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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 414 |
| AciI | CCGC | 1 cut(s) | 244 |
| AclWI | GGATC | 3 cut(s) | 110, 473, 534 |
| AcsI | RAATTY | 1 cut(s) | 408 |
| AcuI | CTGAAG | 1 cut(s) | 125 |
| AcvI | CACGTG | 2 cut(s) | 491, 509 |
| AdeI | CACNNNGTG | 1 cut(s) | 509 |
| AfaI | GTAC | 3 cut(s) | 137, 475, 601 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 130, 220, 459, 575 |
| AflII | CTTAAG | 1 cut(s) | 295 |
| AflIII | ACRYGT | 1 cut(s) | 285 |
| AgsI | TTSAA | 2 cut(s) | 148, 277 |
| AjiI | CACGTC | 1 cut(s) | 305 |
| AjnI | CCWGG | 1 cut(s) | 214 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 210, 242 |
| AluBI | AGCT | 1 cut(s) | 380 |
| AluI | AGCT | 1 cut(s) | 380 |
| AlwI | GGATC | 3 cut(s) | 110, 473, 534 |
| ApoI | RAATTY | 1 cut(s) | 408 |
| AspLEI | GCGC | 1 cut(s) | 294 |
| AsuHPI | GGTGA | 1 cut(s) | 88 |
| BaeGI | GKGCMC | 1 cut(s) | 304 |
| BbrPI | CACGTG | 2 cut(s) | 491, 509 |
| BbsI | GAAGAC | 1 cut(s) | 155 |
| BciT130I | CCWGG | 1 cut(s) | 216 |
| BfaI | CTAG | 2 cut(s) | 120, 389 |
| BfrI | CTTAAG | 1 cut(s) | 295 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 17 |
| Bme1390I | CCNGG | 1 cut(s) | 216 |
| BmgBI | CACGTC | 1 cut(s) | 305 |
| BmrFI | CCNGG | 1 cut(s) | 216 |
| BmsI | GCATC | 3 cut(s) | 76, 160, 531 |
| BpiI | GAAGAC | 1 cut(s) | 155 |
| BsaAI | YACGTR | 2 cut(s) | 491, 509 |
| BsaJI | CCNNGG | 1 cut(s) | 214 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 130, 220, 459, 575 |
| Bse1I | ACTGG | 2 cut(s) | 225, 569 |
| BseBI | CCWGG | 1 cut(s) | 216 |
| BseDI | CCNNGG | 1 cut(s) | 214 |
| BseGI | GGATG | 1 cut(s) | 175 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 130, 220, 459, 575 |
| BseMII | CTCAG | 1 cut(s) | 92 |
| BseNI | ACTGG | 2 cut(s) | 225, 569 |
| BseSI | GKGCMC | 1 cut(s) | 304 |
| BseYI | CCCAGC | 1 cut(s) | 129 |
| Bsh1236I | CGCG | 1 cut(s) | 414 |
| BslFI | GGGAC | 1 cut(s) | 531 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 130, 220, 459, 575 |
| BsmFI | GGGAC | 1 cut(s) | 531 |
| Bsp1286I | GDGCHC | 1 cut(s) | 304 |
| Bsp143I | GATC | 3 cut(s) | 115, 478, 526 |
| Bsp68I | TCGCGA | 1 cut(s) | 414 |
| BspACI | CCGC | 1 cut(s) | 244 |
| BspCNI | CTCAG | 1 cut(s) | 93 |
| BspFNI | CGCG | 1 cut(s) | 414 |
| BspPI | GGATC | 3 cut(s) | 110, 473, 534 |
| BspTI | CTTAAG | 1 cut(s) | 295 |
| BsrI | ACTGG | 2 cut(s) | 225, 569 |
| BssECI | CCNNGG | 1 cut(s) | 214 |
| BssMI | GATC | 3 cut(s) | 115, 478, 526 |
| Bst2UI | CCWGG | 1 cut(s) | 216 |
| Bst4CI | ACNGT | 1 cut(s) | 165 |
| BstAFI | CTTAAG | 1 cut(s) | 295 |
| BstBAI | YACGTR | 2 cut(s) | 491, 509 |
| BstC8I | GCNNGC | 1 cut(s) | 248 |
| BstDEI | CTNAG | 1 cut(s) | 101 |
| BstF5I | GGATG | 1 cut(s) | 175 |
| BstFNI | CGCG | 1 cut(s) | 414 |
| BstHHI | GCGC | 1 cut(s) | 294 |
| BstKTI | GATC | 3 cut(s) | 118, 481, 529 |
| BstMBI | GATC | 3 cut(s) | 115, 478, 526 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 17 |
| BstNI | CCWGG | 1 cut(s) | 216 |
| BstNSI | RCATGY | 1 cut(s) | 289 |
| BstSCI | CCNGG | 1 cut(s) | 214 |
| BstSLI | GKGCMC | 1 cut(s) | 304 |
| BstUI | CGCG | 1 cut(s) | 414 |
| BstV2I | GAAGAC | 1 cut(s) | 155 |
| BtrI | CACGTC | 1 cut(s) | 305 |
| BtsCI | GGATG | 1 cut(s) | 175 |
| BtsI | GCAGTG | 1 cut(s) | 30 |
| BtsIMutI | CAGTG | 3 cut(s) | 30, 161, 236 |
| BtuMI | TCGCGA | 1 cut(s) | 414 |
| Cac8I | GCNNGC | 1 cut(s) | 248 |
| CfoI | GCGC | 1 cut(s) | 294 |
| Csp6I | GTAC | 3 cut(s) | 136, 474, 600 |
| CviAII | CATG | 2 cut(s) | 286, 521 |
| CviJI | RGCY | 4 cut(s) | 123, 224, 380, 419 |
| CviKI_1 | RGCY | 4 cut(s) | 123, 224, 380, 419 |
| CviQI | GTAC | 3 cut(s) | 136, 474, 600 |
| DdeI | CTNAG | 1 cut(s) | 101 |
| DpnI | GATC | 3 cut(s) | 117, 480, 528 |
| DpnII | GATC | 3 cut(s) | 115, 478, 526 |
| DraIII | CACNNNGTG | 1 cut(s) | 509 |
| Eco57I | CTGAAG | 1 cut(s) | 125 |
| Eco72I | CACGTG | 2 cut(s) | 491, 509 |
| EcoRII | CCWGG | 1 cut(s) | 214 |
| FaeI | CATG | 2 cut(s) | 289, 524 |
| FaiI | YATR | 8 cut(s) | 111, 258, 287, 344, 386, 426, 522, 575 |
| FaqI | GGGAC | 1 cut(s) | 531 |
| FatI | CATG | 2 cut(s) | 285, 520 |
| FokI | GGATG | 1 cut(s) | 182 |
| FspBI | CTAG | 2 cut(s) | 120, 389 |
| GlaI | GCGC | 1 cut(s) | 293 |
| GsaI | CCCAGC | 1 cut(s) | 133 |
| HhaI | GCGC | 1 cut(s) | 294 |
| Hin1II | CATG | 2 cut(s) | 289, 524 |
| Hin6I | GCGC | 1 cut(s) | 292 |
| HinP1I | GCGC | 1 cut(s) | 292 |
| HincII | GTYRAC | 1 cut(s) | 559 |
| HindII | GTYRAC | 1 cut(s) | 559 |
| HinfI | GANTC | 3 cut(s) | 240, 355, 584 |
| HphI | GGTGA | 1 cut(s) | 88 |
| Hpy166II | GTNNAC | 1 cut(s) | 559 |
| Hpy188I | TCNGA | 1 cut(s) | 102 |
| Hpy188III | TCNNGA | 2 cut(s) | 200, 413 |
| Hpy8I | GTNNAC | 1 cut(s) | 559 |
| HpyAV | CCTTC | 3 cut(s) | 149, 283, 315 |
| HpyCH4III | ACNGT | 1 cut(s) | 165 |
| HpyCH4IV | ACGT | 5 cut(s) | 184, 304, 472, 490, 508 |
| HpyCH4V | TGCA | 3 cut(s) | 458, 503, 544 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 17 |
| HpyF3I | CTNAG | 1 cut(s) | 101 |
| HpySE526I | ACGT | 5 cut(s) | 184, 304, 472, 490, 508 |
| Hsp92II | CATG | 2 cut(s) | 289, 524 |
| HspAI | GCGC | 1 cut(s) | 292 |
| Kzo9I | GATC | 3 cut(s) | 115, 478, 526 |
| LmnI | GCTCC | 1 cut(s) | 216 |
| LpnPI | CCDG | 6 cut(s) | 115, 201, 206, 228, 410, 582 |
| LweI | GCATC | 3 cut(s) | 76, 160, 531 |
| MaeI | CTAG | 2 cut(s) | 120, 389 |
| MaeII | ACGT | 5 cut(s) | 184, 304, 472, 490, 508 |
| MalI | GATC | 3 cut(s) | 117, 480, 528 |
| MboI | GATC | 3 cut(s) | 115, 478, 526 |
| MboII | GAAGA | 3 cut(s) | 35, 160, 347 |
| MhlI | GDGCHC | 1 cut(s) | 304 |
| MluCI | AATT | 5 cut(s) | 93, 310, 373, 408, 421 |
| MlyI | GAGTC | 1 cut(s) | 349 |
| MnlI | CCTC | 2 cut(s) | 96, 409 |
| MseI | TTAA | 4 cut(s) | 92, 177, 296, 309 |
| MspCI | CTTAAG | 1 cut(s) | 295 |
| MspR9I | CCNGG | 1 cut(s) | 216 |
| MvaI | CCWGG | 1 cut(s) | 216 |
| MvnI | CGCG | 1 cut(s) | 414 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 17 |
| NdeII | GATC | 3 cut(s) | 115, 478, 526 |
| NlaIII | CATG | 2 cut(s) | 289, 524 |
| NruI | TCGCGA | 1 cut(s) | 414 |
| NspI | RCATGY | 1 cut(s) | 289 |
| PciI | ACATGT | 1 cut(s) | 285 |
| PfeI | GAWTC | 2 cut(s) | 240, 584 |
| PleI | GAGTC | 1 cut(s) | 349 |
| PmaCI | CACGTG | 2 cut(s) | 491, 509 |
| PmlI | CACGTG | 2 cut(s) | 491, 509 |
| PpsI | GAGTC | 1 cut(s) | 349 |
| Ppu21I | YACGTR | 2 cut(s) | 491, 509 |
| PscI | ACATGT | 1 cut(s) | 285 |
| Psp6I | CCWGG | 1 cut(s) | 214 |
| PspCI | CACGTG | 2 cut(s) | 491, 509 |
| PspFI | CCCAGC | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 214 |
| RruI | TCGCGA | 1 cut(s) | 414 |
| RsaI | GTAC | 3 cut(s) | 137, 475, 601 |
| RsaNI | GTAC | 3 cut(s) | 136, 474, 600 |
| SaqAI | TTAA | 4 cut(s) | 92, 177, 296, 309 |
| Sau3AI | GATC | 3 cut(s) | 115, 478, 526 |
| SchI | GAGTC | 1 cut(s) | 349 |
| ScrFI | CCNGG | 1 cut(s) | 216 |
| SduI | GDGCHC | 1 cut(s) | 304 |
| SfaNI | GCATC | 3 cut(s) | 76, 160, 531 |
| SmlI | CTYRAG | 1 cut(s) | 295 |
| SmoI | CTYRAG | 1 cut(s) | 295 |
| Sse9I | AATT | 5 cut(s) | 93, 310, 373, 408, 421 |
| SsiI | CCGC | 1 cut(s) | 244 |
| SspMI | CTAG | 2 cut(s) | 120, 389 |
| StyD4I | CCNGG | 1 cut(s) | 214 |
| TaaI | ACNGT | 1 cut(s) | 165 |
| TaiI | ACGT | 5 cut(s) | 187, 307, 475, 493, 511 |
| TasI | AATT | 5 cut(s) | 93, 310, 373, 408, 421 |
| TfiI | GAWTC | 2 cut(s) | 240, 584 |
| Tru1I | TTAA | 4 cut(s) | 92, 177, 296, 309 |
| Tru9I | TTAA | 4 cut(s) | 92, 177, 296, 309 |
| TscAI | CASTG | 3 cut(s) | 37, 168, 236 |
| TspDTI | ATGAA | 4 cut(s) | 75, 449, 576, 579 |
| TspRI | CASTG | 3 cut(s) | 37, 168, 236 |
| Vha464I | CTTAAG | 1 cut(s) | 295 |
| XapI | RAATTY | 1 cut(s) | 408 |
| XceI | RCATGY | 1 cut(s) | 289 |
| XspI | CTAG | 2 cut(s) | 120, 389 |