pycom13g27530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000158
Physical Location & Seq
Forward (+)
23749873 .. 23751165
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g27530.6

Sequence Viewer

Length: 876 bp
ATGTGGGATCTAACAATCCACCCCCTAGGGGCCCGACGTCCTCGTCGGCACACTTCCGCCCAGGGATTGGCTCTGATACCAAATTGTCACATCCCAGCCCGAACCCCCACCACATGCCGGGCTCGACTCCGCCGTAGCACGATATTGTCCGTTTTGGGCCCCGACCACGCTCTCAGGGTTATGTTTTTGGGAATTCATGCGACCTCGTACTTGCTTAACTTCGGAATTCCTACGGAACCCGAAGCCAGTGAGCTCCCAAAAGGCTTCGTGCTAGGTAGAGATGAGAATATACATATAAGGCATAGAGAATCCACTCCCTTGGACGATAACGATTTTAGCCTAACTTTTTGGGTAACTTTTTTGAAATTAAAATTTATTAAAAGGAAATCATACAAATACATAGTAGATTTAGTTTTGGACTATAAATCTTTTTTTGTTATTAAATTTAATCTCATTAATCATAACTGTGACAATTTGGTATCAAAGCCAAACCCTGGTCGCGTGTGTGCCGAAGAGGACGTCGGGCCCCTAAGAGGGCACAAGGCTTTTTGGAAACTCACTGGCTTCGGGTTCCATCGGAACTCCGAAGTTAAGCGAGTAGCGCTCGAAAGTATTCCCATGATGGGTGACCCACTGGGAAGTTCTTGTGTGAGTTCCCAGAAACAAAACCGTGAAGGTCTGCTGGGGCTCAAAGCAGACAATATCGTGCTACGATGGAATTTGGCCCGGGAAGTGGTTCCGCCTGGGCCAGGATGTGACAGTCAAACTAAGATTTTAAAGGATTTTAAAATTTGTAGATTTTGGTGGAGTGTGGTGGATTTTCATATAATTTTTTTATTGAAAAAAAAAATGGAAAAATCTTTCCCCTTGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

292

Amino Acids

33.26

Weight (kDa)

9.75

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 42
AatII GACGTC 2 cut(s) 40, 522
AccB7I CCANNNNNTGG 2 cut(s) 67, 494
AccII CGCG 1 cut(s) 501
AciI CCGC 3 cut(s) 57, 130, 740
AclWI GGATC 1 cut(s) 15
AcsI RAATTY 6 cut(s) 192, 225, 371, 443, 718, 789
AcyI GRCGYC 2 cut(s) 37, 519
AfaI GTAC 1 cut(s) 209
AfeI AGCGCT 1 cut(s) 603
AfiI CCNNNNNNNGG 9 cut(s) 28, 67, 117, 494, 533, 534, 623, 733, 749
AgsI TTSAA 2 cut(s) 364, 841
AjnI CCWGG 4 cut(s) 60, 493, 742, 748
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
Alw21I GWGCWC 1 cut(s) 255
AlwI GGATC 1 cut(s) 15
Ama87I CYCGRG 1 cut(s) 726
Aor51HI AGCGCT 1 cut(s) 603
AoxI GGCC 5 cut(s) 30, 157, 524, 723, 746
ApaI GGGCCC 3 cut(s) 34, 161, 528
ApoI RAATTY 6 cut(s) 192, 225, 371, 443, 718, 789
ArsI GACNNNNNNTTYG 2 cut(s) 504, 536
AseI ATTAAT 1 cut(s) 456
Asp700I GAANNNNTTC 2 cut(s) 612, 735
AspA2I CCTAGG 1 cut(s) 25
AspLEI GCGC 1 cut(s) 604
AspS9I GGNCC 8 cut(s) 30, 31, 157, 158, 524, 525, 724, 746
AsuC2I CCSGG 3 cut(s) 119, 727, 728
AsuHPI GGTGA 1 cut(s) 638
AvaI CYCGRG 1 cut(s) 726
AvrII CCTAGG 1 cut(s) 25
BaeGI GKGCMC 4 cut(s) 34, 161, 528, 540
BanII GRGCYC 6 cut(s) 34, 124, 161, 255, 528, 690
Bbv12I GWGCWC 1 cut(s) 255
BccI CCATC 3 cut(s) 582, 616, 708
BceAI ACGGC 1 cut(s) 117
BciT130I CCWGG 4 cut(s) 62, 495, 744, 750
BcnI CCSGG 3 cut(s) 119, 727, 728
BfaI CTAG 2 cut(s) 26, 272
BfoI RGCGCY 1 cut(s) 605
BlnI CCTAGG 1 cut(s) 25
Bme1390I CCNGG 7 cut(s) 62, 119, 495, 727, 728, 744, 750
BmeT110I CYCGRG 1 cut(s) 726
BmgT120I GGNCC 8 cut(s) 30, 31, 157, 158, 524, 525, 724, 746
BmiI GGNNCC 9 cut(s) 31, 32, 159, 160, 237, 526, 527, 572, 738
BmrFI CCNGG 7 cut(s) 62, 119, 495, 727, 728, 744, 750
BmrI ACTGGG 1 cut(s) 644
BmuI ACTGGG 1 cut(s) 644
BplI GAGNNNNNCTC 2 cut(s) 588, 620
BpuMI CCSGG 3 cut(s) 119, 727, 728
BsaHI GRCGYC 2 cut(s) 37, 519
BsaJI CCNNGG 7 cut(s) 25, 60, 61, 318, 493, 726, 743
Bsc4I CCNNNNNNNGG 9 cut(s) 28, 67, 117, 494, 533, 534, 623, 733, 749
Bse1I ACTGG 3 cut(s) 246, 565, 639
BseBI CCWGG 4 cut(s) 62, 495, 744, 750
BseDI CCNNGG 7 cut(s) 25, 60, 61, 318, 493, 726, 743
BseGI GGATG 2 cut(s) 90, 758
BseLI CCNNNNNNNGG 9 cut(s) 28, 67, 117, 494, 533, 534, 623, 733, 749
BseMII CTCAG 1 cut(s) 187
BseNI ACTGG 3 cut(s) 246, 565, 639
BseSI GKGCMC 4 cut(s) 34, 161, 528, 540
BseYI CCCAGC 2 cut(s) 94, 682
Bsh1236I CGCG 1 cut(s) 501
BshFI GGCC 5 cut(s) 32, 159, 526, 725, 748
BsiHKAI GWGCWC 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 726
BsiSI CCGG 2 cut(s) 118, 727
BslI CCNNNNNNNGG 9 cut(s) 28, 67, 117, 494, 533, 534, 623, 733, 749
BsnI GGCC 5 cut(s) 32, 159, 526, 725, 748
BsoBI CYCGRG 1 cut(s) 726
Bsp120I GGGCCC 3 cut(s) 30, 157, 524
Bsp1286I GDGCHC 7 cut(s) 34, 124, 161, 255, 528, 540, 690
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 3 cut(s) 57, 130, 740
BspANI GGCC 5 cut(s) 32, 159, 526, 725, 748
BspCNI CTCAG 1 cut(s) 186
BspFNI CGCG 1 cut(s) 501
BspLI GGNNCC 9 cut(s) 31, 32, 159, 160, 237, 526, 527, 572, 738
BspPI GGATC 1 cut(s) 15
BsrI ACTGG 3 cut(s) 246, 565, 639
BssECI CCNNGG 7 cut(s) 25, 60, 61, 318, 493, 726, 743
BssMI GATC 1 cut(s) 7
BssNI GRCGYC 2 cut(s) 37, 519
BssT1I CCWWGG 2 cut(s) 25, 318
Bst2UI CCWGG 4 cut(s) 62, 495, 744, 750
Bst4CI ACNGT 3 cut(s) 467, 671, 761
Bst6I CTCTTC 1 cut(s) 507
BstACI GRCGYC 2 cut(s) 37, 519
BstDEI CTNAG 3 cut(s) 173, 530, 768
BstEII GGTNACC 1 cut(s) 626
BstENI CCTNNNNNAGG 1 cut(s) 747
BstF5I GGATG 2 cut(s) 90, 758
BstFNI CGCG 1 cut(s) 501
BstH2I RGCGCY 1 cut(s) 605
BstHHI GCGC 1 cut(s) 604
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstMWI GCNNNNNNNGC 1 cut(s) 601
BstNI CCWGG 4 cut(s) 62, 495, 744, 750
BstNSI RCATGY 1 cut(s) 117
BstPI GGTNACC 1 cut(s) 626
BstSCI CCNGG 7 cut(s) 60, 117, 493, 725, 726, 742, 748
BstSLI GKGCMC 4 cut(s) 34, 161, 528, 540
BstUI CGCG 1 cut(s) 501
BstX2I RGATCY 1 cut(s) 7
BstXI CCANNNNNNTGG 1 cut(s) 319
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 5 cut(s) 32, 159, 526, 725, 748
BtsCI GGATG 2 cut(s) 90, 758
BtsIMutI CAGTG 3 cut(s) 253, 558, 632
CfoI GCGC 1 cut(s) 604
Cfr13I GGNCC 8 cut(s) 30, 31, 157, 158, 524, 525, 724, 746
Cfr9I CCCGGG 1 cut(s) 726
Csp6I GTAC 1 cut(s) 208
CviAII CATG 3 cut(s) 114, 197, 619
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 3 cut(s) 173, 530, 768
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
DraI TTTAAA 2 cut(s) 777, 787
DrdI GACNNNNNNGTC 1 cut(s) 42
DseDI GACNNNNNNGTC 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
EciI GGCGGA 3 cut(s) 46, 119, 729
Ecl136II GAGCTC 1 cut(s) 253
Eco130I CCWWGG 2 cut(s) 25, 318
Eco24I GRGCYC 6 cut(s) 34, 124, 161, 255, 528, 690
Eco47III AGCGCT 1 cut(s) 603
Eco53kI GAGCTC 1 cut(s) 253
Eco88I CYCGRG 1 cut(s) 726
Eco91I GGTNACC 1 cut(s) 626
EcoICRI GAGCTC 1 cut(s) 253
EcoNI CCTNNNNNAGG 1 cut(s) 747
EcoO109I RGGNCCY 3 cut(s) 30, 158, 525
EcoO65I GGTNACC 1 cut(s) 626
EcoRI GAATTC 2 cut(s) 192, 225
EcoRII CCWGG 4 cut(s) 60, 493, 742, 748
EcoT14I CCWWGG 2 cut(s) 25, 318
EcoT38I GRGCYC 6 cut(s) 34, 124, 161, 255, 528, 690
ErhI CCWWGG 2 cut(s) 25, 318
FaeI CATG 3 cut(s) 117, 200, 622
FatI CATG 3 cut(s) 113, 196, 618
FokI GGATG 2 cut(s) 77, 765
FriOI GRGCYC 6 cut(s) 34, 124, 161, 255, 528, 690
FspBI CTAG 2 cut(s) 26, 272
GlaI GCGC 1 cut(s) 603
GsaI CCCAGC 2 cut(s) 98, 686
HaeII RGCGCY 1 cut(s) 605
HaeIII GGCC 5 cut(s) 32, 159, 526, 725, 748
HapII CCGG 2 cut(s) 118, 727
HhaI GCGC 1 cut(s) 604
Hin1I GRCGYC 2 cut(s) 37, 519
Hin1II CATG 3 cut(s) 117, 200, 622
Hin6I GCGC 1 cut(s) 602
HinP1I GCGC 1 cut(s) 602
HinfI GANTC 2 cut(s) 126, 308
HpaII CCGG 2 cut(s) 118, 727
HphI GGTGA 1 cut(s) 638
Hpy188I TCNGA 4 cut(s) 75, 224, 579, 586
Hpy99I CGWCG 3 cut(s) 39, 48, 524
HpyAV CCTTC 1 cut(s) 668
HpyCH4III ACNGT 3 cut(s) 467, 671, 761
HpyCH4IV ACGT 2 cut(s) 37, 519
HpyF10VI GCNNNNNNNGC 1 cut(s) 601
HpyF3I CTNAG 3 cut(s) 173, 530, 768
HpySE526I ACGT 2 cut(s) 37, 519
Hsp92I GRCGYC 2 cut(s) 37, 519
Hsp92II CATG 3 cut(s) 117, 200, 622
HspAI GCGC 1 cut(s) 602
Kzo9I GATC 1 cut(s) 7
LmnI GCTCC 1 cut(s) 258
MaeI CTAG 2 cut(s) 26, 272
MaeII ACGT 2 cut(s) 37, 519
MaeIII GTNAC 5 cut(s) 86, 352, 467, 626, 755
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 1 cut(s) 524
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 7 cut(s) 34, 124, 161, 255, 528, 540, 690
MlyI GAGTC 1 cut(s) 120
MnlI CCTC 4 cut(s) 51, 214, 508, 527
MroXI GAANNNNTTC 2 cut(s) 612, 735
MseI TTAA 9 cut(s) 216, 368, 378, 441, 447, 456, 591, 776, 786
MslI CAYNNNNRTG 1 cut(s) 465
MspI CCGG 2 cut(s) 118, 727
MspR9I CCNGG 7 cut(s) 62, 119, 495, 727, 728, 744, 750
MvaI CCWGG 4 cut(s) 62, 495, 744, 750
MvnI CGCG 1 cut(s) 501
MwoI GCNNNNNNNGC 1 cut(s) 601
NciI CCSGG 3 cut(s) 119, 727, 728
NdeII GATC 1 cut(s) 7
NlaIII CATG 3 cut(s) 117, 200, 622
NlaIV GGNNCC 9 cut(s) 31, 32, 159, 160, 237, 526, 527, 572, 738
NmuCI GTSAC 4 cut(s) 86, 467, 626, 755
NspI RCATGY 1 cut(s) 117
PasI CCCWGGG 1 cut(s) 61
PcsI WCGNNNNNNNCGW 1 cut(s) 130
PdmI GAANNNNTTC 2 cut(s) 612, 735
PfeI GAWTC 1 cut(s) 308
PflMI CCANNNNNTGG 2 cut(s) 67, 494
PleI GAGTC 1 cut(s) 120
PpsI GAGTC 1 cut(s) 120
PshBI ATTAAT 1 cut(s) 456
Psp124BI GAGCTC 1 cut(s) 255
Psp6I CCWGG 4 cut(s) 60, 493, 742, 748
PspEI GGTNACC 1 cut(s) 626
PspFI CCCAGC 2 cut(s) 94, 682
PspGI CCWGG 4 cut(s) 60, 493, 742, 748
PspN4I GGNNCC 9 cut(s) 31, 32, 159, 160, 237, 526, 527, 572, 738
PspOMI GGGCCC 3 cut(s) 30, 157, 524
PspPI GGNCC 8 cut(s) 30, 31, 157, 158, 524, 525, 724, 746
PsuI RGATCY 1 cut(s) 7
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 465
SacI GAGCTC 1 cut(s) 255
SaqAI TTAA 9 cut(s) 216, 368, 378, 441, 447, 456, 591, 776, 786
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 8 cut(s) 30, 31, 157, 158, 524, 525, 724, 746
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 7 cut(s) 62, 119, 495, 727, 728, 744, 750
SduI GDGCHC 7 cut(s) 34, 124, 161, 255, 528, 540, 690
SetI ASST 7 cut(s) 40, 206, 255, 277, 522, 679, 875
SmaI CCCGGG 1 cut(s) 728
SmiMI CAYNNNNRTG 1 cut(s) 465
SsiI CCGC 3 cut(s) 57, 130, 740
SspMI CTAG 2 cut(s) 26, 272
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 7 cut(s) 60, 117, 493, 725, 726, 742, 748
StyI CCWWGG 2 cut(s) 25, 318
TaaI ACNGT 3 cut(s) 467, 671, 761
TaiI ACGT 2 cut(s) 40, 522
TaqI TCGA 2 cut(s) 124, 606
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 9 cut(s) 216, 368, 378, 441, 447, 456, 591, 776, 786
Tru9I TTAA 9 cut(s) 216, 368, 378, 441, 447, 456, 591, 776, 786
TscAI CASTG 3 cut(s) 253, 565, 639
TseFI GTSAC 4 cut(s) 86, 467, 626, 755
Tsp45I GTSAC 4 cut(s) 86, 467, 626, 755
TspDTI ATGAA 2 cut(s) 185, 812
TspGWI ACGGA 2 cut(s) 139, 248
TspMI CCCGGG 1 cut(s) 726
TspRI CASTG 3 cut(s) 253, 565, 639
Van91I CCANNNNNTGG 2 cut(s) 67, 494
VspI ATTAAT 1 cut(s) 456
XagI CCTNNNNNAGG 1 cut(s) 747
XapI RAATTY 6 cut(s) 192, 225, 371, 443, 718, 789
XceI RCATGY 1 cut(s) 117
XmaI CCCGGG 1 cut(s) 726
XmaJI CCTAGG 1 cut(s) 25
XmnI GAANNNNTTC 2 cut(s) 612, 735
XspI CTAG 2 cut(s) 26, 272
ZraI GACGTC 2 cut(s) 38, 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.