68 |
| TseFI | GTSAC | 1 cut(s) | 716 |
| Tsp45I | GTSAC | 1 cut(s) | 716 |
| TspDTI | ATGAA | 2 cut(s) | 19, 84 |
| TspRI | CASTG | 1 cut(s) | 68 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 510 |
| Vha464I | CTTAAG | 1 cut(s) | 7 |
| VpaK11BI | GGWCC | 1 cut(s) | 533 |
| XapI | RAATTY | 3 cut(s) | 72, 357, 788 |
| XbaI | TCTAGA | 1 cut(s) | 811 |
| XceI | RCATGY | 1 cut(s) | 121 |
| XspI | CTAG | 3 cut(s) | 221, 537, 812 |
| ZraI | GACGTC | 1 cut(s) | 751 |