pycom13g24140

lysM domain receptor-like kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
21362237 .. 21363349
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g24140.3

Sequence Viewer

Length: 897 bp
ATGCAGATCGATCCTCGCCTTAAGCGGGTGACGCGCAGCTACGAAGAGGATTGCCGGGAATGGGCGATGGTGGAATTGCAAGGGGCGGTGGAAATTCAGCCACAATTTCAAGACCACCTCCTTTTGCAGCACCTGCCCTGGAAAATTGAAGCAGTTTCAACTCTTCCGGGAGTGATGGAATCGAAACAAATGTATTCGAATGTGTTTATGTATGTGACTCATTGCAAACAAACATTACTCTCTCTCACGGCCTTGCATGGCTGCTGGGAAATTGTGCAGATTTTGTGTAATTATTGGTTCAAAGGTTTATTAATCCATCAAAGCTGGATTAACTCATTATTTCAATGTATTATCAAATTATTATTAAGGAAGGGAATTGTTTGGGCCCAAAATAATATTGTTGGGCCGAGCAGCAGGATGTGCTCGGCCCAAGGTTATGTCATACTATGGTCCTATCCTAAAGTAATCTGGATAAATAGAAAAGGTCGAGGGAGTCCTGGTGCGACCAGGATTCCCGACCGGCAAAGAATAAAGCCTCGAAATGAAGGAAAATTCAGAATCCCAGTGGGAGTAGGTTTGTTCGAGTTAGAGTTGAAACGGGACAAGGACTCCCAATCCAAATTAGAATGCGAATCGAAAAACCCCTTCAAATCAGTATACAATTGCCCTGCGCAAAACCTCTCAAATACCTTGAGATTTTTCCTTTTCCTTTTCCGCCGACACACCTTCAGTTTGGATAAACACACTGCTACCGCAGAGTCAGCCGACCGAGAAGCACCTTCAGTTTGGATAAACAGCACTGCATCGAGGTCGACCGGTTACCTATCTAAGTCTCGGCCGAGAAGGGTTTTCGAACCTTTGTTGGCAGAGGTCACCTTGCTAGCCTTCTCGGCATAG

Protein Analysis

299

Amino Acids

34.44

Weight (kDa)

9.61

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 141
Acc16I TGCGCA 1 cut(s) 672
Acc36I ACCTGC 1 cut(s) 141
AccI GTMKAC 2 cut(s) 657, 812
AccII CGCG 1 cut(s) 34
AciI CCGC 4 cut(s) 25, 86, 715, 753
AclWI GGATC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 836
AcsI RAATTY 2 cut(s) 93, 551
AcuI CTGAAG 2 cut(s) 712, 765
AfiI CCNNNNNNNGG 2 cut(s) 25, 61
AflII CTTAAG 1 cut(s) 20
AgeI ACCGGT 1 cut(s) 815
AgsI TTSAA 7 cut(s) 110, 149, 159, 301, 344, 595, 649
AjnI CCWGG 3 cut(s) 137, 496, 506
AluBI AGCT 2 cut(s) 39, 324
AluI AGCT 2 cut(s) 39, 324
Alw21I GWGCWC 1 cut(s) 425
Alw26I GTCTC 1 cut(s) 837
AlwI GGATC 1 cut(s) 5
AlwNI CAGNNNCTG 1 cut(s) 133
AoxI GGCC 5 cut(s) 249, 384, 404, 426, 836
ApaI GGGCCC 1 cut(s) 388
ApeKI GCWGC 4 cut(s) 36, 127, 261, 411
ApoI RAATTY 2 cut(s) 93, 551
AseI ATTAAT 1 cut(s) 311
AsiGI ACCGGT 1 cut(s) 815
AspLEI GCGC 2 cut(s) 36, 673
AspS9I GGNCC 5 cut(s) 384, 385, 404, 427, 450
AsuC2I CCSGG 2 cut(s) 56, 168
AsuHPI GGTGA 2 cut(s) 40, 865
AsuII TTCGAA 2 cut(s) 197, 852
AsuNHI GCTAGC 1 cut(s) 880
AvaII GGWCC 1 cut(s) 450
BaeGI GKGCMC 1 cut(s) 388
BanII GRGCYC 1 cut(s) 388
Bbv12I GWGCWC 1 cut(s) 425
BbvI GCAGC 4 cut(s) 48, 139, 248, 423
BccI CCATC 3 cut(s) 61, 169, 324
BceAI ACGGC 1 cut(s) 264
BcgI CGANNNNNNTGC 2 cut(s) 792, 826
BciT130I CCWGG 3 cut(s) 139, 498, 508
BcnI CCSGG 2 cut(s) 56, 168
BcoDI GTCTC 1 cut(s) 837
BfaI CTAG 1 cut(s) 881
BfrI CTTAAG 1 cut(s) 20
BfuAI ACCTGC 1 cut(s) 141
BglI GCCNNNNNGGC 1 cut(s) 890
BisI GCNGC 4 cut(s) 37, 128, 262, 412
BlsI GCNGC 4 cut(s) 38, 129, 263, 413
Bme1390I CCNGG 5 cut(s) 56, 139, 168, 498, 508
Bme18I GGWCC 1 cut(s) 450
BmgT120I GGNCC 5 cut(s) 384, 385, 404, 427, 450
BmiI GGNNCC 1 cut(s) 386
BmrFI CCNGG 5 cut(s) 56, 139, 168, 498, 508
BmrI ACTGGG 1 cut(s) 557
BmsI GCATC 1 cut(s) 812
BmtI GCTAGC 1 cut(s) 884
BmuI ACTGGG 1 cut(s) 557
Bpu14I TTCGAA 2 cut(s) 197, 852
BpuEI CTTGAG 1 cut(s) 712
BpuMI CCSGG 2 cut(s) 56, 168
Bsa29I ATCGAT 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 137, 430
BsaWI WCCGGW 1 cut(s) 815
BsaXI ACNNNNNCTCC 4 cut(s) 484, 514, 593, 623
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 61
Bse118I RCCGGY 2 cut(s) 519, 815
Bse1I ACTGG 1 cut(s) 563
Bse3DI GCAATG 1 cut(s) 220
BseBI CCWGG 3 cut(s) 139, 498, 508
BseCI ATCGAT 1 cut(s) 9
BseDI CCNNGG 2 cut(s) 137, 430
BseGI GGATG 1 cut(s) 423
BseLI CCNNNNNNNGG 2 cut(s) 25, 61
BseMI GCAATG 1 cut(s) 220
BseNI ACTGG 1 cut(s) 563
BseSI GKGCMC 1 cut(s) 388
BseX3I CGGCCG 1 cut(s) 836
BseXI GCAGC 4 cut(s) 48, 139, 248, 423
BseYI CCCAGC 1 cut(s) 264
BsgI GTGCAG 1 cut(s) 296
Bsh1236I CGCG 1 cut(s) 34
Bsh1285I CGRYCG 4 cut(s) 520, 769, 816, 839
BshFI GGCC 5 cut(s) 251, 386, 406, 428, 838
BshTI ACCGGT 1 cut(s) 815
BshVI ATCGAT 1 cut(s) 9
BsiEI CGRYCG 4 cut(s) 520, 769, 816, 839
BsiHKAI GWGCWC 1 cut(s) 425
BsiSI CCGG 4 cut(s) 55, 167, 520, 816
BslFI GGGAC 1 cut(s) 614
BslI CCNNNNNNNGG 2 cut(s) 25, 61
BsmAI GTCTC 1 cut(s) 837
BsmFI GGGAC 1 cut(s) 614
BsmI GAATGC 1 cut(s) 632
BsnI GGCC 5 cut(s) 251, 386, 406, 428, 838
Bsp119I TTCGAA 2 cut(s) 197, 852
Bsp120I GGGCCC 1 cut(s) 384
Bsp1286I GDGCHC 2 cut(s) 388, 425
Bsp143I GATC 2 cut(s) 6, 10
BspACI CCGC 4 cut(s) 25, 86, 715, 753
BspANI GGCC 5 cut(s) 251, 386, 406, 428, 838
BspDI ATCGAT 1 cut(s) 9
BspFNI CGCG 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 386
BspMI ACCTGC 1 cut(s) 141
BspOI GCTAGC 1 cut(s) 884
BspPI GGATC 1 cut(s) 5
BspT104I TTCGAA 2 cut(s) 197, 852
BspTI CTTAAG 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 220
BsrFI RCCGGY 2 cut(s) 519, 815
BsrI ACTGG 1 cut(s) 563
BssAI RCCGGY 2 cut(s) 519, 815
BssECI CCNNGG 2 cut(s) 137, 430
BssMI GATC 2 cut(s) 6, 10
BssNAI GTATAC 1 cut(s) 658
BssT1I CCWWGG 1 cut(s) 430
Bst1107I GTATAC 1 cut(s) 658
Bst2UI CCWGG 3 cut(s) 139, 498, 508
Bst6I CTCTTC 2 cut(s) 39, 168
BstAFI CTTAAG 1 cut(s) 20
BstAPI GCANNNNNTGC 2 cut(s) 133, 420
BstBI TTCGAA 2 cut(s) 197, 852
BstC8I GCNNGC 1 cut(s) 882
BstDEI CTNAG 1 cut(s) 828
BstEII GGTNACC 2 cut(s) 818, 871
BstF5I GGATG 1 cut(s) 423
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 2 cut(s) 36, 673
BstKTI GATC 2 cut(s) 9, 13
BstMAI GTCTC 1 cut(s) 837
BstMBI GATC 2 cut(s) 6, 10
BstMCI CGRYCG 4 cut(s) 520, 769, 816, 839
BstMWI GCNNNNNNNGC 5 cut(s) 31, 133, 420, 761, 890
BstNI CCWGG 3 cut(s) 139, 498, 508
BstPI GGTNACC 2 cut(s) 818, 871
BstSCI CCNGG 5 cut(s) 54, 137, 166, 496, 506
BstSLI GKGCMC 1 cut(s) 388
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 4 cut(s) 48, 139, 248, 423
BstZ17I GTATAC 1 cut(s) 658
BstZI CGGCCG 1 cut(s) 836
Bsu15I ATCGAT 1 cut(s) 9
BsuRI GGCC 5 cut(s) 251, 386, 406, 428, 838
BsuTUI ATCGAT 1 cut(s) 9
BtgZI GCGATG 1 cut(s) 80
BtsCI GGATG 1 cut(s) 423
BtsI GCAGTG 2 cut(s) 744, 798
BtsIMutI CAGTG 3 cut(s) 570, 744, 798
BveI ACCTGC 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 882
CaiI CAGNNNCTG 1 cut(s) 133
CfoI GCGC 2 cut(s) 36, 673
Cfr10I RCCGGY 2 cut(s) 519, 815
Cfr13I GGNCC 5 cut(s) 384, 385, 404, 427, 450
ClaI ATCGAT 1 cut(s) 9
CseI GACGC 1 cut(s) 40
CspAI ACCGGT 1 cut(s) 815
CviAII CATG 1 cut(s) 257
DdeI CTNAG 1 cut(s) 828
DpnI GATC 2 cut(s) 8, 12
DpnII GATC 2 cut(s) 6, 10
EaeI YGGCCR 1 cut(s) 836
EagI CGGCCG 1 cut(s) 836
Eam1104I CTCTTC 2 cut(s) 39, 168
EarI CTCTTC 2 cut(s) 39, 168
EciI GGCGGA 1 cut(s) 704
EclXI CGGCCG 1 cut(s) 836
Eco130I CCWWGG 1 cut(s) 430
Eco24I GRGCYC 1 cut(s) 388
Eco47I GGWCC 1 cut(s) 450
Eco52I CGGCCG 1 cut(s) 836
Eco57I CTGAAG 2 cut(s) 712, 765
Eco91I GGTNACC 2 cut(s) 818, 871
EcoO65I GGTNACC 2 cut(s) 818, 871
EcoRII CCWGG 3 cut(s) 137, 496, 506
EcoT14I CCWWGG 1 cut(s) 430
EcoT38I GRGCYC 1 cut(s) 388
ErhI CCWWGG 1 cut(s) 430
FaeI CATG 1 cut(s) 260
FaiI YATR 8 cut(s) 209, 213, 258, 438, 443, 448, 658, 895
FaqI GGGAC 1 cut(s) 614
FatI CATG 1 cut(s) 256
FauI CCCGC 1 cut(s) 18
FblI GTMKAC 2 cut(s) 657, 812
Fnu4HI GCNGC 4 cut(s) 37, 128, 262, 412
FokI GGATG 1 cut(s) 430
FriOI GRGCYC 1 cut(s) 388
Fsp4HI GCNGC 4 cut(s) 37, 128, 262, 412
FspBI CTAG 1 cut(s) 881
FspI TGCGCA 1 cut(s) 672
GlaI GCGC 2 cut(s) 35, 672
GluI GCNGC 4 cut(s) 37, 128, 262, 412
GsaI CCCAGC 1 cut(s) 268
HaeIII GGCC 5 cut(s) 251, 386, 406, 428, 838
HapII CCGG 4 cut(s) 55, 167, 520, 816
HgaI GACGC 1 cut(s) 40
HhaI GCGC 2 cut(s) 36, 673
Hin1II CATG 1 cut(s) 260
Hin6I GCGC 2 cut(s) 34, 671
HinP1I GCGC 2 cut(s) 34, 671
HincII GTYRAC 1 cut(s) 813
HindII GTYRAC 1 cut(s) 813
HinfI GANTC 8 cut(s) 179, 217, 493, 511, 558, 608, 632, 758
HpaII CCGG 4 cut(s) 55, 167, 520, 816
HphI GGTGA 2 cut(s) 40, 865
Hpy166II GTNNAC 2 cut(s) 658, 813
Hpy188I TCNGA 1 cut(s) 557
Hpy188III TCNNGA 3 cut(s) 110, 469, 515
Hpy8I GTNNAC 2 cut(s) 658, 813
HpyAV CCTTC 7 cut(s) 364, 539, 655, 736, 789, 837, 895
HpyCH4V TGCA 7 cut(s) 4, 79, 127, 225, 256, 277, 803
HpyF10VI GCNNNNNNNGC 5 cut(s) 31, 133, 420, 761, 890
HpyF3I CTNAG 1 cut(s) 828
Hsp92II CATG 1 cut(s) 260
HspAI GCGC 2 cut(s) 34, 671
Kzo9I GATC 2 cut(s) 6, 10
Lsp1109I GCAGC 4 cut(s) 48, 139, 248, 423
LweI GCATC 1 cut(s) 812
MaeI CTAG 1 cut(s) 881
MaeIII GTNAC 4 cut(s) 28, 214, 818, 871
MalI GATC 2 cut(s) 8, 12
MboI GATC 2 cut(s) 6, 10
MboII GAAGA 2 cut(s) 56, 155
MfeI CAATTG 1 cut(s) 661
MhlI GDGCHC 2 cut(s) 388, 425
MlyI GAGTC 4 cut(s) 211, 502, 602, 767
MnlI CCTC 8 cut(s) 24, 40, 128, 482, 546, 689, 801, 862
MseI TTAA 4 cut(s) 21, 311, 330, 365
MspCI CTTAAG 1 cut(s) 20
MspI CCGG 4 cut(s) 55, 167, 520, 816
MspR9I CCNGG 5 cut(s) 56, 139, 168, 498, 508
MunI CAATTG 1 cut(s) 661
Mva1269I GAATGC 1 cut(s) 632
MvaI CCWGG 3 cut(s) 139, 498, 508
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 5 cut(s) 31, 133, 420, 761, 890
NciI CCSGG 2 cut(s) 56, 168
NdeII GATC 2 cut(s) 6, 10
NheI GCTAGC 1 cut(s) 880
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 1 cut(s) 386
NmeAIII GCCGAG 5 cut(s) 404, 432, 814, 864, 869
NmuCI GTSAC 3 cut(s) 28, 214, 871
NsbI TGCGCA 1 cut(s) 672
NspV TTCGAA 2 cut(s) 197, 852
PaqCI CACCTGC 1 cut(s) 141
PctI GAATGC 1 cut(s) 632
PfeI GAWTC 4 cut(s) 179, 511, 558, 632
PfoI TCCNGGA 1 cut(s) 166
PinAI ACCGGT 1 cut(s) 815
PkrI GCNGC 4 cut(s) 38, 129, 263, 413
PleI GAGTC 4 cut(s) 211, 501, 602, 766
PpsI GAGTC 4 cut(s) 211, 501, 602, 766
PshBI ATTAAT 1 cut(s) 311
Psp6I CCWGG 3 cut(s) 137, 496, 506
PspEI GGTNACC 2 cut(s) 818, 871
PspFI CCCAGC 1 cut(s) 264
PspGI CCWGG 3 cut(s) 137, 496, 506
PspN4I GGNNCC 1 cut(s) 386
PspOMI GGGCCC 1 cut(s) 384
PspPI GGNCC 5 cut(s) 384, 385, 404, 427, 450
PstNI CAGNNNCTG 1 cut(s) 133
SalI GTCGAC 1 cut(s) 811
SaqAI TTAA 4 cut(s) 21, 311, 330, 365
SatI GCNGC 4 cut(s) 37, 128, 262, 412
Sau3AI GATC 2 cut(s) 6, 10
Sau96I GGNCC 5 cut(s) 384, 385, 404, 427, 450
SchI GAGTC 4 cut(s) 211, 502, 602, 767
ScrFI CCNGG 5 cut(s) 56, 139, 168, 498, 508
SduI GDGCHC 2 cut(s) 388, 425
SfaNI GCATC 1 cut(s) 812
SfuI TTCGAA 2 cut(s) 197, 852
SinI GGWCC 1 cut(s) 450
SmlI CTYRAG 2 cut(s) 20, 691
SmoI CTYRAG 2 cut(s) 20, 691
SsiI CCGC 4 cut(s) 25, 86, 715, 753
SspI AATATT 1 cut(s) 397
SspMI CTAG 1 cut(s) 881
StyD4I CCNGG 5 cut(s) 54, 137, 166, 496, 506
StyI CCWWGG 1 cut(s) 430
TaqII GACCGA 1 cut(s) 783
TfiI GAWTC 4 cut(s) 179, 511, 558, 632
Tru1I TTAA 4 cut(s) 21, 311, 330, 365
Tru9I TTAA 4 cut(s) 21, 311, 330, 365
TscAI CASTG 3 cut(s) 570, 751, 805
TseFI GTSAC 3 cut(s) 28, 214, 871
TseI GCWGC 4 cut(s) 36, 127, 261, 411
Tsp45I GTSAC 3 cut(s) 28, 214, 871
TspDTI ATGAA 1 cut(s) 558
TspRI CASTG 3 cut(s) 570, 751, 805
Vha464I CTTAAG 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 450
VspI ATTAAT 1 cut(s) 311
XapI RAATTY 2 cut(s) 93, 551
XmiI GTMKAC 2 cut(s) 657, 812
XspI CTAG 1 cut(s) 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.