pycom01g00850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000158
Physical Location & Seq
Forward (+)
789800 .. 791350
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g00850.9

Sequence Viewer

Length: 1032 bp
ATGAAAGGGGGATTGTTTTTGACGAAATTAAAACTTAAAACAGAAACTTTGCATAAAACACTTTGTAAAAACGAATTTGGGATATATGCATACAAACCAATTTCCACAGATTTTCCTTATTCCATTGAATTGAATCAATACGCATTACAACCAAATTATCTTTCTCAAATTCCCTATATGAAACGCATTCATCACTATGAAACACATGAGACTCATACCAAGGATTTACTTAACACGATTGTGACTAGCAACCTCCACTACTTTCTAGCACCAAATTCATGCATGCAAATTAAGTCAAATCGCATTCAAGACTTAAGAAACAATGTCACATCCCGGCCCAGGGCAGATCACTTCCCGAGCCCGCACCACCACCGTAACACAATATTGTCCGCTTTGGCAACTTCGCAGTGGGTCACCTATCATGGGATTGCTCTAGCCCCCTTCTCGCTTAACTTCGGAGTTCCTACGGAATCCGAAGCCGGTGAGCTCCCAAAAGGCCTCGTGCTAGGTAGGGATGGGAATATACATATAAGGATCACTCCTCTGGGTGATGTGGGATGTCACAATCCACCCCCCTTAGGGACCCGACGTCCTCGTCGGCACACTTCCGGCCAGGGATTGGCTCTGATACCAAATTGTCACATCCCCGTTGTCCGCTTTGGGCTTACCATTCCCTCACGGTTTTGTTTTTGGGAACTCACGAGCAACTTTCCAGTGGGTCACCCATCATGGGAATATATGAATGGCAGATTGCACAAGTCTTCTTCTCCTTCCTTCCTTGCTTGCGGCACTAGGGTGATGTGGTATGAATTATGGTGTTTGATGGCTGAATATATGAATGGTTTGGCAGAAACCAAAGGGGAAAGGGATAGGGAATTTCGCCCAAAATTAAGGCTTCTAGAAACTAAGTATTTTGTGGCAGAAATTAGACTTCTAGAAGGGATAAAAGGCAGATTTCTAGAAGAACTTAGGCTAAGGGGTGCGGCACCTTTATATGTGGCAGATAAAGGATTAGTCCTTCTAAATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

344

Amino Acids

39.16

Weight (kDa)

9.45

Isoelectric Point (pI)

50.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 594
AatII GACGTC 1 cut(s) 592
AccB1I GGYRCC 1 cut(s) 985
AccB7I CCANNNNNTGG 1 cut(s) 619
AciI CCGC 5 cut(s) 362, 390, 655, 786, 983
AclWI GGATC 1 cut(s) 542
AcoI YGGCCR 1 cut(s) 610
AcsI RAATTY 4 cut(s) 74, 168, 274, 875
AcyI GRCGYC 1 cut(s) 589
AfiI CCNNNNNNNGG 7 cut(s) 339, 340, 423, 578, 579, 619, 730
AflII CTTAAG 1 cut(s) 313
AgsI TTSAA 3 cut(s) 128, 133, 308
AhdI GACNNNNNGTC 1 cut(s) 588
AjnI CCWGG 2 cut(s) 338, 612
AjuI GAANNNNNNNTTGG 2 cut(s) 145, 177
AleI CACNNNNGTG 2 cut(s) 239, 794
AluBI AGCT 2 cut(s) 487, 1029
AluI AGCT 2 cut(s) 487, 1029
Alw21I GWGCWC 1 cut(s) 489
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 1 cut(s) 542
Ama87I CYCGRG 1 cut(s) 355
AoxI GGCC 3 cut(s) 335, 496, 610
ApoI RAATTY 4 cut(s) 74, 168, 274, 875
AspS9I GGNCC 2 cut(s) 336, 582
AsuC2I CCSGG 1 cut(s) 334
AsuHPI GGTGA 5 cut(s) 406, 494, 560, 713, 808
AvaI CYCGRG 1 cut(s) 355
AvaII GGWCC 1 cut(s) 582
AxyI CCTNAGG 1 cut(s) 577
BanI GGYRCC 1 cut(s) 985
BanII GRGCYC 2 cut(s) 362, 489
BauI CACGAG 2 cut(s) 500, 700
BbsI GAAGAC 1 cut(s) 753
Bbv12I GWGCWC 1 cut(s) 489
BccI CCATC 3 cut(s) 509, 733, 817
BciT130I CCWGG 2 cut(s) 340, 614
BcnI CCSGG 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 9 cut(s) 246, 266, 434, 506, 792, 899, 935, 959, 1030
BfrI CTTAAG 1 cut(s) 313
BisI GCNGC 2 cut(s) 787, 984
BlsI GCNGC 2 cut(s) 788, 985
Bme1390I CCNGG 3 cut(s) 334, 340, 614
Bme18I GGWCC 1 cut(s) 582
BmeRI GACNNNNNGTC 1 cut(s) 588
BmeT110I CYCGRG 1 cut(s) 355
BmgT120I GGNCC 2 cut(s) 336, 582
BmiI GGNNCC 3 cut(s) 583, 584, 987
BmrFI CCNGG 3 cut(s) 334, 340, 614
BpiI GAAGAC 1 cut(s) 753
Bpu10I CCTNAGC 1 cut(s) 974
BpuMI CCSGG 1 cut(s) 334
BsaHI GRCGYC 1 cut(s) 589
BsaJI CCNNGG 4 cut(s) 219, 338, 339, 613
Bsc4I CCNNNNNNNGG 7 cut(s) 339, 340, 423, 578, 579, 619, 730
Bse118I RCCGGY 1 cut(s) 479
Bse1I ACTGG 1 cut(s) 713
Bse21I CCTNAGG 1 cut(s) 577
BseBI CCWGG 2 cut(s) 340, 614
BseDI CCNNGG 4 cut(s) 219, 338, 339, 613
BseGI GGATG 4 cut(s) 329, 520, 563, 642
BseLI CCNNNNNNNGG 7 cut(s) 339, 340, 423, 578, 579, 619, 730
BseNI ACTGG 1 cut(s) 713
BseRI GAGGAG 1 cut(s) 531
BshFI GGCC 3 cut(s) 337, 498, 612
BshNI GGYRCC 1 cut(s) 985
BsiHKAI GWGCWC 1 cut(s) 489
BsiHKCI CYCGRG 1 cut(s) 355
BsiSI CCGG 3 cut(s) 334, 480, 609
BslFI GGGAC 1 cut(s) 595
BslI CCNNNNNNNGG 7 cut(s) 339, 340, 423, 578, 579, 619, 730
BsmAI GTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 595
BsmI GAATGC 2 cut(s) 186, 303
BsnI GGCC 3 cut(s) 337, 498, 612
BsoBI CYCGRG 1 cut(s) 355
Bsp1286I GDGCHC 2 cut(s) 362, 489
Bsp143I GATC 2 cut(s) 346, 534
BspACI CCGC 5 cut(s) 362, 390, 655, 786, 983
BspANI GGCC 3 cut(s) 337, 498, 612
BspLI GGNNCC 3 cut(s) 583, 584, 987
BspPI GGATC 1 cut(s) 542
BspT107I GGYRCC 1 cut(s) 985
BspTI CTTAAG 1 cut(s) 313
BsrFI RCCGGY 1 cut(s) 479
BsrI ACTGG 1 cut(s) 713
BssAI RCCGGY 1 cut(s) 479
BssECI CCNNGG 4 cut(s) 219, 338, 339, 613
BssMI GATC 2 cut(s) 346, 534
BssNI GRCGYC 1 cut(s) 589
BssSI CACGAG 2 cut(s) 500, 700
BssT1I CCWWGG 1 cut(s) 219
Bst2BI CACGAG 2 cut(s) 500, 700
Bst2UI CCWGG 2 cut(s) 340, 614
Bst4CI ACNGT 2 cut(s) 374, 681
BstACI GRCGYC 1 cut(s) 589
BstAFI CTTAAG 1 cut(s) 313
BstC8I GCNNGC 3 cut(s) 284, 362, 784
BstDEI CTNAG 4 cut(s) 577, 906, 968, 974
BstEII GGTNACC 2 cut(s) 412, 719
BstF5I GGATG 4 cut(s) 329, 520, 563, 642
BstKTI GATC 2 cut(s) 349, 537
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 2 cut(s) 346, 534
BstNI CCWGG 2 cut(s) 340, 614
BstNSI RCATGY 1 cut(s) 286
BstPI GGTNACC 2 cut(s) 412, 719
BstSCI CCNGG 3 cut(s) 332, 338, 612
BstV2I GAAGAC 1 cut(s) 753
Bsu36I CCTNAGG 1 cut(s) 577
BsuRI GGCC 3 cut(s) 337, 498, 612
BtsCI GGATG 4 cut(s) 329, 520, 563, 642
BtsI GCAGTG 1 cut(s) 413
BtsIMutI CAGTG 2 cut(s) 413, 720
Cac8I GCNNGC 3 cut(s) 284, 362, 784
Cfr10I RCCGGY 1 cut(s) 479
Cfr13I GGNCC 2 cut(s) 336, 582
CviAII CATG 5 cut(s) 206, 279, 283, 422, 729
DdeI CTNAG 4 cut(s) 577, 906, 968, 974
DpnI GATC 2 cut(s) 348, 536
DpnII GATC 2 cut(s) 346, 534
DrdI GACNNNNNNGTC 1 cut(s) 594
DriI GACNNNNNGTC 1 cut(s) 588
DseDI GACNNNNNNGTC 1 cut(s) 594
EaeI YGGCCR 1 cut(s) 610
Eam1105I GACNNNNNGTC 1 cut(s) 588
Ecl136II GAGCTC 1 cut(s) 487
Eco130I CCWWGG 1 cut(s) 219
Eco147I AGGCCT 1 cut(s) 498
Eco24I GRGCYC 2 cut(s) 362, 489
Eco47I GGWCC 1 cut(s) 582
Eco53kI GAGCTC 1 cut(s) 487
Eco81I CCTNAGG 1 cut(s) 577
Eco88I CYCGRG 1 cut(s) 355
Eco91I GGTNACC 2 cut(s) 412, 719
EcoICRI GAGCTC 1 cut(s) 487
EcoO109I RGGNCCY 1 cut(s) 582
EcoO65I GGTNACC 2 cut(s) 412, 719
EcoRII CCWGG 2 cut(s) 338, 612
EcoT14I CCWWGG 1 cut(s) 219
EcoT22I ATGCAT 2 cut(s) 91, 284
EcoT38I GRGCYC 2 cut(s) 362, 489
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 5 cut(s) 209, 282, 286, 425, 732
FaqI GGGAC 1 cut(s) 595
FatI CATG 5 cut(s) 205, 278, 282, 421, 728
FauI CCCGC 1 cut(s) 369
Fnu4HI GCNGC 2 cut(s) 787, 984
FokI GGATG 4 cut(s) 316, 527, 570, 629
FriOI GRGCYC 2 cut(s) 362, 489
Fsp4HI GCNGC 2 cut(s) 787, 984
FspBI CTAG 9 cut(s) 246, 266, 434, 506, 792, 899, 935, 959, 1030
GluI GCNGC 2 cut(s) 787, 984
HaeIII GGCC 3 cut(s) 337, 498, 612
HapII CCGG 3 cut(s) 334, 480, 609
Hin1I GRCGYC 1 cut(s) 589
Hin1II CATG 5 cut(s) 209, 282, 286, 425, 732
HinfI GANTC 3 cut(s) 133, 211, 470
HpaII CCGG 3 cut(s) 334, 480, 609
HphI GGTGA 5 cut(s) 406, 494, 560, 713, 808
Hpy188I TCNGA 3 cut(s) 458, 475, 627
Hpy188III TCNNGA 6 cut(s) 308, 355, 700, 899, 935, 959
Hpy99I CGWCG 2 cut(s) 591, 600
HpyAV CCTTC 5 cut(s) 451, 780, 784, 932, 1028
HpyCH4III ACNGT 2 cut(s) 374, 681
HpyCH4IV ACGT 1 cut(s) 589
HpyCH4V TGCA 5 cut(s) 52, 89, 282, 286, 754
HpyF3I CTNAG 4 cut(s) 577, 906, 968, 974
HpySE526I ACGT 1 cut(s) 589
Hsp92I GRCGYC 1 cut(s) 589
Hsp92II CATG 5 cut(s) 209, 282, 286, 425, 732
KflI GGGWCCC 1 cut(s) 582
Kzo9I GATC 2 cut(s) 346, 534
LmnI GCTCC 1 cut(s) 492
LpnPI CCDG 9 cut(s) 325, 347, 352, 493, 530, 599, 622, 626, 726
MaeI CTAG 9 cut(s) 246, 266, 434, 506, 792, 899, 935, 959, 1030
MaeII ACGT 1 cut(s) 589
MaeIII GTNAC 7 cut(s) 241, 325, 374, 412, 560, 638, 719
MalI GATC 2 cut(s) 348, 536
MboI GATC 2 cut(s) 346, 534
MboII GAAGA 3 cut(s) 753, 756, 974
MhlI GDGCHC 2 cut(s) 362, 489
MlyI GAGTC 1 cut(s) 205
MnlI CCTC 5 cut(s) 263, 509, 552, 603, 685
Mph1103I ATGCAT 2 cut(s) 91, 284
MseI TTAA 7 cut(s) 29, 36, 231, 291, 314, 450, 890
MslI CAYNNNNRTG 3 cut(s) 195, 239, 794
MspCI CTTAAG 1 cut(s) 313
MspI CCGG 3 cut(s) 334, 480, 609
MspR9I CCNGG 3 cut(s) 334, 340, 614
Mva1269I GAATGC 2 cut(s) 186, 303
MvaI CCWGG 2 cut(s) 340, 614
NciI CCSGG 1 cut(s) 334
NdeII GATC 2 cut(s) 346, 534
NlaIII CATG 5 cut(s) 209, 282, 286, 425, 732
NlaIV GGNNCC 3 cut(s) 583, 584, 987
NmuCI GTSAC 6 cut(s) 241, 325, 412, 560, 638, 719
NsiI ATGCAT 2 cut(s) 91, 284
NspI RCATGY 1 cut(s) 286
OliI CACNNNNGTG 2 cut(s) 239, 794
PaeI GCATGC 1 cut(s) 286
PasI CCCWGGG 1 cut(s) 339
PceI AGGCCT 1 cut(s) 498
PctI GAATGC 2 cut(s) 186, 303
PfeI GAWTC 2 cut(s) 133, 470
PflMI CCANNNNNTGG 1 cut(s) 619
PkrI GCNGC 2 cut(s) 788, 985
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PpuMI RGGWCCY 1 cut(s) 582
Psp124BI GAGCTC 1 cut(s) 489
Psp5II RGGWCCY 1 cut(s) 582
Psp6I CCWGG 2 cut(s) 338, 612
PspEI GGTNACC 2 cut(s) 412, 719
PspGI CCWGG 2 cut(s) 338, 612
PspN4I GGNNCC 3 cut(s) 583, 584, 987
PspPI GGNCC 2 cut(s) 336, 582
PspPPI RGGWCCY 1 cut(s) 582
RseI CAYNNNNRTG 3 cut(s) 195, 239, 794
SacI GAGCTC 1 cut(s) 489
SaqAI TTAA 7 cut(s) 29, 36, 231, 291, 314, 450, 890
SatI GCNGC 2 cut(s) 787, 984
Sau3AI GATC 2 cut(s) 346, 534
Sau96I GGNCC 2 cut(s) 336, 582
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 3 cut(s) 334, 340, 614
SduI GDGCHC 2 cut(s) 362, 489
SetI ASST 7 cut(s) 255, 419, 489, 511, 592, 991, 1031
SinI GGWCC 1 cut(s) 582
SmiMI CAYNNNNRTG 3 cut(s) 195, 239, 794
SmlI CTYRAG 1 cut(s) 313
SmoI CTYRAG 1 cut(s) 313
SphI GCATGC 1 cut(s) 286
SseBI AGGCCT 1 cut(s) 498
SsiI CCGC 5 cut(s) 362, 390, 655, 786, 983
SspI AATATT 1 cut(s) 384
SspMI CTAG 9 cut(s) 246, 266, 434, 506, 792, 899, 935, 959, 1030
SstI GAGCTC 1 cut(s) 489
StuI AGGCCT 1 cut(s) 498
StyD4I CCNGG 3 cut(s) 332, 338, 612
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 2 cut(s) 374, 681
TaiI ACGT 1 cut(s) 592
TauI GCSGC 2 cut(s) 789, 986
TfiI GAWTC 2 cut(s) 133, 470
Tru1I TTAA 7 cut(s) 29, 36, 231, 291, 314, 450, 890
Tru9I TTAA 7 cut(s) 29, 36, 231, 291, 314, 450, 890
TscAI CASTG 2 cut(s) 413, 720
TseFI GTSAC 6 cut(s) 241, 325, 412, 560, 638, 719
Tsp45I GTSAC 6 cut(s) 241, 325, 412, 560, 638, 719
TspDTI ATGAA 8 cut(s) 17, 179, 194, 213, 267, 755, 822, 851
TspGWI ACGGA 1 cut(s) 482
TspRI CASTG 2 cut(s) 413, 720
Van91I CCANNNNNTGG 1 cut(s) 619
Vha464I CTTAAG 1 cut(s) 313
VpaK11BI GGWCC 1 cut(s) 582
XapI RAATTY 4 cut(s) 74, 168, 274, 875
XbaI TCTAGA 3 cut(s) 898, 934, 958
XceI RCATGY 1 cut(s) 286
XspI CTAG 9 cut(s) 246, 266, 434, 506, 792, 899, 935, 959, 1030
ZraI GACGTC 1 cut(s) 590
Zsp2I ATGCAT 2 cut(s) 91, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.