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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 23 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 579 |
| AccBSI | CCGCTC | 1 cut(s) | 616 |
| AccII | CGCG | 1 cut(s) | 94 |
| AciI | CCGC | 2 cut(s) | 94, 614 |
| AclWI | GGATC | 2 cut(s) | 714, 1374 |
| AcoI | YGGCCR | 2 cut(s) | 95, 594 |
| AcsI | RAATTY | 2 cut(s) | 144, 1020 |
| AfaI | GTAC | 1 cut(s) | 965 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 337, 449, 450, 564, 565, 597, 718, 905 |
| AflII | CTTAAG | 1 cut(s) | 562 |
| AgsI | TTSAA | 6 cut(s) | 179, 253, 268, 903, 971, 1094 |
| AjnI | CCWGG | 4 cut(s) | 528, 596, 606, 837 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1168, 1200 |
| AluBI | AGCT | 3 cut(s) | 773, 781, 1090 |
| AluI | AGCT | 3 cut(s) | 773, 781, 1090 |
| Alw21I | GWGCWC | 2 cut(s) | 783, 1045 |
| Alw26I | GTCTC | 1 cut(s) | 227 |
| AlwI | GGATC | 2 cut(s) | 714, 1374 |
| Ama87I | CYCGRG | 1 cut(s) | 337 |
| AoxI | GGCC | 4 cut(s) | 95, 567, 594, 649 |
| ApaI | GGGCCC | 2 cut(s) | 571, 653 |
| ApoI | RAATTY | 2 cut(s) | 144, 1020 |
| AspS9I | GGNCC | 8 cut(s) | 380, 567, 568, 610, 649, 650, 1082, 1124 |
| AsuC2I | CCSGG | 2 cut(s) | 338, 339 |
| AsuHPI | GGTGA | 2 cut(s) | 432, 701 |
| AvaI | CYCGRG | 1 cut(s) | 337 |
| AvaII | GGWCC | 4 cut(s) | 380, 610, 1082, 1124 |
| BaeGI | GKGCMC | 2 cut(s) | 571, 653 |
| BalI | TGGCCA | 1 cut(s) | 596 |
| BanII | GRGCYC | 4 cut(s) | 344, 571, 653, 783 |
| BauI | CACGAG | 2 cut(s) | 419, 794 |
| BbsI | GAAGAC | 1 cut(s) | 1194 |
| Bbv12I | GWGCWC | 2 cut(s) | 783, 1045 |
| BccI | CCATC | 3 cut(s) | 360, 453, 721 |
| BceAI | ACGGC | 1 cut(s) | 82 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 1349 |
| BciT130I | CCWGG | 4 cut(s) | 530, 598, 608, 839 |
| BciVI | GTATCC | 2 cut(s) | 935, 1118 |
| BcnI | CCSGG | 2 cut(s) | 338, 339 |
| BcoDI | GTCTC | 1 cut(s) | 227 |
| BfaI | CTAG | 4 cut(s) | 432, 774, 800, 1073 |
| BfmI | CTRYAG | 1 cut(s) | 213 |
| BfrI | CTTAAG | 1 cut(s) | 562 |
| BfuI | GTATCC | 2 cut(s) | 935, 1118 |
| BisI | GCNGC | 1 cut(s) | 95 |
| BlsI | GCNGC | 1 cut(s) | 96 |
| Bme1390I | CCNGG | 6 cut(s) | 338, 339, 530, 598, 608, 839 |
| Bme18I | GGWCC | 4 cut(s) | 380, 610, 1082, 1124 |
| BmeT110I | CYCGRG | 1 cut(s) | 337 |
| BmgT120I | GGNCC | 8 cut(s) | 380, 567, 568, 610, 649, 650, 1082, 1124 |
| BmiI | GGNNCC | 7 cut(s) | 381, 382, 497, 569, 612, 651, 765 |
| BmrFI | CCNGG | 6 cut(s) | 338, 339, 530, 598, 608, 839 |
| BpiI | GAAGAC | 1 cut(s) | 1194 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1086 |
| BpuEI | CTTGAG | 2 cut(s) | 96, 931 |
| BpuMI | CCSGG | 2 cut(s) | 338, 339 |
| Bsa29I | ATCGAT | 2 cut(s) | 294, 996 |
| BsaJI | CCNNGG | 6 cut(s) | 337, 528, 529, 591, 837, 838 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 337, 449, 450, 564, 565, 597, 718, 905 |
| Bse1I | ACTGG | 1 cut(s) | 642 |
| Bse3DI | GCAATG | 1 cut(s) | 77 |
| BseBI | CCWGG | 4 cut(s) | 530, 598, 608, 839 |
| BseCI | ATCGAT | 2 cut(s) | 294, 996 |
| BseDI | CCNNGG | 6 cut(s) | 337, 528, 529, 591, 837, 838 |
| BseGI | GGATG | 3 cut(s) | 574, 857, 1313 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 337, 449, 450, 564, 565, 597, 718, 905 |
| BseMI | GCAATG | 1 cut(s) | 77 |
| BseMII | CTCAG | 1 cut(s) | 1279 |
| BseNI | ACTGG | 1 cut(s) | 642 |
| BseSI | GKGCMC | 2 cut(s) | 571, 653 |
| BseX3I | CGGCCG | 1 cut(s) | 95 |
| Bsh1236I | CGCG | 1 cut(s) | 94 |
| Bsh1285I | CGRYCG | 1 cut(s) | 98 |
| BshFI | GGCC | 4 cut(s) | 97, 569, 596, 651 |
| BshVI | ATCGAT | 2 cut(s) | 294, 996 |
| BsiEI | CGRYCG | 1 cut(s) | 98 |
| BsiHKAI | GWGCWC | 2 cut(s) | 783, 1045 |
| BsiHKCI | CYCGRG | 1 cut(s) | 337 |
| BsiSI | CCGG | 1 cut(s) | 338 |
| BslFI | GGGAC | 1 cut(s) | 366 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 337, 449, 450, 564, 565, 597, 718, 905 |
| BsmAI | GTCTC | 1 cut(s) | 227 |
| BsmBI | CGTCTC | 1 cut(s) | 227 |
| BsmFI | GGGAC | 1 cut(s) | 366 |
| BsnI | GGCC | 4 cut(s) | 97, 569, 596, 651 |
| BsoBI | CYCGRG | 1 cut(s) | 337 |
| Bsp120I | GGGCCC | 2 cut(s) | 567, 649 |
| Bsp1286I | GDGCHC | 5 cut(s) | 344, 571, 653, 783, 1045 |
| Bsp1407I | TGTACA | 1 cut(s) | 963 |
| Bsp143I | GATC | 5 cut(s) | 237, 690, 706, 933, 1366 |
| Bsp19I | CCATGG | 1 cut(s) | 591 |
| BspACI | CCGC | 2 cut(s) | 94, 614 |
| BspANI | GGCC | 4 cut(s) | 97, 569, 596, 651 |
| BspCNI | CTCAG | 1 cut(s) | 1278 |
| BspDI | ATCGAT | 2 cut(s) | 294, 996 |
| BspFNI | CGCG | 1 cut(s) | 94 |
| BspLI | GGNNCC | 7 cut(s) | 381, 382, 497, 569, 612, 651, 765 |
| BspPI | GGATC | 2 cut(s) | 714, 1374 |
| BspTI | CTTAAG | 1 cut(s) | 562 |
| BsrBI | CCGCTC | 1 cut(s) | 616 |
| BsrDI | GCAATG | 1 cut(s) | 77 |
| BsrGI | TGTACA | 1 cut(s) | 963 |
| BsrI | ACTGG | 1 cut(s) | 642 |
| BssECI | CCNNGG | 6 cut(s) | 337, 528, 529, 591, 837, 838 |
| BssMI | GATC | 5 cut(s) | 237, 690, 706, 933, 1366 |
| BssSI | CACGAG | 2 cut(s) | 419, 794 |
| BssT1I | CCWWGG | 1 cut(s) | 591 |
| Bst2BI | CACGAG | 2 cut(s) | 419, 794 |
| Bst2UI | CCWGG | 4 cut(s) | 530, 598, 608, 839 |
| Bst4CI | ACNGT | 4 cut(s) | 308, 400, 868, 1200 |
| BstAFI | CTTAAG | 1 cut(s) | 562 |
| BstAUI | TGTACA | 1 cut(s) | 963 |
| BstC8I | GCNNGC | 1 cut(s) | 344 |
| BstDEI | CTNAG | 3 cut(s) | 1026, 1086, 1265 |
| BstDSI | CCRYGG | 1 cut(s) | 591 |
| BstEII | GGTNACC | 1 cut(s) | 438 |
| BstF5I | GGATG | 3 cut(s) | 574, 857, 1313 |
| BstFNI | CGCG | 1 cut(s) | 94 |
| BstKTI | GATC | 5 cut(s) | 240, 693, 709, 936, 1369 |
| BstMAI | GTCTC | 1 cut(s) | 227 |
| BstMBI | GATC | 5 cut(s) | 237, 690, 706, 933, 1366 |
| BstMCI | CGRYCG | 1 cut(s) | 98 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1319 |
| BstNI | CCWGG | 4 cut(s) | 530, 598, 608, 839 |
| BstPI | GGTNACC | 1 cut(s) | 438 |
| BstSCI | CCNGG | 6 cut(s) | 336, 337, 528, 596, 606, 837 |
| BstSFI | CTRYAG | 1 cut(s) | 213 |
| BstSLI | GKGCMC | 2 cut(s) | 571, 653 |
| BstUI | CGCG | 1 cut(s) | 94 |
| BstV2I | GAAGAC | 1 cut(s) | 1194 |
| BstZI | CGGCCG | 1 cut(s) | 95 |
| Bsu15I | ATCGAT | 2 cut(s) | 294, 996 |
| BsuI | GTATCC | 2 cut(s) | 935, 1118 |
| BsuRI | GGCC | 4 cut(s) | 97, 569, 596, 651 |
| BsuTUI | ATCGAT | 2 cut(s) | 294, 996 |
| BtgI | CCRYGG | 1 cut(s) | 591 |
| BtgZI | GCGATG | 2 cut(s) | 549, 858 |
| BtsCI | GGATG | 3 cut(s) | 574, 857, 1313 |
| BtsIMutI | CAGTG | 2 cut(s) | 864, 1196 |
| Cac8I | GCNNGC | 1 cut(s) | 344 |
| Cfr13I | GGNCC | 8 cut(s) | 380, 567, 568, 610, 649, 650, 1082, 1124 |
| Cfr9I | CCCGGG | 1 cut(s) | 337 |
| ClaI | ATCGAT | 2 cut(s) | 294, 996 |
| Csp6I | GTAC | 1 cut(s) | 964 |
| CviAII | CATG | 6 cut(s) | 220, 361, 449, 592, 717, 1016 |
| CviQI | GTAC | 1 cut(s) | 964 |
| DdeI | CTNAG | 3 cut(s) | 1026, 1086, 1265 |
| DpnI | GATC | 5 cut(s) | 239, 692, 708, 935, 1368 |
| DpnII | GATC | 5 cut(s) | 237, 690, 706, 933, 1366 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 579 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 579 |
| EaeI | YGGCCR | 2 cut(s) | 95, 594 |
| EagI | CGGCCG | 1 cut(s) | 95 |
| Ecl136II | GAGCTC | 1 cut(s) | 781 |
| EclXI | CGGCCG | 1 cut(s) | 95 |
| Eco130I | CCWWGG | 1 cut(s) | 591 |
| Eco24I | GRGCYC | 4 cut(s) | 344, 571, 653, 783 |
| Eco32I | GATATC | 1 cut(s) | 1278 |
| Eco47I | GGWCC | 4 cut(s) | 380, 610, 1082, 1124 |
| Eco52I | CGGCCG | 1 cut(s) | 95 |
| Eco53kI | GAGCTC | 1 cut(s) | 781 |
| Eco88I | CYCGRG | 1 cut(s) | 337 |
| Eco91I | GGTNACC | 1 cut(s) | 438 |
| EcoICRI | GAGCTC | 1 cut(s) | 781 |
| EcoO109I | RGGNCCY | 3 cut(s) | 380, 567, 650 |
| EcoO65I | GGTNACC | 1 cut(s) | 438 |
| EcoRII | CCWGG | 4 cut(s) | 528, 596, 606, 837 |
| EcoRV | GATATC | 1 cut(s) | 1278 |
| EcoT14I | CCWWGG | 1 cut(s) | 591 |
| EcoT38I | GRGCYC | 4 cut(s) | 344, 571, 653, 783 |
| ErhI | CCWWGG | 1 cut(s) | 591 |
| Esp3I | CGTCTC | 1 cut(s) | 227 |
| FaeI | CATG | 6 cut(s) | 223, 364, 452, 595, 720, 1019 |
| FaqI | GGGAC | 1 cut(s) | 366 |
| FatI | CATG | 6 cut(s) | 219, 360, 448, 591, 716, 1015 |
| FauI | CCCGC | 1 cut(s) | 621 |
| FauNDI | CATATG | 1 cut(s) | 120 |
| Fnu4HI | GCNGC | 1 cut(s) | 95 |
| FokI | GGATG | 3 cut(s) | 561, 864, 1320 |
| FriOI | GRGCYC | 4 cut(s) | 344, 571, 653, 783 |
| Fsp4HI | GCNGC | 1 cut(s) | 95 |
| FspBI | CTAG | 4 cut(s) | 432, 774, 800, 1073 |
| GluI | GCNGC | 1 cut(s) | 95 |
| HaeIII | GGCC | 4 cut(s) | 97, 569, 596, 651 |
| HapII | CCGG | 1 cut(s) | 338 |
| Hin1II | CATG | 6 cut(s) | 223, 364, 452, 595, 720, 1019 |
| HindIII | AAGCTT | 1 cut(s) | 1088 |
| HinfI | GANTC | 3 cut(s) | 886, 998, 1094 |
| HpaII | CCGG | 1 cut(s) | 338 |
| HphI | GGTGA | 2 cut(s) | 432, 701 |
| Hpy166II | GTNNAC | 2 cut(s) | 205, 372 |
| Hpy188I | TCNGA | 3 cut(s) | 484, 752, 885 |
| Hpy188III | TCNNGA | 7 cut(s) | 138, 191, 383, 419, 688, 890, 948 |
| Hpy8I | GTNNAC | 2 cut(s) | 205, 372 |
| HpyAV | CCTTC | 2 cut(s) | 95, 909 |
| HpyCH4III | ACNGT | 4 cut(s) | 308, 400, 868, 1200 |
| HpyCH4IV | ACGT | 2 cut(s) | 895, 938 |
| HpyCH4V | TGCA | 5 cut(s) | 82, 124, 200, 328, 1171 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1319 |
| HpyF3I | CTNAG | 3 cut(s) | 1026, 1086, 1265 |
| HpySE526I | ACGT | 2 cut(s) | 895, 938 |
| Hsp92II | CATG | 6 cut(s) | 223, 364, 452, 595, 720, 1019 |
| KflI | GGGWCCC | 1 cut(s) | 380 |
| Kzo9I | GATC | 5 cut(s) | 237, 690, 706, 933, 1366 |
| LmnI | GCTCC | 2 cut(s) | 351, 621 |
| MaeI | CTAG | 4 cut(s) | 432, 774, 800, 1073 |
| MaeII | ACGT | 2 cut(s) | 895, 938 |
| MaeIII | GTNAC | 5 cut(s) | 277, 356, 438, 545, 854 |
| MalI | GATC | 5 cut(s) | 239, 692, 708, 935, 1368 |
| MbiI | CCGCTC | 1 cut(s) | 616 |
| MboI | GATC | 5 cut(s) | 237, 690, 706, 933, 1366 |
| MboII | GAAGA | 1 cut(s) | 1194 |
| MfeI | CAATTG | 2 cut(s) | 248, 903 |
| MhlI | GDGCHC | 5 cut(s) | 344, 571, 653, 783, 1045 |
| MlsI | TGGCCA | 1 cut(s) | 596 |
| MluNI | TGGCCA | 1 cut(s) | 596 |
| MlyI | GAGTC | 1 cut(s) | 880 |
| MmeI | TCCRAC | 1 cut(s) | 1344 |
| MnlI | CCTC | 8 cut(s) | 304, 404, 588, 803, 944, 1022, 1298, 1299 |
| Mox20I | TGGCCA | 1 cut(s) | 596 |
| MscI | TGGCCA | 1 cut(s) | 596 |
| MseI | TTAA | 6 cut(s) | 476, 563, 744, 1050, 1272, 1350 |
| MslI | CAYNNNNRTG | 2 cut(s) | 275, 1006 |
| Msp20I | TGGCCA | 1 cut(s) | 596 |
| MspCI | CTTAAG | 1 cut(s) | 562 |
| MspI | CCGG | 1 cut(s) | 338 |
| MspR9I | CCNGG | 6 cut(s) | 338, 339, 530, 598, 608, 839 |
| MunI | CAATTG | 2 cut(s) | 248, 903 |
| MvaI | CCWGG | 4 cut(s) | 530, 598, 608, 839 |
| MvnI | CGCG | 1 cut(s) | 94 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1319 |
| NciI | CCSGG | 2 cut(s) | 338, 339 |
| NcoI | CCATGG | 1 cut(s) | 591 |
| NdeI | CATATG | 1 cut(s) | 120 |
| NdeII | GATC | 5 cut(s) | 237, 690, 706, 933, 1366 |
| NlaIII | CATG | 6 cut(s) | 223, 364, 452, 595, 720, 1019 |
| NlaIV | GGNNCC | 7 cut(s) | 381, 382, 497, 569, 612, 651, 765 |
| NmuCI | GTSAC | 3 cut(s) | 277, 438, 545 |
| PasI | CCCWGGG | 2 cut(s) | 529, 838 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1184 |
| PfeI | GAWTC | 2 cut(s) | 998, 1094 |
| PfoI | TCCNGGA | 1 cut(s) | 606 |
| PkrI | GCNGC | 1 cut(s) | 96 |
| PleI | GAGTC | 1 cut(s) | 880 |
| PpsI | GAGTC | 1 cut(s) | 880 |
| PpuMI | RGGWCCY | 1 cut(s) | 380 |
| PsiI | TTATAA | 1 cut(s) | 23 |
| Psp124BI | GAGCTC | 1 cut(s) | 783 |
| Psp5II | RGGWCCY | 1 cut(s) | 380 |
| Psp6I | CCWGG | 4 cut(s) | 528, 596, 606, 837 |
| PspEI | GGTNACC | 1 cut(s) | 438 |
| PspGI | CCWGG | 4 cut(s) | 528, 596, 606, 837 |
| PspN4I | GGNNCC | 7 cut(s) | 381, 382, 497, 569, 612, 651, 765 |
| PspOMI | GGGCCC | 2 cut(s) | 567, 649 |
| PspPI | GGNCC | 8 cut(s) | 380, 567, 568, 610, 649, 650, 1082, 1124 |
| PspPPI | RGGWCCY | 1 cut(s) | 380 |
| RsaI | GTAC | 1 cut(s) | 965 |
| RsaNI | GTAC | 1 cut(s) | 964 |
| RseI | CAYNNNNRTG | 2 cut(s) | 275, 1006 |
| SacI | GAGCTC | 1 cut(s) | 783 |
| SaqAI | TTAA | 6 cut(s) | 476, 563, 744, 1050, 1272, 1350 |
| SatI | GCNGC | 1 cut(s) | 95 |
| Sau3AI | GATC | 5 cut(s) | 237, 690, 706, 933, 1366 |
| Sau96I | GGNCC | 8 cut(s) | 380, 567, 568, 610, 649, 650, 1082, 1124 |
| SchI | GAGTC | 1 cut(s) | 880 |
| ScrFI | CCNGG | 6 cut(s) | 338, 339, 530, 598, 608, 839 |
| SduI | GDGCHC | 5 cut(s) | 344, 571, 653, 783, 1045 |
| SfcI | CTRYAG | 1 cut(s) | 213 |
| SinI | GGWCC | 4 cut(s) | 380, 610, 1082, 1124 |
| SmaI | CCCGGG | 1 cut(s) | 339 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 275, 1006 |
| SmlI | CTYRAG | 3 cut(s) | 111, 562, 946 |
| SmoI | CTYRAG | 3 cut(s) | 111, 562, 946 |
| SsiI | CCGC | 2 cut(s) | 94, 614 |
| SspMI | CTAG | 4 cut(s) | 432, 774, 800, 1073 |
| SstI | GAGCTC | 1 cut(s) | 783 |
| StyD4I | CCNGG | 6 cut(s) | 336, 337, 528, 596, 606, 837 |
| StyI | CCWWGG | 1 cut(s) | 591 |
| TaaI | ACNGT | 4 cut(s) | 308, 400, 868, 1200 |
| TaiI | ACGT | 2 cut(s) | 898, 941 |
| TaqI | TCGA | 6 cut(s) | 45, 294, 932, 996, 1303, 1369 |
| TatI | WGTACW | 1 cut(s) | 963 |
| TauI | GCSGC | 1 cut(s) | 97 |
| TfiI | GAWTC | 2 cut(s) | 998, 1094 |
| Tru1I | TTAA | 6 cut(s) | 476, 563, 744, 1050, 1272, 1350 |
| Tru9I | TTAA | 6 cut(s) | 476, 563, 744, 1050, 1272, 1350 |
| TscAI | CASTG | 2 cut(s) | 871, 1203 |
| TseFI | GTSAC | 3 cut(s) | 277, 438, 545 |
| Tsp45I | GTSAC | 3 cut(s) | 277, 438, 545 |
| TspDTI | ATGAA | 7 cut(s) | 4, 66, 236, 990, 1032, 1104, 1242 |
| TspGWI | ACGGA | 3 cut(s) | 508, 776, 1176 |
| TspMI | CCCGGG | 1 cut(s) | 337 |
| TspRI | CASTG | 2 cut(s) | 871, 1203 |
| Vha464I | CTTAAG | 1 cut(s) | 562 |
| VpaK11BI | GGWCC | 4 cut(s) | 380, 610, 1082, 1124 |
| XapI | RAATTY | 2 cut(s) | 144, 1020 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 604 |
| XmaI | CCCGGG | 1 cut(s) | 337 |
| XspI | CTAG | 4 cut(s) | 432, 774, 800, 1073 |