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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 838, 1765, 1823 |
| AcoI | YGGCCR | 1 cut(s) | 1281 |
| AcsI | RAATTY | 1 cut(s) | 49 |
| AcuI | CTGAAG | 1 cut(s) | 1407 |
| AfaI | GTAC | 1 cut(s) | 1365 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 549, 937, 1011, 1046 |
| AgsI | TTSAA | 9 cut(s) | 556, 622, 916, 925, 1075, 1100, 1121, 1570, 1618 |
| AjnI | CCWGG | 2 cut(s) | 548, 975 |
| AleI | CACNNNNGTG | 1 cut(s) | 240 |
| AluBI | AGCT | 8 cut(s) | 251, 1205, 1222, 1233, 1343, 1391, 1443, 1695 |
| AluI | AGCT | 8 cut(s) | 251, 1205, 1222, 1233, 1343, 1391, 1443, 1695 |
| Alw21I | GWGCWC | 1 cut(s) | 1224 |
| Alw26I | GTCTC | 2 cut(s) | 823, 1739 |
| Ama87I | CYCGRG | 1 cut(s) | 1347 |
| AoxI | GGCC | 3 cut(s) | 211, 1080, 1281 |
| ApoI | RAATTY | 1 cut(s) | 49 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1556, 1588 |
| AseI | ATTAAT | 1 cut(s) | 1710 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 330 |
| AspA2I | CCTAGG | 1 cut(s) | 1040 |
| AspS9I | GGNCC | 7 cut(s) | 14, 344, 394, 817, 1081, 1165, 1463 |
| AsuC2I | CCSGG | 2 cut(s) | 210, 1006 |
| AsuHPI | GGTGA | 3 cut(s) | 104, 1128, 1366 |
| AvaI | CYCGRG | 1 cut(s) | 1347 |
| AvaII | GGWCC | 6 cut(s) | 14, 344, 394, 817, 1165, 1463 |
| AvrII | CCTAGG | 1 cut(s) | 1040 |
| BanII | GRGCYC | 2 cut(s) | 1136, 1224 |
| BbsI | GAAGAC | 1 cut(s) | 1188 |
| Bbv12I | GWGCWC | 1 cut(s) | 1224 |
| BccI | CCATC | 2 cut(s) | 684, 1551 |
| BceAI | ACGGC | 1 cut(s) | 1095 |
| BciT130I | CCWGG | 2 cut(s) | 550, 977 |
| BcnI | CCSGG | 2 cut(s) | 210, 1006 |
| BcoDI | GTCTC | 2 cut(s) | 823, 1739 |
| BfaI | CTAG | 7 cut(s) | 135, 1011, 1041, 1325, 1584, 1692, 1742 |
| BisI | GCNGC | 3 cut(s) | 838, 1765, 1823 |
| BlnI | CCTAGG | 1 cut(s) | 1040 |
| BlsI | GCNGC | 3 cut(s) | 839, 1766, 1824 |
| Bme1390I | CCNGG | 4 cut(s) | 210, 550, 977, 1006 |
| Bme18I | GGWCC | 6 cut(s) | 14, 344, 394, 817, 1165, 1463 |
| BmeT110I | CYCGRG | 1 cut(s) | 1347 |
| BmgT120I | GGNCC | 7 cut(s) | 14, 344, 394, 817, 1081, 1165, 1463 |
| BmiI | GGNNCC | 2 cut(s) | 1038, 1501 |
| BmrFI | CCNGG | 4 cut(s) | 210, 550, 977, 1006 |
| BmsI | GCATC | 2 cut(s) | 203, 358 |
| BpiI | GAAGAC | 1 cut(s) | 1188 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 806, 838 |
| BpmI | CTGGAG | 1 cut(s) | 1624 |
| Bpu10I | CCTNAGC | 2 cut(s) | 490, 1218 |
| BpuMI | CCSGG | 2 cut(s) | 210, 1006 |
| BsaBI | GATNNNNATC | 2 cut(s) | 193, 749 |
| BsaI | GGTCTC | 1 cut(s) | 1739 |
| BsaJI | CCNNGG | 4 cut(s) | 208, 960, 1040, 1084 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 549, 937, 1011, 1046 |
| Bse3DI | GCAATG | 1 cut(s) | 860 |
| Bse8I | GATNNNNATC | 2 cut(s) | 193, 749 |
| BseBI | CCWGG | 2 cut(s) | 550, 977 |
| BseDI | CCNNGG | 4 cut(s) | 208, 960, 1040, 1084 |
| BseGI | GGATG | 4 cut(s) | 121, 194, 1562, 1814 |
| BseJI | GATNNNNATC | 2 cut(s) | 193, 749 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 549, 937, 1011, 1046 |
| BseMI | GCAATG | 1 cut(s) | 860 |
| BseMII | CTCAG | 5 cut(s) | 1019, 1197, 1209, 1305, 1748 |
| BseYI | CCCAGC | 1 cut(s) | 1045 |
| BshFI | GGCC | 3 cut(s) | 213, 1082, 1283 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1224 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1347 |
| BsiSI | CCGG | 3 cut(s) | 210, 1005, 1284 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 549, 937, 1011, 1046 |
| BsmAI | GTCTC | 2 cut(s) | 823, 1739 |
| BsmI | GAATGC | 1 cut(s) | 266 |
| BsnI | GGCC | 3 cut(s) | 213, 1082, 1283 |
| Bso31I | GGTCTC | 1 cut(s) | 1739 |
| BsoBI | CYCGRG | 1 cut(s) | 1347 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1136, 1224 |
| BspACI | CCGC | 3 cut(s) | 838, 1765, 1823 |
| BspANI | GGCC | 3 cut(s) | 213, 1082, 1283 |
| BspCNI | CTCAG | 5 cut(s) | 1020, 1198, 1210, 1306, 1747 |
| BspLI | GGNNCC | 2 cut(s) | 1038, 1501 |
| BspQI | GCTCTTC | 1 cut(s) | 838 |
| BspTNI | GGTCTC | 1 cut(s) | 1739 |
| BsrDI | GCAATG | 1 cut(s) | 860 |
| BssECI | CCNNGG | 4 cut(s) | 208, 960, 1040, 1084 |
| BssT1I | CCWWGG | 3 cut(s) | 960, 1040, 1084 |
| Bst2UI | CCWGG | 2 cut(s) | 550, 977 |
| Bst4CI | ACNGT | 2 cut(s) | 426, 592 |
| Bst6I | CTCTTC | 2 cut(s) | 807, 838 |
| BstC8I | GCNNGC | 2 cut(s) | 496, 1305 |
| BstDEI | CTNAG | 7 cut(s) | 490, 1028, 1206, 1218, 1314, 1423, 1734 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 935 |
| BstF5I | GGATG | 4 cut(s) | 121, 194, 1562, 1814 |
| BstMAI | GTCTC | 2 cut(s) | 823, 1739 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1479 |
| BstNI | CCWGG | 2 cut(s) | 550, 977 |
| BstNSI | RCATGY | 3 cut(s) | 498, 804, 1829 |
| BstSCI | CCNGG | 4 cut(s) | 208, 548, 975, 1004 |
| BstV2I | GAAGAC | 1 cut(s) | 1188 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1091 |
| BsuRI | GGCC | 3 cut(s) | 213, 1082, 1283 |
| BtgZI | GCGATG | 1 cut(s) | 558 |
| BtsCI | GGATG | 4 cut(s) | 121, 194, 1562, 1814 |
| BtsIMutI | CAGTG | 2 cut(s) | 247, 597 |
| Cac8I | GCNNGC | 2 cut(s) | 496, 1305 |
| Cfr13I | GGNCC | 7 cut(s) | 14, 344, 394, 817, 1081, 1165, 1463 |
| CsiI | ACCWGGT | 1 cut(s) | 975 |
| Csp6I | GTAC | 1 cut(s) | 1364 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 436, 471 |
| CviAII | CATG | 6 cut(s) | 265, 495, 742, 801, 1523, 1826 |
| CviQI | GTAC | 1 cut(s) | 1364 |
| DdeI | CTNAG | 7 cut(s) | 490, 1028, 1206, 1218, 1314, 1423, 1734 |
| DraI | TTTAAA | 3 cut(s) | 48, 178, 1723 |
| EaeI | YGGCCR | 1 cut(s) | 1281 |
| Eam1104I | CTCTTC | 2 cut(s) | 807, 838 |
| EarI | CTCTTC | 2 cut(s) | 807, 838 |
| Ecl136II | GAGCTC | 1 cut(s) | 1222 |
| Eco130I | CCWWGG | 3 cut(s) | 960, 1040, 1084 |
| Eco24I | GRGCYC | 2 cut(s) | 1136, 1224 |
| Eco31I | GGTCTC | 1 cut(s) | 1739 |
| Eco47I | GGWCC | 6 cut(s) | 14, 344, 394, 817, 1165, 1463 |
| Eco53kI | GAGCTC | 1 cut(s) | 1222 |
| Eco57I | CTGAAG | 1 cut(s) | 1407 |
| Eco88I | CYCGRG | 1 cut(s) | 1347 |
| EcoICRI | GAGCTC | 1 cut(s) | 1222 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 935 |
| EcoO109I | RGGNCCY | 4 cut(s) | 14, 344, 1165, 1463 |
| EcoRII | CCWGG | 2 cut(s) | 548, 975 |
| EcoT14I | CCWWGG | 3 cut(s) | 960, 1040, 1084 |
| EcoT22I | ATGCAT | 2 cut(s) | 266, 806 |
| EcoT38I | GRGCYC | 2 cut(s) | 1136, 1224 |
| ErhI | CCWWGG | 3 cut(s) | 960, 1040, 1084 |
| FaeI | CATG | 6 cut(s) | 268, 498, 745, 804, 1526, 1829 |
| FatI | CATG | 6 cut(s) | 264, 494, 741, 800, 1522, 1825 |
| Fnu4HI | GCNGC | 3 cut(s) | 838, 1765, 1823 |
| FokI | GGATG | 4 cut(s) | 108, 181, 1569, 1801 |
| FriOI | GRGCYC | 2 cut(s) | 1136, 1224 |
| Fsp4HI | GCNGC | 3 cut(s) | 838, 1765, 1823 |
| FspBI | CTAG | 7 cut(s) | 135, 1011, 1041, 1325, 1584, 1692, 1742 |
| GluI | GCNGC | 3 cut(s) | 838, 1765, 1823 |
| GsaI | CCCAGC | 1 cut(s) | 1049 |
| GsuI | CTGGAG | 1 cut(s) | 1624 |
| HaeIII | GGCC | 3 cut(s) | 213, 1082, 1283 |
| HapII | CCGG | 3 cut(s) | 210, 1005, 1284 |
| Hin1II | CATG | 6 cut(s) | 268, 498, 745, 804, 1526, 1829 |
| HindIII | AAGCTT | 2 cut(s) | 1341, 1389 |
| HinfI | GANTC | 5 cut(s) | 91, 360, 912, 992, 1738 |
| HpaII | CCGG | 3 cut(s) | 210, 1005, 1284 |
| HphI | GGTGA | 3 cut(s) | 104, 1128, 1366 |
| Hpy166II | GTNNAC | 1 cut(s) | 820 |
| Hpy188I | TCNGA | 4 cut(s) | 336, 1226, 1296, 1737 |
| Hpy188III | TCNNGA | 8 cut(s) | 916, 948, 1217, 1347, 1385, 1575, 1603, 1742 |
| Hpy8I | GTNNAC | 1 cut(s) | 820 |
| Hpy99I | CGWCG | 1 cut(s) | 1230 |
| HpyAV | CCTTC | 6 cut(s) | 5, 27, 209, 1094, 1381, 1697 |
| HpyCH4III | ACNGT | 2 cut(s) | 426, 592 |
| HpyCH4IV | ACGT | 2 cut(s) | 475, 920 |
| HpyCH4V | TGCA | 6 cut(s) | 264, 317, 608, 804, 1307, 1492 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1479 |
| HpyF3I | CTNAG | 7 cut(s) | 490, 1028, 1206, 1218, 1314, 1423, 1734 |
| HpySE526I | ACGT | 2 cut(s) | 475, 920 |
| Hsp92II | CATG | 6 cut(s) | 268, 498, 745, 804, 1526, 1829 |
| LguI | GCTCTTC | 1 cut(s) | 838 |
| LmnI | GCTCC | 5 cut(s) | 1227, 1230, 1499, 1509, 1546 |
| LweI | GCATC | 2 cut(s) | 203, 358 |
| MabI | ACCWGGT | 1 cut(s) | 975 |
| MaeI | CTAG | 7 cut(s) | 135, 1011, 1041, 1325, 1584, 1692, 1742 |
| MaeII | ACGT | 2 cut(s) | 475, 920 |
| MaeIII | GTNAC | 2 cut(s) | 592, 1158 |
| MboII | GAAGA | 8 cut(s) | 377, 660, 824, 855, 1187, 1190, 1193, 1640 |
| MfeI | CAATTG | 1 cut(s) | 1140 |
| MhlI | GDGCHC | 2 cut(s) | 1136, 1224 |
| MlyI | GAGTC | 3 cut(s) | 100, 354, 1001 |
| MmeI | TCCRAC | 4 cut(s) | 563, 663, 996, 1249 |
| MnlI | CCTC | 8 cut(s) | 316, 350, 546, 808, 1182, 1263, 1573, 1816 |
| Mph1103I | ATGCAT | 2 cut(s) | 266, 806 |
| MroXI | GAANNNNTTC | 1 cut(s) | 330 |
| MslI | CAYNNNNRTG | 2 cut(s) | 240, 1414 |
| MspI | CCGG | 3 cut(s) | 210, 1005, 1284 |
| MspR9I | CCNGG | 4 cut(s) | 210, 550, 977, 1006 |
| MunI | CAATTG | 1 cut(s) | 1140 |
| Mva1269I | GAATGC | 1 cut(s) | 266 |
| MvaI | CCWGG | 2 cut(s) | 550, 977 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1479 |
| NciI | CCSGG | 2 cut(s) | 210, 1006 |
| NlaIII | CATG | 6 cut(s) | 268, 498, 745, 804, 1526, 1829 |
| NlaIV | GGNNCC | 2 cut(s) | 1038, 1501 |
| NmuCI | GTSAC | 2 cut(s) | 592, 1158 |
| NsiI | ATGCAT | 2 cut(s) | 266, 806 |
| NspI | RCATGY | 3 cut(s) | 498, 804, 1829 |
| OliI | CACNNNNGTG | 1 cut(s) | 240 |
| PaeI | GCATGC | 1 cut(s) | 498 |
| PciSI | GCTCTTC | 1 cut(s) | 838 |
| PctI | GAATGC | 1 cut(s) | 266 |
| PdmI | GAANNNNTTC | 1 cut(s) | 330 |
| PfeI | GAWTC | 2 cut(s) | 912, 1738 |
| PkrI | GCNGC | 3 cut(s) | 839, 1766, 1824 |
| PleI | GAGTC | 3 cut(s) | 99, 354, 1000 |
| PpsI | GAGTC | 3 cut(s) | 99, 354, 1000 |
| PpuMI | RGGWCCY | 4 cut(s) | 14, 344, 1165, 1463 |
| PshBI | ATTAAT | 1 cut(s) | 1710 |
| Psp124BI | GAGCTC | 1 cut(s) | 1224 |
| Psp5II | RGGWCCY | 4 cut(s) | 14, 344, 1165, 1463 |
| Psp6I | CCWGG | 2 cut(s) | 548, 975 |
| PspFI | CCCAGC | 1 cut(s) | 1045 |
| PspGI | CCWGG | 2 cut(s) | 548, 975 |
| PspN4I | GGNNCC | 2 cut(s) | 1038, 1501 |
| PspPI | GGNCC | 7 cut(s) | 14, 344, 394, 817, 1081, 1165, 1463 |
| PspPPI | RGGWCCY | 4 cut(s) | 14, 344, 1165, 1463 |
| RsaI | GTAC | 1 cut(s) | 1365 |
| RsaNI | GTAC | 1 cut(s) | 1364 |
| RseI | CAYNNNNRTG | 2 cut(s) | 240, 1414 |
| SacI | GAGCTC | 1 cut(s) | 1224 |
| SapI | GCTCTTC | 1 cut(s) | 838 |
| SatI | GCNGC | 3 cut(s) | 838, 1765, 1823 |
| Sau96I | GGNCC | 7 cut(s) | 14, 344, 394, 817, 1081, 1165, 1463 |
| SchI | GAGTC | 3 cut(s) | 100, 354, 1001 |
| ScrFI | CCNGG | 4 cut(s) | 210, 550, 977, 1006 |
| SduI | GDGCHC | 2 cut(s) | 1136, 1224 |
| SexAI | ACCWGGT | 1 cut(s) | 975 |
| SfaNI | GCATC | 2 cut(s) | 203, 358 |
| SinI | GGWCC | 6 cut(s) | 14, 344, 394, 817, 1165, 1463 |
| SmiI | ATTTAAAT | 1 cut(s) | 1723 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 240, 1414 |
| SphI | GCATGC | 1 cut(s) | 498 |
| SsiI | CCGC | 3 cut(s) | 838, 1765, 1823 |
| SspI | AATATT | 4 cut(s) | 231, 729, 944, 956 |
| SspMI | CTAG | 7 cut(s) | 135, 1011, 1041, 1325, 1584, 1692, 1742 |
| SstI | GAGCTC | 1 cut(s) | 1224 |
| StyD4I | CCNGG | 4 cut(s) | 208, 548, 975, 1004 |
| StyI | CCWWGG | 3 cut(s) | 960, 1040, 1084 |
| SwaI | ATTTAAAT | 1 cut(s) | 1723 |
| TaaI | ACNGT | 2 cut(s) | 426, 592 |
| TaiI | ACGT | 2 cut(s) | 478, 923 |
| TaqI | TCGA | 3 cut(s) | 363, 705, 1268 |
| TatI | WGTACW | 1 cut(s) | 1363 |
| TauI | GCSGC | 3 cut(s) | 840, 1767, 1825 |
| TfiI | GAWTC | 2 cut(s) | 912, 1738 |
| TscAI | CASTG | 2 cut(s) | 247, 597 |
| TseFI | GTSAC | 2 cut(s) | 592, 1158 |
| Tsp45I | GTSAC | 2 cut(s) | 592, 1158 |
| TspDTI | ATGAA | 4 cut(s) | 261, 309, 528, 660 |
| TspGWI | ACGGA | 3 cut(s) | 724, 882, 1243 |
| TspRI | CASTG | 2 cut(s) | 247, 597 |
| VpaK11BI | GGWCC | 6 cut(s) | 14, 344, 394, 817, 1165, 1463 |
| VspI | ATTAAT | 1 cut(s) | 1710 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 935 |
| XapI | RAATTY | 1 cut(s) | 49 |
| XbaI | TCTAGA | 1 cut(s) | 1741 |
| XceI | RCATGY | 3 cut(s) | 498, 804, 1829 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 546 |
| XmaJI | CCTAGG | 1 cut(s) | 1040 |
| XmnI | GAANNNNTTC | 1 cut(s) | 330 |
| XspI | CTAG | 7 cut(s) | 135, 1011, 1041, 1325, 1584, 1692, 1742 |
| Zsp2I | ATGCAT | 2 cut(s) | 266, 806 |