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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 549 |
| Acc16I | TGCGCA | 1 cut(s) | 590 |
| AccB1I | GGYRCC | 1 cut(s) | 640 |
| AciI | CCGC | 2 cut(s) | 34, 151 |
| AclWI | GGATC | 3 cut(s) | 17, 247, 497 |
| AcsI | RAATTY | 3 cut(s) | 217, 233, 432 |
| AcuI | CTGAAG | 3 cut(s) | 32, 267, 639 |
| AcvI | CACGTG | 2 cut(s) | 515, 533 |
| AdeI | CACNNNGTG | 1 cut(s) | 533 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 138 |
| AflII | CTTAAG | 1 cut(s) | 83 |
| AgsI | TTSAA | 4 cut(s) | 55, 184, 346, 400 |
| AjiI | CACGTC | 2 cut(s) | 212, 497 |
| AluBI | AGCT | 1 cut(s) | 352 |
| AluI | AGCT | 1 cut(s) | 352 |
| AlwI | GGATC | 3 cut(s) | 17, 247, 497 |
| AoxI | GGCC | 3 cut(s) | 562, 571, 607 |
| ApoI | RAATTY | 3 cut(s) | 217, 233, 432 |
| AspLEI | GCGC | 2 cut(s) | 201, 591 |
| AspS9I | GGNCC | 3 cut(s) | 562, 572, 608 |
| AxyI | CCTNAGG | 1 cut(s) | 438 |
| BaeGI | GKGCMC | 1 cut(s) | 643 |
| BanI | GGYRCC | 1 cut(s) | 640 |
| BbrPI | CACGTG | 2 cut(s) | 515, 533 |
| BbsI | GAAGAC | 2 cut(s) | 62, 266 |
| BccI | CCATC | 2 cut(s) | 458, 590 |
| BceAI | ACGGC | 1 cut(s) | 549 |
| BclI | TGATCA | 1 cut(s) | 354 |
| BfaI | CTAG | 3 cut(s) | 27, 296, 612 |
| BfrI | CTTAAG | 1 cut(s) | 83 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 570 |
| BmgBI | CACGTC | 2 cut(s) | 212, 497 |
| BmgT120I | GGNCC | 3 cut(s) | 562, 572, 608 |
| BmiI | GGNNCC | 1 cut(s) | 642 |
| BmsI | GCATC | 1 cut(s) | 67 |
| BpiI | GAAGAC | 2 cut(s) | 62, 266 |
| BpmI | CTGGAG | 1 cut(s) | 335 |
| BsaAI | YACGTR | 2 cut(s) | 515, 533 |
| BsaJI | CCNNGG | 1 cut(s) | 565 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 138 |
| Bse21I | CCTNAGG | 1 cut(s) | 438 |
| Bse3DI | GCAATG | 1 cut(s) | 113 |
| BseDI | CCNNGG | 1 cut(s) | 565 |
| BseGI | GGATG | 1 cut(s) | 82 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 138 |
| BseMI | GCAATG | 1 cut(s) | 113 |
| BseMII | CTCAG | 2 cut(s) | 366, 429 |
| BseSI | GKGCMC | 1 cut(s) | 643 |
| BshFI | GGCC | 3 cut(s) | 564, 573, 609 |
| BshNI | GGYRCC | 1 cut(s) | 640 |
| BslFI | GGGAC | 3 cut(s) | 102, 436, 555 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 138 |
| BsmFI | GGGAC | 3 cut(s) | 102, 436, 555 |
| BsnI | GGCC | 3 cut(s) | 564, 573, 609 |
| Bsp1286I | GDGCHC | 1 cut(s) | 643 |
| Bsp143I | GATC | 4 cut(s) | 22, 252, 354, 502 |
| BspACI | CCGC | 2 cut(s) | 34, 151 |
| BspANI | GGCC | 3 cut(s) | 564, 573, 609 |
| BspCNI | CTCAG | 2 cut(s) | 367, 430 |
| BspHI | TCATGA | 2 cut(s) | 106, 553 |
| BspLI | GGNNCC | 1 cut(s) | 642 |
| BspPI | GGATC | 3 cut(s) | 17, 247, 497 |
| BspT107I | GGYRCC | 1 cut(s) | 640 |
| BspTI | CTTAAG | 1 cut(s) | 83 |
| BsrDI | GCAATG | 1 cut(s) | 113 |
| BssECI | CCNNGG | 1 cut(s) | 565 |
| BssMI | GATC | 4 cut(s) | 22, 252, 354, 502 |
| Bst4CI | ACNGT | 2 cut(s) | 72, 133 |
| BstAFI | CTTAAG | 1 cut(s) | 83 |
| BstBAI | YACGTR | 2 cut(s) | 515, 533 |
| BstC8I | GCNNGC | 2 cut(s) | 155, 607 |
| BstDEI | CTNAG | 4 cut(s) | 8, 375, 438, 645 |
| BstDSI | CCRYGG | 1 cut(s) | 565 |
| BstF5I | GGATG | 1 cut(s) | 82 |
| BstHHI | GCGC | 2 cut(s) | 201, 591 |
| BstKTI | GATC | 4 cut(s) | 25, 255, 357, 505 |
| BstMBI | GATC | 4 cut(s) | 22, 252, 354, 502 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 570 |
| BstSLI | GKGCMC | 1 cut(s) | 643 |
| BstV2I | GAAGAC | 2 cut(s) | 62, 266 |
| Bsu36I | CCTNAGG | 1 cut(s) | 438 |
| BsuRI | GGCC | 3 cut(s) | 564, 573, 609 |
| BtgI | CCRYGG | 1 cut(s) | 565 |
| BtrI | CACGTC | 2 cut(s) | 212, 497 |
| BtsCI | GGATG | 1 cut(s) | 82 |
| BtsIMutI | CAGTG | 1 cut(s) | 143 |
| Cac8I | GCNNGC | 2 cut(s) | 155, 607 |
| CciI | TCATGA | 2 cut(s) | 106, 553 |
| CfoI | GCGC | 2 cut(s) | 201, 591 |
| Cfr13I | GGNCC | 3 cut(s) | 562, 572, 608 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 580, 615 |
| CviAII | CATG | 3 cut(s) | 107, 554, 620 |
| CviJI | RGCY | 8 cut(s) | 30, 313, 352, 374, 443, 564, 573, 609 |
| CviKI_1 | RGCY | 8 cut(s) | 30, 313, 352, 374, 443, 564, 573, 609 |
| DdeI | CTNAG | 4 cut(s) | 8, 375, 438, 645 |
| DpnI | GATC | 4 cut(s) | 24, 254, 356, 504 |
| DpnII | GATC | 4 cut(s) | 22, 252, 354, 502 |
| DraIII | CACNNNGTG | 1 cut(s) | 533 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 549 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 549 |
| Eco57I | CTGAAG | 3 cut(s) | 32, 267, 639 |
| Eco72I | CACGTG | 2 cut(s) | 515, 533 |
| Eco81I | CCTNAGG | 1 cut(s) | 438 |
| EcoO109I | RGGNCCY | 1 cut(s) | 572 |
| EcoRI | GAATTC | 1 cut(s) | 233 |
| FaeI | CATG | 3 cut(s) | 110, 557, 623 |
| FaqI | GGGAC | 3 cut(s) | 102, 436, 555 |
| FatI | CATG | 3 cut(s) | 106, 553, 619 |
| FbaI | TGATCA | 1 cut(s) | 354 |
| FokI | GGATG | 1 cut(s) | 89 |
| FspBI | CTAG | 3 cut(s) | 27, 296, 612 |
| FspI | TGCGCA | 1 cut(s) | 590 |
| GlaI | GCGC | 2 cut(s) | 200, 590 |
| GsuI | CTGGAG | 1 cut(s) | 335 |
| HaeIII | GGCC | 3 cut(s) | 564, 573, 609 |
| HhaI | GCGC | 2 cut(s) | 201, 591 |
| Hin1II | CATG | 3 cut(s) | 110, 557, 623 |
| Hin6I | GCGC | 2 cut(s) | 199, 589 |
| HinP1I | GCGC | 2 cut(s) | 199, 589 |
| HinfI | GANTC | 3 cut(s) | 262, 301, 333 |
| Hpy188I | TCNGA | 1 cut(s) | 9 |
| Hpy188III | TCNNGA | 4 cut(s) | 107, 256, 437, 554 |
| HpyAV | CCTTC | 3 cut(s) | 56, 352, 663 |
| HpyCH4III | ACNGT | 2 cut(s) | 72, 133 |
| HpyCH4IV | ACGT | 5 cut(s) | 91, 211, 496, 514, 532 |
| HpyCH4V | TGCA | 4 cut(s) | 367, 482, 527, 634 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 570 |
| HpyF3I | CTNAG | 4 cut(s) | 8, 375, 438, 645 |
| HpySE526I | ACGT | 5 cut(s) | 91, 211, 496, 514, 532 |
| Hsp92II | CATG | 3 cut(s) | 110, 557, 623 |
| HspAI | GCGC | 2 cut(s) | 199, 589 |
| Ksp22I | TGATCA | 1 cut(s) | 354 |
| Kzo9I | GATC | 4 cut(s) | 22, 252, 354, 502 |
| LmnI | GCTCC | 1 cut(s) | 123 |
| LpnPI | CCDG | 6 cut(s) | 22, 135, 269, 299, 450, 591 |
| LweI | GCATC | 1 cut(s) | 67 |
| MaeI | CTAG | 3 cut(s) | 27, 296, 612 |
| MaeII | ACGT | 5 cut(s) | 91, 211, 496, 514, 532 |
| MalI | GATC | 4 cut(s) | 24, 254, 356, 504 |
| MboI | GATC | 4 cut(s) | 22, 252, 354, 502 |
| MboII | GAAGA | 3 cut(s) | 67, 254, 271 |
| MhlI | GDGCHC | 1 cut(s) | 643 |
| MluCI | AATT | 5 cut(s) | 217, 233, 288, 432, 445 |
| MlyI | GAGTC | 1 cut(s) | 256 |
| MmeI | TCCRAC | 1 cut(s) | 472 |
| MnlI | CCTC | 7 cut(s) | 3, 41, 372, 382, 433, 563, 585 |
| MseI | TTAA | 1 cut(s) | 84 |
| MspA1I | CMGCKG | 1 cut(s) | 36 |
| MspCI | CTTAAG | 1 cut(s) | 83 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 570 |
| NdeII | GATC | 4 cut(s) | 22, 252, 354, 502 |
| NlaIII | CATG | 3 cut(s) | 110, 557, 623 |
| NlaIV | GGNNCC | 1 cut(s) | 642 |
| NsbI | TGCGCA | 1 cut(s) | 590 |
| PagI | TCATGA | 2 cut(s) | 106, 553 |
| PfeI | GAWTC | 2 cut(s) | 301, 333 |
| PleI | GAGTC | 1 cut(s) | 256 |
| PmaCI | CACGTG | 2 cut(s) | 515, 533 |
| PmlI | CACGTG | 2 cut(s) | 515, 533 |
| PpsI | GAGTC | 1 cut(s) | 256 |
| Ppu21I | YACGTR | 2 cut(s) | 515, 533 |
| PspCI | CACGTG | 2 cut(s) | 515, 533 |
| PspN4I | GGNNCC | 1 cut(s) | 642 |
| PspPI | GGNCC | 3 cut(s) | 562, 572, 608 |
| SaqAI | TTAA | 1 cut(s) | 84 |
| Sau3AI | GATC | 4 cut(s) | 22, 252, 354, 502 |
| Sau96I | GGNCC | 3 cut(s) | 562, 572, 608 |
| SchI | GAGTC | 1 cut(s) | 256 |
| SduI | GDGCHC | 1 cut(s) | 643 |
| SfaNI | GCATC | 1 cut(s) | 67 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 570 |
| SmlI | CTYRAG | 1 cut(s) | 83 |
| SmoI | CTYRAG | 1 cut(s) | 83 |
| Sse9I | AATT | 5 cut(s) | 217, 233, 288, 432, 445 |
| SsiI | CCGC | 2 cut(s) | 34, 151 |
| SspMI | CTAG | 3 cut(s) | 27, 296, 612 |
| TaaI | ACNGT | 2 cut(s) | 72, 133 |
| TaiI | ACGT | 5 cut(s) | 94, 214, 499, 517, 535 |
| TasI | AATT | 5 cut(s) | 217, 233, 288, 432, 445 |
| TfiI | GAWTC | 2 cut(s) | 301, 333 |
| Tru1I | TTAA | 1 cut(s) | 84 |
| Tru9I | TTAA | 1 cut(s) | 84 |
| TscAI | CASTG | 1 cut(s) | 143 |
| TspDTI | ATGAA | 2 cut(s) | 95, 159 |
| TspRI | CASTG | 1 cut(s) | 143 |
| Vha464I | CTTAAG | 1 cut(s) | 83 |
| XapI | RAATTY | 3 cut(s) | 217, 233, 432 |
| XspI | CTAG | 3 cut(s) | 27, 296, 612 |