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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 327, 716 |
| AccBSI | CCGCTC | 1 cut(s) | 1168 |
| AccI | GTMKAC | 1 cut(s) | 929 |
| AciI | CCGC | 1 cut(s) | 1166 |
| AclWI | GGATC | 3 cut(s) | 823, 1158, 1388 |
| AcsI | RAATTY | 8 cut(s) | 65, 227, 382, 427, 985, 1034, 1400, 1426 |
| AfaI | GTAC | 2 cut(s) | 897, 1009 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 284, 1143 |
| AgsI | TTSAA | 7 cut(s) | 341, 463, 472, 504, 613, 1034, 1089 |
| AjnI | CCWGG | 1 cut(s) | 1389 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 65, 97 |
| Alw26I | GTCTC | 1 cut(s) | 1483 |
| AlwI | GGATC | 3 cut(s) | 823, 1158, 1388 |
| Ama87I | CYCGRG | 2 cut(s) | 1142, 1159 |
| AoxI | GGCC | 3 cut(s) | 1139, 1162, 1342 |
| ApaI | GGGCCC | 1 cut(s) | 1166 |
| ApeKI | GCWGC | 1 cut(s) | 202 |
| ApoI | RAATTY | 8 cut(s) | 65, 227, 382, 427, 985, 1034, 1400, 1426 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 977, 1009, 1469, 1501 |
| AseI | ATTAAT | 1 cut(s) | 708 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 467 |
| AspS9I | GGNCC | 5 cut(s) | 17, 874, 1140, 1162, 1163 |
| AsuC2I | CCSGG | 6 cut(s) | 21, 1138, 1143, 1144, 1160, 1161 |
| AsuHPI | GGTGA | 1 cut(s) | 424 |
| AvaI | CYCGRG | 2 cut(s) | 1142, 1159 |
| AvaII | GGWCC | 2 cut(s) | 17, 874 |
| BaeGI | GKGCMC | 1 cut(s) | 1166 |
| BanII | GRGCYC | 1 cut(s) | 1166 |
| BauI | CACGAG | 2 cut(s) | 1239, 1346 |
| BbvI | GCAGC | 1 cut(s) | 189 |
| BccI | CCATC | 3 cut(s) | 905, 1141, 1182 |
| BciT130I | CCWGG | 1 cut(s) | 1391 |
| BcnI | CCSGG | 6 cut(s) | 21, 1138, 1143, 1144, 1160, 1161 |
| BcoDI | GTCTC | 1 cut(s) | 1483 |
| BfaI | CTAG | 5 cut(s) | 245, 1118, 1280, 1352, 1493 |
| BfmI | CTRYAG | 2 cut(s) | 138, 930 |
| BisI | GCNGC | 1 cut(s) | 203 |
| BlsI | GCNGC | 1 cut(s) | 204 |
| Bme1390I | CCNGG | 7 cut(s) | 21, 1138, 1143, 1144, 1160, 1161, 1391 |
| Bme18I | GGWCC | 2 cut(s) | 17, 874 |
| BmeT110I | CYCGRG | 2 cut(s) | 1142, 1159 |
| BmgT120I | GGNCC | 5 cut(s) | 17, 874, 1140, 1162, 1163 |
| BmiI | GGNNCC | 2 cut(s) | 1164, 1317 |
| BmrFI | CCNGG | 7 cut(s) | 21, 1138, 1143, 1144, 1160, 1161, 1391 |
| BmrI | ACTGGG | 1 cut(s) | 1246 |
| BmsI | GCATC | 1 cut(s) | 273 |
| BmuI | ACTGGG | 1 cut(s) | 1246 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1049 |
| BpmI | CTGGAG | 1 cut(s) | 1060 |
| BpuEI | CTTGAG | 3 cut(s) | 514, 854, 1022 |
| BpuMI | CCSGG | 6 cut(s) | 21, 1138, 1143, 1144, 1160, 1161 |
| Bsa29I | ATCGAT | 1 cut(s) | 6 |
| BsaJI | CCNNGG | 5 cut(s) | 20, 1142, 1159, 1389, 1390 |
| BsaWI | WCCGGW | 1 cut(s) | 152 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 284, 1143 |
| Bse118I | RCCGGY | 1 cut(s) | 871 |
| Bse1I | ACTGG | 2 cut(s) | 1252, 1326 |
| BseBI | CCWGG | 1 cut(s) | 1391 |
| BseCI | ATCGAT | 1 cut(s) | 6 |
| BseDI | CCNNGG | 5 cut(s) | 20, 1142, 1159, 1389, 1390 |
| BseGI | GGATG | 5 cut(s) | 231, 264, 1133, 1152, 1366 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 284, 1143 |
| BseNI | ACTGG | 2 cut(s) | 1252, 1326 |
| BseSI | GKGCMC | 1 cut(s) | 1166 |
| BseXI | GCAGC | 1 cut(s) | 189 |
| BsgI | GTGCAG | 1 cut(s) | 188 |
| Bsh1285I | CGRYCG | 1 cut(s) | 10 |
| BshFI | GGCC | 3 cut(s) | 1141, 1164, 1344 |
| BshVI | ATCGAT | 1 cut(s) | 6 |
| BsiEI | CGRYCG | 1 cut(s) | 10 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1142, 1159 |
| BsiSI | CCGG | 6 cut(s) | 20, 153, 872, 1138, 1143, 1160 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 284, 1143 |
| BsmAI | GTCTC | 1 cut(s) | 1483 |
| BsnI | GGCC | 3 cut(s) | 1141, 1164, 1344 |
| BsoBI | CYCGRG | 2 cut(s) | 1142, 1159 |
| Bsp120I | GGGCCC | 1 cut(s) | 1162 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1166 |
| Bsp143I | GATC | 5 cut(s) | 3, 7, 828, 1150, 1380 |
| BspACI | CCGC | 1 cut(s) | 1166 |
| BspANI | GGCC | 3 cut(s) | 1141, 1164, 1344 |
| BspDI | ATCGAT | 1 cut(s) | 6 |
| BspLI | GGNNCC | 2 cut(s) | 1164, 1317 |
| BspPI | GGATC | 3 cut(s) | 823, 1158, 1388 |
| BsrBI | CCGCTC | 1 cut(s) | 1168 |
| BsrFI | RCCGGY | 1 cut(s) | 871 |
| BsrI | ACTGG | 2 cut(s) | 1252, 1326 |
| BssAI | RCCGGY | 1 cut(s) | 871 |
| BssECI | CCNNGG | 5 cut(s) | 20, 1142, 1159, 1389, 1390 |
| BssMI | GATC | 5 cut(s) | 3, 7, 828, 1150, 1380 |
| BssSI | CACGAG | 2 cut(s) | 1239, 1346 |
| Bst2BI | CACGAG | 2 cut(s) | 1239, 1346 |
| Bst2UI | CCWGG | 1 cut(s) | 1391 |
| Bst4CI | ACNGT | 4 cut(s) | 109, 522, 625, 1220 |
| BstC8I | GCNNGC | 2 cut(s) | 1076, 1166 |
| BstDEI | CTNAG | 2 cut(s) | 574, 974 |
| BstF5I | GGATG | 5 cut(s) | 231, 264, 1133, 1152, 1366 |
| BstKTI | GATC | 5 cut(s) | 6, 10, 831, 1153, 1383 |
| BstMAI | GTCTC | 1 cut(s) | 1483 |
| BstMBI | GATC | 5 cut(s) | 3, 7, 828, 1150, 1380 |
| BstMCI | CGRYCG | 1 cut(s) | 10 |
| BstNI | CCWGG | 1 cut(s) | 1391 |
| BstNSI | RCATGY | 2 cut(s) | 572, 660 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1049 |
| BstSCI | CCNGG | 7 cut(s) | 19, 1136, 1141, 1142, 1158, 1159, 1389 |
| BstSFI | CTRYAG | 2 cut(s) | 138, 930 |
| BstSLI | GKGCMC | 1 cut(s) | 1166 |
| BstV1I | GCAGC | 1 cut(s) | 189 |
| Bsu15I | ATCGAT | 1 cut(s) | 6 |
| BsuRI | GGCC | 3 cut(s) | 1141, 1164, 1344 |
| BsuTUI | ATCGAT | 1 cut(s) | 6 |
| BtsCI | GGATG | 5 cut(s) | 231, 264, 1133, 1152, 1366 |
| BtsIMutI | CAGTG | 2 cut(s) | 1259, 1333 |
| Cac8I | GCNNGC | 2 cut(s) | 1076, 1166 |
| Cfr10I | RCCGGY | 1 cut(s) | 871 |
| Cfr13I | GGNCC | 5 cut(s) | 17, 874, 1140, 1162, 1163 |
| Cfr9I | CCCGGG | 2 cut(s) | 1142, 1159 |
| ClaI | ATCGAT | 1 cut(s) | 6 |
| CseI | GACGC | 1 cut(s) | 78 |
| Csp6I | GTAC | 2 cut(s) | 896, 1008 |
| CviAII | CATG | 7 cut(s) | 46, 132, 569, 657, 1127, 1183, 1268 |
| CviQI | GTAC | 2 cut(s) | 896, 1008 |
| DdeI | CTNAG | 2 cut(s) | 574, 974 |
| DpnI | GATC | 5 cut(s) | 5, 9, 830, 1152, 1382 |
| DpnII | GATC | 5 cut(s) | 3, 7, 828, 1150, 1380 |
| Eco147I | AGGCCT | 1 cut(s) | 1344 |
| Eco24I | GRGCYC | 1 cut(s) | 1166 |
| Eco47I | GGWCC | 2 cut(s) | 17, 874 |
| Eco88I | CYCGRG | 2 cut(s) | 1142, 1159 |
| EcoRI | GAATTC | 2 cut(s) | 1034, 1426 |
| EcoRII | CCWGG | 1 cut(s) | 1389 |
| EcoT22I | ATGCAT | 2 cut(s) | 173, 570 |
| EcoT38I | GRGCYC | 1 cut(s) | 1166 |
| FaeI | CATG | 7 cut(s) | 49, 135, 572, 660, 1130, 1186, 1271 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 320, 352 |
| FatI | CATG | 7 cut(s) | 45, 131, 568, 656, 1126, 1182, 1267 |
| FauI | CCCGC | 1 cut(s) | 1173 |
| FauNDI | CATATG | 1 cut(s) | 173 |
| FblI | GTMKAC | 1 cut(s) | 929 |
| Fnu4HI | GCNGC | 1 cut(s) | 203 |
| FokI | GGATG | 5 cut(s) | 218, 251, 1120, 1159, 1373 |
| FriOI | GRGCYC | 1 cut(s) | 1166 |
| Fsp4HI | GCNGC | 1 cut(s) | 203 |
| FspBI | CTAG | 5 cut(s) | 245, 1118, 1280, 1352, 1493 |
| GluI | GCNGC | 1 cut(s) | 203 |
| GsuI | CTGGAG | 1 cut(s) | 1060 |
| HaeIII | GGCC | 3 cut(s) | 1141, 1164, 1344 |
| HapII | CCGG | 6 cut(s) | 20, 153, 872, 1138, 1143, 1160 |
| HgaI | GACGC | 1 cut(s) | 78 |
| Hin1II | CATG | 7 cut(s) | 49, 135, 572, 660, 1130, 1186, 1271 |
| HincII | GTYRAC | 1 cut(s) | 885 |
| HindII | GTYRAC | 1 cut(s) | 885 |
| HinfI | GANTC | 3 cut(s) | 480, 865, 992 |
| HpaI | GTTAAC | 1 cut(s) | 885 |
| HpaII | CCGG | 6 cut(s) | 20, 153, 872, 1138, 1143, 1160 |
| HphI | GGTGA | 1 cut(s) | 424 |
| Hpy166II | GTNNAC | 4 cut(s) | 105, 885, 930, 1331 |
| Hpy188I | TCNGA | 1 cut(s) | 1304 |
| Hpy188III | TCNNGA | 6 cut(s) | 15, 531, 1001, 1039, 1239, 1488 |
| Hpy8I | GTNNAC | 4 cut(s) | 105, 885, 930, 1331 |
| Hpy99I | CGWCG | 1 cut(s) | 94 |
| HpyAV | CCTTC | 2 cut(s) | 279, 1297 |
| HpyCH4III | ACNGT | 4 cut(s) | 109, 522, 625, 1220 |
| HpyCH4IV | ACGT | 1 cut(s) | 1050 |
| HpyF3I | CTNAG | 2 cut(s) | 574, 974 |
| HpySE526I | ACGT | 1 cut(s) | 1050 |
| Hsp92II | CATG | 7 cut(s) | 49, 135, 572, 660, 1130, 1186, 1271 |
| KspAI | GTTAAC | 1 cut(s) | 885 |
| Kzo9I | GATC | 5 cut(s) | 3, 7, 828, 1150, 1380 |
| LmnI | GCTCC | 2 cut(s) | 1173, 1465 |
| Lsp1109I | GCAGC | 1 cut(s) | 189 |
| LweI | GCATC | 1 cut(s) | 273 |
| MaeI | CTAG | 5 cut(s) | 245, 1118, 1280, 1352, 1493 |
| MaeII | ACGT | 1 cut(s) | 1050 |
| MaeIII | GTNAC | 2 cut(s) | 1129, 1258 |
| MalI | GATC | 5 cut(s) | 5, 9, 830, 1152, 1382 |
| MbiI | CCGCTC | 1 cut(s) | 1168 |
| MboI | GATC | 5 cut(s) | 3, 7, 828, 1150, 1380 |
| MboII | GAAGA | 6 cut(s) | 85, 156, 552, 624, 927, 1077 |
| MhlI | GDGCHC | 1 cut(s) | 1166 |
| MlyI | GAGTC | 2 cut(s) | 474, 1001 |
| MmeI | TCCRAC | 2 cut(s) | 754, 1487 |
| Mph1103I | ATGCAT | 2 cut(s) | 173, 570 |
| MroXI | GAANNNNTTC | 1 cut(s) | 467 |
| MslI | CAYNNNNRTG | 1 cut(s) | 906 |
| MspI | CCGG | 6 cut(s) | 20, 153, 872, 1138, 1143, 1160 |
| MspR9I | CCNGG | 7 cut(s) | 21, 1138, 1143, 1144, 1160, 1161, 1391 |
| MvaI | CCWGG | 1 cut(s) | 1391 |
| NciI | CCSGG | 6 cut(s) | 21, 1138, 1143, 1144, 1160, 1161 |
| NdeI | CATATG | 1 cut(s) | 173 |
| NdeII | GATC | 5 cut(s) | 3, 7, 828, 1150, 1380 |
| NlaIII | CATG | 7 cut(s) | 49, 135, 572, 660, 1130, 1186, 1271 |
| NlaIV | GGNNCC | 2 cut(s) | 1164, 1317 |
| NmuCI | GTSAC | 2 cut(s) | 1129, 1258 |
| NsiI | ATGCAT | 2 cut(s) | 173, 570 |
| NspI | RCATGY | 2 cut(s) | 572, 660 |
| PacI | TTAATTAA | 1 cut(s) | 225 |
| PasI | CCCWGGG | 1 cut(s) | 1390 |
| PceI | AGGCCT | 1 cut(s) | 1344 |
| PdmI | GAANNNNTTC | 1 cut(s) | 467 |
| PfeI | GAWTC | 1 cut(s) | 865 |
| PkrI | GCNGC | 1 cut(s) | 204 |
| Ple19I | CGATCG | 1 cut(s) | 10 |
| PleI | GAGTC | 2 cut(s) | 474, 1000 |
| PpsI | GAGTC | 2 cut(s) | 474, 1000 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1049 |
| PshBI | ATTAAT | 1 cut(s) | 708 |
| PsiI | TTATAA | 2 cut(s) | 327, 716 |
| Psp6I | CCWGG | 1 cut(s) | 1389 |
| PspGI | CCWGG | 1 cut(s) | 1389 |
| PspN4I | GGNNCC | 2 cut(s) | 1164, 1317 |
| PspOMI | GGGCCC | 1 cut(s) | 1162 |
| PspPI | GGNCC | 5 cut(s) | 17, 874, 1140, 1162, 1163 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 280, 312 |
| PvuI | CGATCG | 1 cut(s) | 10 |
| RsaI | GTAC | 2 cut(s) | 897, 1009 |
| RsaNI | GTAC | 2 cut(s) | 896, 1008 |
| RseI | CAYNNNNRTG | 1 cut(s) | 906 |
| SatI | GCNGC | 1 cut(s) | 203 |
| Sau3AI | GATC | 5 cut(s) | 3, 7, 828, 1150, 1380 |
| Sau96I | GGNCC | 5 cut(s) | 17, 874, 1140, 1162, 1163 |
| SchI | GAGTC | 2 cut(s) | 474, 1001 |
| ScrFI | CCNGG | 7 cut(s) | 21, 1138, 1143, 1144, 1160, 1161, 1391 |
| SduI | GDGCHC | 1 cut(s) | 1166 |
| SetI | ASST | 5 cut(s) | 794, 827, 901, 1053, 1357 |
| SfaNI | GCATC | 1 cut(s) | 273 |
| SfcI | CTRYAG | 2 cut(s) | 138, 930 |
| SinI | GGWCC | 2 cut(s) | 17, 874 |
| SmaI | CCCGGG | 2 cut(s) | 1144, 1161 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 906 |
| SmlI | CTYRAG | 3 cut(s) | 529, 833, 1001 |
| SmoI | CTYRAG | 3 cut(s) | 529, 833, 1001 |
| SseBI | AGGCCT | 1 cut(s) | 1344 |
| SsiI | CCGC | 1 cut(s) | 1166 |
| SspI | AATATT | 4 cut(s) | 608, 712, 1456, 1516 |
| SspMI | CTAG | 5 cut(s) | 245, 1118, 1280, 1352, 1493 |
| StuI | AGGCCT | 1 cut(s) | 1344 |
| StyD4I | CCNGG | 7 cut(s) | 19, 1136, 1141, 1142, 1158, 1159, 1389 |
| TaaI | ACNGT | 4 cut(s) | 109, 522, 625, 1220 |
| TaiI | ACGT | 1 cut(s) | 1053 |
| TaqI | TCGA | 2 cut(s) | 6, 1487 |
| TfiI | GAWTC | 1 cut(s) | 865 |
| TscAI | CASTG | 2 cut(s) | 1259, 1333 |
| TseFI | GTSAC | 2 cut(s) | 1129, 1258 |
| TseI | GCWGC | 1 cut(s) | 202 |
| Tsp45I | GTSAC | 2 cut(s) | 1129, 1258 |
| TspGWI | ACGGA | 3 cut(s) | 1025, 1183, 1328 |
| TspMI | CCCGGG | 2 cut(s) | 1142, 1159 |
| TspRI | CASTG | 2 cut(s) | 1259, 1333 |
| VpaK11BI | GGWCC | 2 cut(s) | 17, 874 |
| VspI | ATTAAT | 1 cut(s) | 708 |
| XapI | RAATTY | 8 cut(s) | 65, 227, 382, 427, 985, 1034, 1400, 1426 |
| XceI | RCATGY | 2 cut(s) | 572, 660 |
| XmaI | CCCGGG | 2 cut(s) | 1142, 1159 |
| XmiI | GTMKAC | 1 cut(s) | 929 |
| XmnI | GAANNNNTTC | 1 cut(s) | 467 |
| XspI | CTAG | 5 cut(s) | 245, 1118, 1280, 1352, 1493 |
| Zsp2I | ATGCAT | 2 cut(s) | 173, 570 |