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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 849 |
| Acc36I | ACCTGC | 1 cut(s) | 849 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 371 |
| AccI | GTMKAC | 1 cut(s) | 868 |
| AccII | CGCG | 2 cut(s) | 531, 1137 |
| AciI | CCGC | 6 cut(s) | 306, 1329, 1371, 1411, 1647, 1738 |
| AclWI | GGATC | 5 cut(s) | 146, 159, 236, 452, 1429 |
| AcoI | YGGCCR | 1 cut(s) | 373 |
| AcsI | RAATTY | 3 cut(s) | 35, 842, 1267 |
| AcuI | CTGAAG | 1 cut(s) | 486 |
| AfaI | GTAC | 2 cut(s) | 887, 1454 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 230, 371, 405, 406, 503, 895, 1444, 1494 |
| AgsI | TTSAA | 9 cut(s) | 94, 125, 131, 802, 921, 961, 1097, 1171, 1273 |
| AjiI | CACGTC | 1 cut(s) | 968 |
| AjnI | CCWGG | 6 cut(s) | 224, 337, 370, 497, 627, 1676 |
| Alw21I | GWGCWC | 1 cut(s) | 212 |
| Alw26I | GTCTC | 1 cut(s) | 727 |
| AlwI | GGATC | 5 cut(s) | 146, 159, 236, 452, 1429 |
| AoxI | GGCC | 9 cut(s) | 197, 297, 373, 395, 570, 625, 1568, 1674, 1679 |
| ApaI | GGGCCC | 3 cut(s) | 301, 399, 574 |
| ApoI | RAATTY | 3 cut(s) | 35, 842, 1267 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1475, 1507 |
| AseI | ATTAAT | 1 cut(s) | 1403 |
| AspA2I | CCTAGG | 1 cut(s) | 433 |
| AspS9I | GGNCC | 8 cut(s) | 297, 298, 395, 396, 570, 571, 625, 1569 |
| AsuHPI | GGTGA | 3 cut(s) | 245, 518, 1357 |
| AvrII | CCTAGG | 1 cut(s) | 433 |
| AxyI | CCTNAGG | 1 cut(s) | 401 |
| BaeGI | GKGCMC | 3 cut(s) | 301, 399, 574 |
| BamHI | GGATCC | 1 cut(s) | 151 |
| BanII | GRGCYC | 5 cut(s) | 301, 338, 399, 574, 1222 |
| BauI | CACGAG | 2 cut(s) | 193, 1573 |
| BbsI | GAAGAC | 2 cut(s) | 1019, 1302 |
| Bbv12I | GWGCWC | 1 cut(s) | 212 |
| BccI | CCATC | 5 cut(s) | 187, 496, 1174, 1370, 1427 |
| BceAI | ACGGC | 1 cut(s) | 360 |
| BciT130I | CCWGG | 6 cut(s) | 226, 339, 372, 499, 629, 1678 |
| BcoDI | GTCTC | 1 cut(s) | 727 |
| BfaI | CTAG | 6 cut(s) | 189, 434, 710, 1461, 1566, 1604 |
| BfuAI | ACCTGC | 1 cut(s) | 849 |
| BglII | AGATCT | 1 cut(s) | 929 |
| BisI | GCNGC | 1 cut(s) | 1739 |
| BlnI | CCTAGG | 1 cut(s) | 433 |
| BlsI | GCNGC | 1 cut(s) | 1740 |
| Bme1390I | CCNGG | 6 cut(s) | 226, 339, 372, 499, 629, 1678 |
| BmgBI | CACGTC | 1 cut(s) | 968 |
| BmgT120I | GGNCC | 8 cut(s) | 297, 298, 395, 396, 570, 571, 625, 1569 |
| BmrFI | CCNGG | 6 cut(s) | 226, 339, 372, 499, 629, 1678 |
| BmsI | GCATC | 4 cut(s) | 859, 1109, 1252, 1284 |
| BpiI | GAAGAC | 2 cut(s) | 1019, 1302 |
| BpuEI | CTTGAG | 1 cut(s) | 1216 |
| Bsa29I | ATCGAT | 1 cut(s) | 136 |
| BsaJI | CCNNGG | 7 cut(s) | 224, 337, 370, 433, 497, 628, 1443 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1343, 1373 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 230, 371, 405, 406, 503, 895, 1444, 1494 |
| Bse1I | ACTGG | 2 cut(s) | 889, 1711 |
| Bse21I | CCTNAGG | 1 cut(s) | 401 |
| BseBI | CCWGG | 6 cut(s) | 226, 339, 372, 499, 629, 1678 |
| BseCI | ATCGAT | 1 cut(s) | 136 |
| BseDI | CCNNGG | 7 cut(s) | 224, 337, 370, 433, 497, 628, 1443 |
| BseGI | GGATG | 6 cut(s) | 347, 420, 507, 1185, 1341, 1715 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 230, 371, 405, 406, 503, 895, 1444, 1494 |
| BseMII | CTCAG | 3 cut(s) | 229, 602, 1440 |
| BseNI | ACTGG | 2 cut(s) | 889, 1711 |
| BseSI | GKGCMC | 3 cut(s) | 301, 399, 574 |
| BseYI | CCCAGC | 1 cut(s) | 1297 |
| BsgI | GTGCAG | 1 cut(s) | 1132 |
| Bsh1236I | CGCG | 2 cut(s) | 531, 1137 |
| BshFI | GGCC | 9 cut(s) | 199, 299, 375, 397, 572, 627, 1570, 1676, 1681 |
| BshVI | ATCGAT | 1 cut(s) | 136 |
| BsiHKAI | GWGCWC | 1 cut(s) | 212 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 230, 371, 405, 406, 503, 895, 1444, 1494 |
| BsmAI | GTCTC | 1 cut(s) | 727 |
| BsmI | GAATGC | 1 cut(s) | 219 |
| BsnI | GGCC | 9 cut(s) | 199, 299, 375, 397, 572, 627, 1570, 1676, 1681 |
| Bsp120I | GGGCCC | 3 cut(s) | 297, 395, 570 |
| Bsp1286I | GDGCHC | 6 cut(s) | 212, 301, 338, 399, 574, 1222 |
| Bsp143I | GATC | 7 cut(s) | 137, 151, 228, 444, 586, 929, 1434 |
| Bsp19I | CCATGG | 1 cut(s) | 1443 |
| BspACI | CCGC | 6 cut(s) | 306, 1329, 1371, 1411, 1647, 1738 |
| BspANI | GGCC | 9 cut(s) | 199, 299, 375, 397, 572, 627, 1570, 1676, 1681 |
| BspCNI | CTCAG | 3 cut(s) | 228, 603, 1441 |
| BspDI | ATCGAT | 1 cut(s) | 136 |
| BspFNI | CGCG | 2 cut(s) | 531, 1137 |
| BspHI | TCATGA | 2 cut(s) | 970, 1050 |
| BspMI | ACCTGC | 1 cut(s) | 849 |
| BspPI | GGATC | 5 cut(s) | 146, 159, 236, 452, 1429 |
| BsrI | ACTGG | 2 cut(s) | 889, 1711 |
| BssECI | CCNNGG | 7 cut(s) | 224, 337, 370, 433, 497, 628, 1443 |
| BssMI | GATC | 7 cut(s) | 137, 151, 228, 444, 586, 929, 1434 |
| BssSI | CACGAG | 2 cut(s) | 193, 1573 |
| BssT1I | CCWWGG | 2 cut(s) | 433, 1443 |
| Bst2BI | CACGAG | 2 cut(s) | 193, 1573 |
| Bst2UI | CCWGG | 6 cut(s) | 226, 339, 372, 499, 629, 1678 |
| Bst4CI | ACNGT | 3 cut(s) | 325, 598, 1153 |
| BstC8I | GCNNGC | 3 cut(s) | 529, 807, 1654 |
| BstDEI | CTNAG | 8 cut(s) | 215, 401, 611, 814, 822, 1290, 1449, 1633 |
| BstDSI | CCRYGG | 1 cut(s) | 1443 |
| BstEII | GGTNACC | 2 cut(s) | 233, 506 |
| BstF5I | GGATG | 6 cut(s) | 347, 420, 507, 1185, 1341, 1715 |
| BstFNI | CGCG | 2 cut(s) | 531, 1137 |
| BstKTI | GATC | 7 cut(s) | 140, 154, 231, 447, 589, 932, 1437 |
| BstMAI | GTCTC | 1 cut(s) | 727 |
| BstMBI | GATC | 7 cut(s) | 137, 151, 228, 444, 586, 929, 1434 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 216, 1328, 1424, 1653 |
| BstNI | CCWGG | 6 cut(s) | 226, 339, 372, 499, 629, 1678 |
| BstNSI | RCATGY | 1 cut(s) | 1513 |
| BstPI | GGTNACC | 2 cut(s) | 233, 506 |
| BstSCI | CCNGG | 6 cut(s) | 224, 337, 370, 497, 627, 1676 |
| BstSLI | GKGCMC | 3 cut(s) | 301, 399, 574 |
| BstUI | CGCG | 2 cut(s) | 531, 1137 |
| BstV2I | GAAGAC | 2 cut(s) | 1019, 1302 |
| BstX2I | RGATCY | 3 cut(s) | 151, 929, 1434 |
| BstYI | RGATCY | 3 cut(s) | 151, 929, 1434 |
| Bsu15I | ATCGAT | 1 cut(s) | 136 |
| Bsu36I | CCTNAGG | 1 cut(s) | 401 |
| BsuRI | GGCC | 9 cut(s) | 199, 299, 375, 397, 572, 627, 1570, 1676, 1681 |
| BsuTUI | ATCGAT | 1 cut(s) | 136 |
| BtgI | CCRYGG | 1 cut(s) | 1443 |
| BtgZI | GCGATG | 1 cut(s) | 413 |
| BtrI | CACGTC | 1 cut(s) | 968 |
| BtsCI | GGATG | 6 cut(s) | 347, 420, 507, 1185, 1341, 1715 |
| BveI | ACCTGC | 1 cut(s) | 849 |
| Cac8I | GCNNGC | 3 cut(s) | 529, 807, 1654 |
| CciI | TCATGA | 2 cut(s) | 970, 1050 |
| Cfr13I | GGNCC | 8 cut(s) | 297, 298, 395, 396, 570, 571, 625, 1569 |
| ClaI | ATCGAT | 1 cut(s) | 136 |
| CseI | GACGC | 1 cut(s) | 864 |
| Csp6I | GTAC | 2 cut(s) | 886, 1453 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 129, 164 |
| CviQI | GTAC | 2 cut(s) | 886, 1453 |
| DdeI | CTNAG | 8 cut(s) | 215, 401, 611, 814, 822, 1290, 1449, 1633 |
| DpnI | GATC | 7 cut(s) | 139, 153, 230, 446, 588, 931, 1436 |
| DpnII | GATC | 7 cut(s) | 137, 151, 228, 444, 586, 929, 1434 |
| DraI | TTTAAA | 2 cut(s) | 682, 951 |
| EaeI | YGGCCR | 1 cut(s) | 373 |
| EciI | GGCGGA | 1 cut(s) | 1400 |
| Eco130I | CCWWGG | 2 cut(s) | 433, 1443 |
| Eco147I | AGGCCT | 2 cut(s) | 199, 1681 |
| Eco24I | GRGCYC | 5 cut(s) | 301, 338, 399, 574, 1222 |
| Eco57I | CTGAAG | 1 cut(s) | 486 |
| Eco81I | CCTNAGG | 1 cut(s) | 401 |
| Eco91I | GGTNACC | 2 cut(s) | 233, 506 |
| EcoO109I | RGGNCCY | 4 cut(s) | 297, 396, 570, 625 |
| EcoO65I | GGTNACC | 2 cut(s) | 233, 506 |
| EcoRII | CCWGG | 6 cut(s) | 224, 337, 370, 497, 627, 1676 |
| EcoT14I | CCWWGG | 2 cut(s) | 433, 1443 |
| EcoT38I | GRGCYC | 5 cut(s) | 301, 338, 399, 574, 1222 |
| ErhI | CCWWGG | 2 cut(s) | 433, 1443 |
| FauNDI | CATATG | 1 cut(s) | 829 |
| FblI | GTMKAC | 1 cut(s) | 868 |
| Fnu4HI | GCNGC | 1 cut(s) | 1739 |
| FokI | GGATG | 6 cut(s) | 354, 407, 514, 1192, 1328, 1722 |
| FriOI | GRGCYC | 5 cut(s) | 301, 338, 399, 574, 1222 |
| Fsp4HI | GCNGC | 1 cut(s) | 1739 |
| FspBI | CTAG | 6 cut(s) | 189, 434, 710, 1461, 1566, 1604 |
| GluI | GCNGC | 1 cut(s) | 1739 |
| GsaI | CCCAGC | 1 cut(s) | 1301 |
| HaeIII | GGCC | 9 cut(s) | 199, 299, 375, 397, 572, 627, 1570, 1676, 1681 |
| HgaI | GACGC | 1 cut(s) | 864 |
| HincII | GTYRAC | 1 cut(s) | 79 |
| HindII | GTYRAC | 1 cut(s) | 79 |
| HinfI | GANTC | 5 cut(s) | 329, 602, 917, 1191, 1501 |
| HpaI | GTTAAC | 1 cut(s) | 79 |
| HphI | GGTGA | 3 cut(s) | 245, 518, 1357 |
| Hpy166II | GTNNAC | 5 cut(s) | 79, 160, 869, 886, 1455 |
| Hpy188I | TCNGA | 5 cut(s) | 361, 466, 916, 1546, 1558 |
| Hpy188III | TCNNGA | 5 cut(s) | 91, 971, 1051, 1094, 1195 |
| Hpy8I | GTNNAC | 5 cut(s) | 79, 160, 869, 886, 1455 |
| Hpy99I | CGWCG | 2 cut(s) | 395, 858 |
| HpyAV | CCTTC | 4 cut(s) | 278, 967, 1011, 1287 |
| HpyCH4III | ACNGT | 3 cut(s) | 325, 598, 1153 |
| HpyCH4IV | ACGT | 1 cut(s) | 967 |
| HpyCH4V | TGCA | 4 cut(s) | 1149, 1160, 1227, 1513 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 216, 1328, 1424, 1653 |
| HpyF3I | CTNAG | 8 cut(s) | 215, 401, 611, 814, 822, 1290, 1449, 1633 |
| HpySE526I | ACGT | 1 cut(s) | 967 |
| KspAI | GTTAAC | 1 cut(s) | 79 |
| Kzo9I | GATC | 7 cut(s) | 137, 151, 228, 444, 586, 929, 1434 |
| LmnI | GCTCC | 3 cut(s) | 207, 1217, 1649 |
| LweI | GCATC | 4 cut(s) | 859, 1109, 1252, 1284 |
| MaeI | CTAG | 6 cut(s) | 189, 434, 710, 1461, 1566, 1604 |
| MaeII | ACGT | 1 cut(s) | 967 |
| MaeIII | GTNAC | 6 cut(s) | 233, 344, 416, 506, 745, 1715 |
| MalI | GATC | 7 cut(s) | 139, 153, 230, 446, 588, 931, 1436 |
| MboI | GATC | 7 cut(s) | 137, 151, 228, 444, 586, 929, 1434 |
| MboII | GAAGA | 5 cut(s) | 1019, 1095, 1135, 1272, 1302 |
| MflI | RGATCY | 3 cut(s) | 151, 929, 1434 |
| MhlI | GDGCHC | 6 cut(s) | 212, 301, 338, 399, 574, 1222 |
| MlyI | GAGTC | 3 cut(s) | 338, 611, 1510 |
| MmeI | TCCRAC | 2 cut(s) | 814, 1369 |
| MslI | CAYNNNNRTG | 4 cut(s) | 113, 654, 876, 1239 |
| MspR9I | CCNGG | 6 cut(s) | 226, 339, 372, 499, 629, 1678 |
| Mva1269I | GAATGC | 1 cut(s) | 219 |
| MvaI | CCWGG | 6 cut(s) | 226, 339, 372, 499, 629, 1678 |
| MvnI | CGCG | 2 cut(s) | 531, 1137 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 216, 1328, 1424, 1653 |
| NcoI | CCATGG | 1 cut(s) | 1443 |
| NdeI | CATATG | 1 cut(s) | 829 |
| NdeII | GATC | 7 cut(s) | 137, 151, 228, 444, 586, 929, 1434 |
| NmuCI | GTSAC | 4 cut(s) | 233, 344, 506, 745 |
| NspI | RCATGY | 1 cut(s) | 1513 |
| PagI | TCATGA | 2 cut(s) | 970, 1050 |
| PaqCI | CACCTGC | 1 cut(s) | 849 |
| PceI | AGGCCT | 2 cut(s) | 199, 1681 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 329, 602, 1668 |
| PctI | GAATGC | 1 cut(s) | 219 |
| PfeI | GAWTC | 2 cut(s) | 917, 1191 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 371 |
| PkrI | GCNGC | 1 cut(s) | 1740 |
| PleI | GAGTC | 3 cut(s) | 337, 610, 1509 |
| PpsI | GAGTC | 3 cut(s) | 337, 610, 1509 |
| PshBI | ATTAAT | 1 cut(s) | 1403 |
| Psp6I | CCWGG | 6 cut(s) | 224, 337, 370, 497, 627, 1676 |
| PspEI | GGTNACC | 2 cut(s) | 233, 506 |
| PspFI | CCCAGC | 1 cut(s) | 1297 |
| PspGI | CCWGG | 6 cut(s) | 224, 337, 370, 497, 627, 1676 |
| PspOMI | GGGCCC | 3 cut(s) | 297, 395, 570 |
| PspPI | GGNCC | 8 cut(s) | 297, 298, 395, 396, 570, 571, 625, 1569 |
| PsuI | RGATCY | 3 cut(s) | 151, 929, 1434 |
| RsaI | GTAC | 2 cut(s) | 887, 1454 |
| RsaNI | GTAC | 2 cut(s) | 886, 1453 |
| RseI | CAYNNNNRTG | 4 cut(s) | 113, 654, 876, 1239 |
| SatI | GCNGC | 1 cut(s) | 1739 |
| Sau3AI | GATC | 7 cut(s) | 137, 151, 228, 444, 586, 929, 1434 |
| Sau96I | GGNCC | 8 cut(s) | 297, 298, 395, 396, 570, 571, 625, 1569 |
| SchI | GAGTC | 3 cut(s) | 338, 611, 1510 |
| ScrFI | CCNGG | 6 cut(s) | 226, 339, 372, 499, 629, 1678 |
| SduI | GDGCHC | 6 cut(s) | 212, 301, 338, 399, 574, 1222 |
| SfaNI | GCATC | 4 cut(s) | 859, 1109, 1252, 1284 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 113, 654, 876, 1239 |
| SmlI | CTYRAG | 1 cut(s) | 1195 |
| SmoI | CTYRAG | 1 cut(s) | 1195 |
| SseBI | AGGCCT | 2 cut(s) | 199, 1681 |
| SsiI | CCGC | 6 cut(s) | 306, 1329, 1371, 1411, 1647, 1738 |
| SspI | AATATT | 1 cut(s) | 798 |
| SspMI | CTAG | 6 cut(s) | 189, 434, 710, 1461, 1566, 1604 |
| StuI | AGGCCT | 2 cut(s) | 199, 1681 |
| StyD4I | CCNGG | 6 cut(s) | 224, 337, 370, 497, 627, 1676 |
| StyI | CCWWGG | 2 cut(s) | 433, 1443 |
| TaaI | ACNGT | 3 cut(s) | 325, 598, 1153 |
| TaiI | ACGT | 1 cut(s) | 970 |
| TaqI | TCGA | 6 cut(s) | 136, 332, 605, 853, 1030, 1662 |
| TatI | WGTACW | 1 cut(s) | 1452 |
| TauI | GCSGC | 1 cut(s) | 1741 |
| TfiI | GAWTC | 2 cut(s) | 917, 1191 |
| TseFI | GTSAC | 4 cut(s) | 233, 344, 506, 745 |
| Tsp45I | GTSAC | 4 cut(s) | 233, 344, 506, 745 |
| TspDTI | ATGAA | 9 cut(s) | 297, 443, 651, 987, 1067, 1201, 1307, 1319, 1380 |
| TspGWI | ACGGA | 2 cut(s) | 594, 733 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 371 |
| VspI | ATTAAT | 1 cut(s) | 1403 |
| XapI | RAATTY | 3 cut(s) | 35, 842, 1267 |
| XceI | RCATGY | 1 cut(s) | 1513 |
| XmaJI | CCTAGG | 1 cut(s) | 433 |
| XmiI | GTMKAC | 1 cut(s) | 868 |
| XspI | CTAG | 6 cut(s) | 189, 434, 710, 1461, 1566, 1604 |