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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 469 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1527 |
| Acc16I | TGCGCA | 1 cut(s) | 468 |
| Acc36I | ACCTGC | 1 cut(s) | 469 |
| AccB1I | GGYRCC | 1 cut(s) | 1618 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 155, 1563 |
| AccII | CGCG | 4 cut(s) | 377, 398, 599, 849 |
| AciI | CCGC | 6 cut(s) | 375, 396, 597, 657, 774, 1129 |
| AcoI | YGGCCR | 1 cut(s) | 582 |
| AcsI | RAATTY | 4 cut(s) | 356, 893, 1195, 1410 |
| AcuI | CTGAAG | 2 cut(s) | 330, 1617 |
| AcvI | CACGTG | 2 cut(s) | 1493, 1511 |
| AcyI | GRCGYC | 2 cut(s) | 498, 511 |
| AdeI | CACNNNGTG | 1 cut(s) | 1511 |
| AfaI | GTAC | 3 cut(s) | 926, 1188, 1697 |
| AflII | CTTAAG | 1 cut(s) | 1061 |
| AgsI | TTSAA | 4 cut(s) | 1033, 1162, 1324, 1378 |
| AjnI | CCWGG | 1 cut(s) | 1388 |
| AluBI | AGCT | 5 cut(s) | 338, 344, 505, 580, 1330 |
| AluI | AGCT | 5 cut(s) | 338, 344, 505, 580, 1330 |
| Alw26I | GTCTC | 2 cut(s) | 549, 1542 |
| Ama87I | CYCGRG | 1 cut(s) | 1415 |
| AoxI | GGCC | 3 cut(s) | 582, 1391, 1585 |
| ApeKI | GCWGC | 5 cut(s) | 464, 486, 570, 659, 680 |
| ApoI | RAATTY | 4 cut(s) | 356, 893, 1195, 1410 |
| AspLEI | GCGC | 8 cut(s) | 379, 420, 469, 480, 570, 601, 1179, 1569 |
| AspS9I | GGNCC | 2 cut(s) | 1016, 1586 |
| AsuHPI | GGTGA | 4 cut(s) | 420, 548, 630, 763 |
| AvaI | CYCGRG | 1 cut(s) | 1415 |
| AvaII | GGWCC | 1 cut(s) | 1016 |
| AxyI | CCTNAGG | 2 cut(s) | 8, 188 |
| BaeGI | GKGCMC | 1 cut(s) | 1621 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 908, 941 |
| BalI | TGGCCA | 1 cut(s) | 584 |
| BamHI | GGATCC | 3 cut(s) | 15, 85, 253 |
| BanI | GGYRCC | 1 cut(s) | 1618 |
| BbrPI | CACGTG | 2 cut(s) | 1493, 1511 |
| BbsI | GAAGAC | 2 cut(s) | 1040, 1244 |
| BbvI | GCAGC | 5 cut(s) | 451, 473, 582, 671, 692 |
| BccI | CCATC | 3 cut(s) | 992, 1007, 1568 |
| BciT130I | CCWGG | 1 cut(s) | 1390 |
| BclI | TGATCA | 1 cut(s) | 1332 |
| BcoDI | GTCTC | 2 cut(s) | 549, 1542 |
| BfaI | CTAG | 2 cut(s) | 1274, 1590 |
| BfmI | CTRYAG | 1 cut(s) | 1669 |
| BfoI | RGCGCY | 1 cut(s) | 481 |
| BfrI | CTTAAG | 1 cut(s) | 1061 |
| BfuAI | ACCTGC | 1 cut(s) | 469 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 962 |
| BisI | GCNGC | 7 cut(s) | 375, 396, 465, 487, 571, 660, 681 |
| BlsI | GCNGC | 7 cut(s) | 376, 397, 466, 488, 572, 661, 682 |
| Bme1390I | CCNGG | 1 cut(s) | 1390 |
| Bme18I | GGWCC | 1 cut(s) | 1016 |
| BmeT110I | CYCGRG | 1 cut(s) | 1415 |
| BmgT120I | GGNCC | 2 cut(s) | 1016, 1586 |
| BmiI | GGNNCC | 4 cut(s) | 17, 87, 255, 1620 |
| BmrFI | CCNGG | 1 cut(s) | 1390 |
| BmrI | ACTGGG | 2 cut(s) | 659, 761 |
| BmsI | GCATC | 8 cut(s) | 388, 630, 656, 704, 745, 816, 1045, 1599 |
| BmuI | ACTGGG | 2 cut(s) | 659, 761 |
| BpiI | GAAGAC | 2 cut(s) | 1040, 1244 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 703, 735 |
| BpmI | CTGGAG | 4 cut(s) | 436, 531, 589, 1313 |
| Bpu10I | CCTNAGC | 1 cut(s) | 710 |
| BpuEI | CTTGAG | 2 cut(s) | 738, 941 |
| BsaAI | YACGTR | 2 cut(s) | 1493, 1511 |
| BsaHI | GRCGYC | 2 cut(s) | 498, 511 |
| BsaI | GGTCTC | 1 cut(s) | 1542 |
| BsaJI | CCNNGG | 3 cut(s) | 94, 563, 1416 |
| Bse118I | RCCGGY | 2 cut(s) | 430, 533 |
| Bse1I | ACTGG | 4 cut(s) | 419, 665, 767, 1282 |
| Bse21I | CCTNAGG | 2 cut(s) | 8, 188 |
| BseBI | CCWGG | 1 cut(s) | 1390 |
| BseDI | CCNNGG | 3 cut(s) | 94, 563, 1416 |
| BseGI | GGATG | 3 cut(s) | 126, 591, 1060 |
| BseMII | CTCAG | 3 cut(s) | 325, 701, 1344 |
| BseNI | ACTGG | 4 cut(s) | 419, 665, 767, 1282 |
| BseSI | GKGCMC | 1 cut(s) | 1621 |
| BseXI | GCAGC | 5 cut(s) | 451, 473, 582, 671, 692 |
| BseYI | CCCAGC | 5 cut(s) | 370, 501, 630, 722, 761 |
| BsgI | GTGCAG | 1 cut(s) | 472 |
| Bsh1236I | CGCG | 4 cut(s) | 377, 398, 599, 849 |
| Bsh1285I | CGRYCG | 1 cut(s) | 213 |
| BshFI | GGCC | 3 cut(s) | 584, 1393, 1587 |
| BshNI | GGYRCC | 1 cut(s) | 1618 |
| BsiEI | CGRYCG | 1 cut(s) | 213 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1415 |
| BsiSI | CCGG | 3 cut(s) | 431, 534, 692 |
| BslFI | GGGAC | 4 cut(s) | 155, 1080, 1414, 1533 |
| BsmAI | GTCTC | 2 cut(s) | 549, 1542 |
| BsmBI | CGTCTC | 1 cut(s) | 549 |
| BsmFI | GGGAC | 4 cut(s) | 155, 1080, 1414, 1533 |
| BsnI | GGCC | 3 cut(s) | 584, 1393, 1587 |
| Bso31I | GGTCTC | 1 cut(s) | 1542 |
| BsoBI | CYCGRG | 1 cut(s) | 1415 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1621 |
| BspACI | CCGC | 6 cut(s) | 375, 396, 597, 657, 774, 1129 |
| BspANI | GGCC | 3 cut(s) | 584, 1393, 1587 |
| BspCNI | CTCAG | 3 cut(s) | 324, 702, 1345 |
| BspFNI | CGCG | 4 cut(s) | 377, 398, 599, 849 |
| BspHI | TCATGA | 1 cut(s) | 1084 |
| BspLI | GGNNCC | 4 cut(s) | 17, 87, 255, 1620 |
| BspMI | ACCTGC | 1 cut(s) | 469 |
| BspT107I | GGYRCC | 1 cut(s) | 1618 |
| BspTI | CTTAAG | 1 cut(s) | 1061 |
| BspTNI | GGTCTC | 1 cut(s) | 1542 |
| BsrFI | RCCGGY | 2 cut(s) | 430, 533 |
| BsrI | ACTGG | 4 cut(s) | 419, 665, 767, 1282 |
| BssAI | RCCGGY | 2 cut(s) | 430, 533 |
| BssECI | CCNNGG | 3 cut(s) | 94, 563, 1416 |
| BssNI | GRCGYC | 2 cut(s) | 498, 511 |
| BssT1I | CCWWGG | 2 cut(s) | 94, 563 |
| Bst2UI | CCWGG | 1 cut(s) | 1390 |
| Bst4CI | ACNGT | 9 cut(s) | 34, 154, 214, 262, 732, 932, 1020, 1050, 1111 |
| Bst6I | CTCTTC | 1 cut(s) | 827 |
| BstACI | GRCGYC | 2 cut(s) | 498, 511 |
| BstAFI | CTTAAG | 1 cut(s) | 1061 |
| BstBAI | YACGTR | 2 cut(s) | 1493, 1511 |
| BstC8I | GCNNGC | 6 cut(s) | 387, 582, 586, 783, 1133, 1585 |
| BstDEI | CTNAG | 8 cut(s) | 8, 188, 294, 311, 710, 740, 1353, 1623 |
| BstF5I | GGATG | 3 cut(s) | 126, 591, 1060 |
| BstFNI | CGCG | 4 cut(s) | 377, 398, 599, 849 |
| BstH2I | RGCGCY | 1 cut(s) | 481 |
| BstHHI | GCGC | 8 cut(s) | 379, 420, 469, 480, 570, 601, 1179, 1569 |
| BstMAI | GTCTC | 2 cut(s) | 549, 1542 |
| BstMCI | CGRYCG | 1 cut(s) | 213 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 395, 475, 486, 782, 962 |
| BstNI | CCWGG | 1 cut(s) | 1390 |
| BstSCI | CCNGG | 1 cut(s) | 1388 |
| BstSFI | CTRYAG | 1 cut(s) | 1669 |
| BstSLI | GKGCMC | 1 cut(s) | 1621 |
| BstUI | CGCG | 4 cut(s) | 377, 398, 599, 849 |
| BstV1I | GCAGC | 5 cut(s) | 451, 473, 582, 671, 692 |
| BstV2I | GAAGAC | 2 cut(s) | 1040, 1244 |
| BstX2I | RGATCY | 5 cut(s) | 15, 85, 158, 253, 471 |
| BstYI | RGATCY | 5 cut(s) | 15, 85, 158, 253, 471 |
| Bsu36I | CCTNAGG | 2 cut(s) | 8, 188 |
| BsuRI | GGCC | 3 cut(s) | 584, 1393, 1587 |
| BtgZI | GCGATG | 1 cut(s) | 681 |
| BtsCI | GGATG | 3 cut(s) | 126, 591, 1060 |
| BtsI | GCAGTG | 1 cut(s) | 975 |
| BtsIMutI | CAGTG | 5 cut(s) | 412, 728, 975, 996, 1121 |
| BveI | ACCTGC | 1 cut(s) | 469 |
| Cac8I | GCNNGC | 6 cut(s) | 387, 582, 586, 783, 1133, 1585 |
| CciI | TCATGA | 1 cut(s) | 1084 |
| CfoI | GCGC | 8 cut(s) | 379, 420, 469, 480, 570, 601, 1179, 1569 |
| Cfr10I | RCCGGY | 2 cut(s) | 430, 533 |
| Cfr13I | GGNCC | 2 cut(s) | 1016, 1586 |
| CseI | GACGC | 2 cut(s) | 506, 519 |
| Csp6I | GTAC | 3 cut(s) | 925, 1187, 1696 |
| CviAII | CATG | 4 cut(s) | 1085, 1523, 1598, 1665 |
| CviQI | GTAC | 3 cut(s) | 925, 1187, 1696 |
| DdeI | CTNAG | 8 cut(s) | 8, 188, 294, 311, 710, 740, 1353, 1623 |
| DraIII | CACNNNGTG | 1 cut(s) | 1511 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1527 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1527 |
| EaeI | YGGCCR | 1 cut(s) | 582 |
| Eam1104I | CTCTTC | 1 cut(s) | 827 |
| EarI | CTCTTC | 1 cut(s) | 827 |
| Eco130I | CCWWGG | 2 cut(s) | 94, 563 |
| Eco147I | AGGCCT | 1 cut(s) | 1393 |
| Eco31I | GGTCTC | 1 cut(s) | 1542 |
| Eco47I | GGWCC | 1 cut(s) | 1016 |
| Eco57I | CTGAAG | 2 cut(s) | 330, 1617 |
| Eco72I | CACGTG | 2 cut(s) | 1493, 1511 |
| Eco81I | CCTNAGG | 2 cut(s) | 8, 188 |
| Eco88I | CYCGRG | 1 cut(s) | 1415 |
| EcoRII | CCWGG | 1 cut(s) | 1388 |
| EcoT14I | CCWWGG | 2 cut(s) | 94, 563 |
| ErhI | CCWWGG | 2 cut(s) | 94, 563 |
| Esp3I | CGTCTC | 1 cut(s) | 549 |
| FaeI | CATG | 4 cut(s) | 1088, 1526, 1601, 1668 |
| FaqI | GGGAC | 4 cut(s) | 155, 1080, 1414, 1533 |
| FatI | CATG | 4 cut(s) | 1084, 1522, 1597, 1664 |
| FauI | CCCGC | 1 cut(s) | 604 |
| FbaI | TGATCA | 1 cut(s) | 1332 |
| Fnu4HI | GCNGC | 7 cut(s) | 375, 396, 465, 487, 571, 660, 681 |
| FokI | GGATG | 3 cut(s) | 133, 578, 1067 |
| Fsp4HI | GCNGC | 7 cut(s) | 375, 396, 465, 487, 571, 660, 681 |
| FspBI | CTAG | 2 cut(s) | 1274, 1590 |
| FspI | TGCGCA | 1 cut(s) | 468 |
| GlaI | GCGC | 8 cut(s) | 378, 419, 468, 479, 569, 600, 1178, 1568 |
| GluI | GCNGC | 7 cut(s) | 375, 396, 465, 487, 571, 660, 681 |
| GsaI | CCCAGC | 5 cut(s) | 374, 505, 634, 726, 765 |
| GsuI | CTGGAG | 4 cut(s) | 436, 531, 589, 1313 |
| HaeII | RGCGCY | 1 cut(s) | 481 |
| HaeIII | GGCC | 3 cut(s) | 584, 1393, 1587 |
| HapII | CCGG | 3 cut(s) | 431, 534, 692 |
| HgaI | GACGC | 2 cut(s) | 506, 519 |
| HhaI | GCGC | 8 cut(s) | 379, 420, 469, 480, 570, 601, 1179, 1569 |
| Hin1I | GRCGYC | 2 cut(s) | 498, 511 |
| Hin1II | CATG | 4 cut(s) | 1088, 1526, 1601, 1668 |
| Hin6I | GCGC | 8 cut(s) | 377, 418, 467, 478, 568, 599, 1177, 1567 |
| HinP1I | GCGC | 8 cut(s) | 377, 418, 467, 478, 568, 599, 1177, 1567 |
| HindIII | AAGCTT | 1 cut(s) | 336 |
| HinfI | GANTC | 8 cut(s) | 124, 675, 688, 908, 1240, 1311, 1357, 1680 |
| HpaII | CCGG | 3 cut(s) | 431, 534, 692 |
| HphI | GGTGA | 4 cut(s) | 420, 548, 630, 763 |
| Hpy166II | GTNNAC | 1 cut(s) | 638 |
| Hpy188III | TCNNGA | 6 cut(s) | 709, 1085, 1234, 1415, 1532, 1643 |
| Hpy8I | GTNNAC | 1 cut(s) | 638 |
| Hpy99I | CGWCG | 4 cut(s) | 106, 500, 513, 752 |
| HpyAV | CCTTC | 4 cut(s) | 435, 845, 967, 1641 |
| HpyCH4III | ACNGT | 9 cut(s) | 34, 154, 214, 262, 732, 932, 1020, 1050, 1111 |
| HpyCH4IV | ACGT | 4 cut(s) | 1069, 1189, 1492, 1510 |
| HpyCH4V | TGCA | 8 cut(s) | 489, 647, 785, 829, 1345, 1460, 1505, 1612 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 395, 475, 486, 782, 962 |
| HpyF3I | CTNAG | 8 cut(s) | 8, 188, 294, 311, 710, 740, 1353, 1623 |
| HpySE526I | ACGT | 4 cut(s) | 1069, 1189, 1492, 1510 |
| Hsp92I | GRCGYC | 2 cut(s) | 498, 511 |
| Hsp92II | CATG | 4 cut(s) | 1088, 1526, 1601, 1668 |
| HspAI | GCGC | 8 cut(s) | 377, 418, 467, 478, 568, 599, 1177, 1567 |
| Ksp22I | TGATCA | 1 cut(s) | 1332 |
| LmnI | GCTCC | 3 cut(s) | 510, 705, 1101 |
| Lsp1109I | GCAGC | 5 cut(s) | 451, 473, 582, 671, 692 |
| LweI | GCATC | 8 cut(s) | 388, 630, 656, 704, 745, 816, 1045, 1599 |
| MaeI | CTAG | 2 cut(s) | 1274, 1590 |
| MaeII | ACGT | 4 cut(s) | 1069, 1189, 1492, 1510 |
| MaeIII | GTNAC | 1 cut(s) | 769 |
| MflI | RGATCY | 5 cut(s) | 15, 85, 158, 253, 471 |
| MhlI | GDGCHC | 1 cut(s) | 1621 |
| MlsI | TGGCCA | 1 cut(s) | 584 |
| MluNI | TGGCCA | 1 cut(s) | 584 |
| MlyI | GAGTC | 5 cut(s) | 684, 902, 1234, 1366, 1689 |
| Mox20I | TGGCCA | 1 cut(s) | 584 |
| MscI | TGGCCA | 1 cut(s) | 584 |
| MseI | TTAA | 1 cut(s) | 1062 |
| Msp20I | TGGCCA | 1 cut(s) | 584 |
| MspA1I | CMGCKG | 1 cut(s) | 580 |
| MspCI | CTTAAG | 1 cut(s) | 1061 |
| MspI | CCGG | 3 cut(s) | 431, 534, 692 |
| MspR9I | CCNGG | 1 cut(s) | 1390 |
| MvaI | CCWGG | 1 cut(s) | 1390 |
| MvnI | CGCG | 4 cut(s) | 377, 398, 599, 849 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 395, 475, 486, 782, 962 |
| NlaIII | CATG | 4 cut(s) | 1088, 1526, 1601, 1668 |
| NlaIV | GGNNCC | 4 cut(s) | 17, 87, 255, 1620 |
| NmuCI | GTSAC | 1 cut(s) | 769 |
| NsbI | TGCGCA | 1 cut(s) | 468 |
| PagI | TCATGA | 1 cut(s) | 1084 |
| PaqCI | CACCTGC | 1 cut(s) | 469 |
| PceI | AGGCCT | 1 cut(s) | 1393 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 150 |
| PfeI | GAWTC | 3 cut(s) | 124, 688, 1311 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 155, 1563 |
| PkrI | GCNGC | 7 cut(s) | 376, 397, 466, 488, 572, 661, 682 |
| PleI | GAGTC | 5 cut(s) | 683, 902, 1234, 1365, 1688 |
| PmaCI | CACGTG | 2 cut(s) | 1493, 1511 |
| PmlI | CACGTG | 2 cut(s) | 1493, 1511 |
| PpsI | GAGTC | 5 cut(s) | 683, 902, 1234, 1365, 1688 |
| Ppu21I | YACGTR | 2 cut(s) | 1493, 1511 |
| Psp6I | CCWGG | 1 cut(s) | 1388 |
| PspCI | CACGTG | 2 cut(s) | 1493, 1511 |
| PspFI | CCCAGC | 5 cut(s) | 370, 501, 630, 722, 761 |
| PspGI | CCWGG | 1 cut(s) | 1388 |
| PspN4I | GGNNCC | 4 cut(s) | 17, 87, 255, 1620 |
| PspPI | GGNCC | 2 cut(s) | 1016, 1586 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 281, 313 |
| PsuI | RGATCY | 5 cut(s) | 15, 85, 158, 253, 471 |
| PvuII | CAGCTG | 1 cut(s) | 580 |
| RsaI | GTAC | 3 cut(s) | 926, 1188, 1697 |
| RsaNI | GTAC | 3 cut(s) | 925, 1187, 1696 |
| SaqAI | TTAA | 1 cut(s) | 1062 |
| SatI | GCNGC | 7 cut(s) | 375, 396, 465, 487, 571, 660, 681 |
| Sau96I | GGNCC | 2 cut(s) | 1016, 1586 |
| SchI | GAGTC | 5 cut(s) | 684, 902, 1234, 1366, 1689 |
| ScrFI | CCNGG | 1 cut(s) | 1390 |
| SduI | GDGCHC | 1 cut(s) | 1621 |
| SfaNI | GCATC | 8 cut(s) | 388, 630, 656, 704, 745, 816, 1045, 1599 |
| SfcI | CTRYAG | 1 cut(s) | 1669 |
| SgrAI | CRCCGGYG | 1 cut(s) | 533 |
| SinI | GGWCC | 1 cut(s) | 1016 |
| SmlI | CTYRAG | 3 cut(s) | 753, 920, 1061 |
| SmoI | CTYRAG | 3 cut(s) | 753, 920, 1061 |
| SseBI | AGGCCT | 1 cut(s) | 1393 |
| SsiI | CCGC | 6 cut(s) | 375, 396, 597, 657, 774, 1129 |
| SspMI | CTAG | 2 cut(s) | 1274, 1590 |
| StuI | AGGCCT | 1 cut(s) | 1393 |
| StyD4I | CCNGG | 1 cut(s) | 1388 |
| StyI | CCWWGG | 2 cut(s) | 94, 563 |
| TaaI | ACNGT | 9 cut(s) | 34, 154, 214, 262, 732, 932, 1020, 1050, 1111 |
| TaiI | ACGT | 4 cut(s) | 1072, 1192, 1495, 1513 |
| TaqI | TCGA | 1 cut(s) | 886 |
| TauI | GCSGC | 2 cut(s) | 377, 398 |
| TfiI | GAWTC | 3 cut(s) | 124, 688, 1311 |
| Tru1I | TTAA | 1 cut(s) | 1062 |
| Tru9I | TTAA | 1 cut(s) | 1062 |
| TscAI | CASTG | 5 cut(s) | 419, 735, 982, 1003, 1121 |
| TseFI | GTSAC | 1 cut(s) | 769 |
| TseI | GCWGC | 5 cut(s) | 464, 486, 570, 659, 680 |
| Tsp45I | GTSAC | 1 cut(s) | 769 |
| TspDTI | ATGAA | 5 cut(s) | 153, 349, 1073, 1137, 1674 |
| TspGWI | ACGGA | 5 cut(s) | 68, 188, 236, 531, 930 |
| TspRI | CASTG | 5 cut(s) | 419, 735, 982, 1003, 1121 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 155, 1563 |
| Vha464I | CTTAAG | 1 cut(s) | 1061 |
| VpaK11BI | GGWCC | 1 cut(s) | 1016 |
| XapI | RAATTY | 4 cut(s) | 356, 893, 1195, 1410 |
| XspI | CTAG | 2 cut(s) | 1274, 1590 |