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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 65, 978 |
| Acc36I | ACCTGC | 1 cut(s) | 619 |
| Acc65I | GGTACC | 1 cut(s) | 468 |
| AccB1I | GGYRCC | 1 cut(s) | 468 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 677, 1211 |
| AccII | CGCG | 4 cut(s) | 117, 232, 1081, 1083 |
| AciI | CCGC | 5 cut(s) | 309, 933, 955, 1001, 1442 |
| AclWI | GGATC | 4 cut(s) | 319, 1010, 1023, 1302 |
| AcsI | RAATTY | 7 cut(s) | 199, 319, 581, 927, 1537, 1786, 2011 |
| AdeI | CACNNNGTG | 1 cut(s) | 1725 |
| AfaI | GTAC | 2 cut(s) | 448, 470 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 242, 677, 1100, 1211, 1228 |
| AjiI | CACGTC | 1 cut(s) | 1652 |
| AjnI | CCWGG | 4 cut(s) | 471, 1204, 1221, 1490 |
| AluBI | AGCT | 6 cut(s) | 329, 625, 728, 1131, 1353, 1773 |
| AluI | AGCT | 6 cut(s) | 329, 625, 728, 1131, 1353, 1773 |
| Alw21I | GWGCWC | 1 cut(s) | 1133 |
| AlwI | GGATC | 4 cut(s) | 319, 1010, 1023, 1302 |
| ApaI | GGGCCC | 2 cut(s) | 1168, 1437 |
| ApoI | RAATTY | 7 cut(s) | 199, 319, 581, 927, 1537, 1786, 2011 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 291 |
| Asp718I | GGTACC | 1 cut(s) | 468 |
| AspA2I | CCTAGG | 1 cut(s) | 1094 |
| AspLEI | GCGC | 3 cut(s) | 119, 924, 1083 |
| AsuC2I | CCSGG | 1 cut(s) | 1229 |
| AsuHPI | GGTGA | 7 cut(s) | 195, 324, 338, 388, 1115, 1272, 1646 |
| AvaII | GGWCC | 3 cut(s) | 260, 521, 801 |
| AvrII | CCTAGG | 1 cut(s) | 1094 |
| BaeGI | GKGCMC | 3 cut(s) | 399, 1168, 1437 |
| BamHI | GGATCC | 1 cut(s) | 1015 |
| BanI | GGYRCC | 1 cut(s) | 468 |
| BanII | GRGCYC | 4 cut(s) | 1133, 1168, 1205, 1437 |
| BauI | CACGAG | 5 cut(s) | 404, 1122, 1336, 1401, 1723 |
| Bbv12I | GWGCWC | 1 cut(s) | 1133 |
| BccI | CCATC | 5 cut(s) | 304, 360, 367, 373, 1051 |
| BciT130I | CCWGG | 4 cut(s) | 473, 1206, 1223, 1492 |
| BcnI | CCSGG | 1 cut(s) | 1229 |
| BfaI | CTAG | 8 cut(s) | 110, 215, 366, 725, 1053, 1095, 1262, 1332 |
| BfuAI | ACCTGC | 1 cut(s) | 619 |
| BlnI | CCTAGG | 1 cut(s) | 1094 |
| Bme1390I | CCNGG | 5 cut(s) | 473, 1206, 1223, 1229, 1492 |
| Bme18I | GGWCC | 3 cut(s) | 260, 521, 801 |
| BmgBI | CACGTC | 1 cut(s) | 1652 |
| BmiI | GGNNCC | 7 cut(s) | 262, 470, 1017, 1166, 1220, 1435, 1489 |
| BmrFI | CCNGG | 5 cut(s) | 473, 1206, 1223, 1229, 1492 |
| BmrI | ACTGGG | 1 cut(s) | 1121 |
| BmsI | GCATC | 1 cut(s) | 172 |
| BmuI | ACTGGG | 1 cut(s) | 1121 |
| BpuEI | CTTGAG | 1 cut(s) | 208 |
| BpuMI | CCSGG | 1 cut(s) | 1229 |
| BsaJI | CCNNGG | 6 cut(s) | 1094, 1204, 1222, 1284, 1473, 1491 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 242, 677, 1100, 1211, 1228 |
| Bse1I | ACTGG | 2 cut(s) | 1116, 1362 |
| BseBI | CCWGG | 4 cut(s) | 473, 1206, 1223, 1492 |
| BseDI | CCNNGG | 6 cut(s) | 1094, 1204, 1222, 1284, 1473, 1491 |
| BseGI | GGATG | 4 cut(s) | 231, 1214, 1237, 1483 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 242, 677, 1100, 1211, 1228 |
| BseNI | ACTGG | 2 cut(s) | 1116, 1362 |
| BseSI | GKGCMC | 3 cut(s) | 399, 1168, 1437 |
| Bsh1236I | CGCG | 4 cut(s) | 117, 232, 1081, 1083 |
| BshNI | GGYRCC | 1 cut(s) | 468 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1133 |
| BsiSI | CCGG | 2 cut(s) | 1228, 1266 |
| BslFI | GGGAC | 2 cut(s) | 246, 1084 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 242, 677, 1100, 1211, 1228 |
| BsmFI | GGGAC | 2 cut(s) | 246, 1084 |
| Bsp120I | GGGCCC | 2 cut(s) | 1164, 1433 |
| Bsp1286I | GDGCHC | 5 cut(s) | 399, 1133, 1168, 1205, 1437 |
| Bsp143I | GATC | 3 cut(s) | 311, 1015, 1294 |
| BspACI | CCGC | 5 cut(s) | 309, 933, 955, 1001, 1442 |
| BspFNI | CGCG | 4 cut(s) | 117, 232, 1081, 1083 |
| BspHI | TCATGA | 1 cut(s) | 1548 |
| BspLI | GGNNCC | 7 cut(s) | 262, 470, 1017, 1166, 1220, 1435, 1489 |
| BspMI | ACCTGC | 1 cut(s) | 619 |
| BspPI | GGATC | 4 cut(s) | 319, 1010, 1023, 1302 |
| BspT107I | GGYRCC | 1 cut(s) | 468 |
| BsrI | ACTGG | 2 cut(s) | 1116, 1362 |
| BssECI | CCNNGG | 6 cut(s) | 1094, 1204, 1222, 1284, 1473, 1491 |
| BssMI | GATC | 3 cut(s) | 311, 1015, 1294 |
| BssSI | CACGAG | 5 cut(s) | 404, 1122, 1336, 1401, 1723 |
| BssT1I | CCWWGG | 3 cut(s) | 1094, 1284, 1473 |
| Bst2BI | CACGAG | 5 cut(s) | 404, 1122, 1336, 1401, 1723 |
| Bst2UI | CCWGG | 4 cut(s) | 473, 1206, 1223, 1492 |
| Bst4CI | ACNGT | 2 cut(s) | 1461, 1658 |
| Bst6I | CTCTTC | 1 cut(s) | 1627 |
| BstC8I | GCNNGC | 1 cut(s) | 511 |
| BstDEI | CTNAG | 2 cut(s) | 706, 1380 |
| BstEII | GGTNACC | 1 cut(s) | 1103 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 240, 1098 |
| BstF5I | GGATG | 4 cut(s) | 231, 1214, 1237, 1483 |
| BstFNI | CGCG | 4 cut(s) | 117, 232, 1081, 1083 |
| BstHHI | GCGC | 3 cut(s) | 119, 924, 1083 |
| BstKTI | GATC | 3 cut(s) | 314, 1018, 1297 |
| BstMBI | GATC | 3 cut(s) | 311, 1015, 1294 |
| BstNI | CCWGG | 4 cut(s) | 473, 1206, 1223, 1492 |
| BstPI | GGTNACC | 1 cut(s) | 1103 |
| BstSCI | CCNGG | 5 cut(s) | 471, 1204, 1221, 1227, 1490 |
| BstSLI | GKGCMC | 3 cut(s) | 399, 1168, 1437 |
| BstUI | CGCG | 4 cut(s) | 117, 232, 1081, 1083 |
| BstX2I | RGATCY | 3 cut(s) | 311, 1015, 1294 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1480 |
| BstYI | RGATCY | 3 cut(s) | 311, 1015, 1294 |
| BtrI | CACGTC | 1 cut(s) | 1652 |
| BtsCI | GGATG | 4 cut(s) | 231, 1214, 1237, 1483 |
| BtsI | GCAGTG | 1 cut(s) | 839 |
| BtsIMutI | CAGTG | 2 cut(s) | 839, 1109 |
| BveI | ACCTGC | 1 cut(s) | 619 |
| Cac8I | GCNNGC | 1 cut(s) | 511 |
| CciI | TCATGA | 1 cut(s) | 1548 |
| CfoI | GCGC | 3 cut(s) | 119, 924, 1083 |
| CseI | GACGC | 2 cut(s) | 238, 784 |
| Csp6I | GTAC | 2 cut(s) | 447, 469 |
| CviAII | CATG | 8 cut(s) | 207, 662, 1057, 1148, 1425, 1498, 1549, 2032 |
| CviQI | GTAC | 2 cut(s) | 447, 469 |
| DdeI | CTNAG | 2 cut(s) | 706, 1380 |
| DpnI | GATC | 3 cut(s) | 313, 1017, 1296 |
| DpnII | GATC | 3 cut(s) | 311, 1015, 1294 |
| DraI | TTTAAA | 2 cut(s) | 988, 1785 |
| DraIII | CACNNNGTG | 1 cut(s) | 1725 |
| Eam1104I | CTCTTC | 1 cut(s) | 1627 |
| EarI | CTCTTC | 1 cut(s) | 1627 |
| EciI | GGCGGA | 1 cut(s) | 970 |
| Ecl136II | GAGCTC | 1 cut(s) | 1131 |
| Eco130I | CCWWGG | 3 cut(s) | 1094, 1284, 1473 |
| Eco147I | AGGCCT | 3 cut(s) | 647, 1063, 1342 |
| Eco24I | GRGCYC | 4 cut(s) | 1133, 1168, 1205, 1437 |
| Eco32I | GATATC | 2 cut(s) | 363, 1181 |
| Eco47I | GGWCC | 3 cut(s) | 260, 521, 801 |
| Eco53kI | GAGCTC | 1 cut(s) | 1131 |
| Eco91I | GGTNACC | 1 cut(s) | 1103 |
| EcoICRI | GAGCTC | 1 cut(s) | 1131 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 240, 1098 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1164, 1219, 1433, 1488 |
| EcoO65I | GGTNACC | 1 cut(s) | 1103 |
| EcoRI | GAATTC | 1 cut(s) | 199 |
| EcoRII | CCWGG | 4 cut(s) | 471, 1204, 1221, 1490 |
| EcoRV | GATATC | 2 cut(s) | 363, 1181 |
| EcoT14I | CCWWGG | 3 cut(s) | 1094, 1284, 1473 |
| EcoT38I | GRGCYC | 4 cut(s) | 1133, 1168, 1205, 1437 |
| ErhI | CCWWGG | 3 cut(s) | 1094, 1284, 1473 |
| FaeI | CATG | 8 cut(s) | 210, 665, 1060, 1151, 1428, 1501, 1552, 2035 |
| FaqI | GGGAC | 2 cut(s) | 246, 1084 |
| FatI | CATG | 8 cut(s) | 206, 661, 1056, 1147, 1424, 1497, 1548, 2031 |
| FauI | CCCGC | 1 cut(s) | 940 |
| FokI | GGATG | 4 cut(s) | 238, 1221, 1244, 1490 |
| FriOI | GRGCYC | 4 cut(s) | 1133, 1168, 1205, 1437 |
| FspBI | CTAG | 8 cut(s) | 110, 215, 366, 725, 1053, 1095, 1262, 1332 |
| GlaI | GCGC | 3 cut(s) | 118, 923, 1082 |
| HapII | CCGG | 2 cut(s) | 1228, 1266 |
| HgaI | GACGC | 2 cut(s) | 238, 784 |
| HhaI | GCGC | 3 cut(s) | 119, 924, 1083 |
| Hin1II | CATG | 8 cut(s) | 210, 665, 1060, 1151, 1428, 1501, 1552, 2035 |
| Hin6I | GCGC | 3 cut(s) | 117, 922, 1081 |
| HinP1I | GCGC | 3 cut(s) | 117, 922, 1081 |
| HincII | GTYRAC | 2 cut(s) | 736, 1917 |
| HindII | GTYRAC | 2 cut(s) | 736, 1917 |
| HinfI | GANTC | 6 cut(s) | 33, 249, 343, 1196, 1465, 1552 |
| HpaI | GTTAAC | 1 cut(s) | 1917 |
| HpaII | CCGG | 2 cut(s) | 1228, 1266 |
| HphI | GGTGA | 7 cut(s) | 195, 324, 338, 388, 1115, 1272, 1646 |
| Hpy166II | GTNNAC | 4 cut(s) | 287, 449, 736, 1917 |
| Hpy188I | TCNGA | 2 cut(s) | 862, 1251 |
| Hpy188III | TCNNGA | 4 cut(s) | 284, 519, 1549, 1982 |
| Hpy8I | GTNNAC | 4 cut(s) | 287, 449, 736, 1917 |
| Hpy99I | CGWCG | 2 cut(s) | 132, 422 |
| HpyAV | CCTTC | 1 cut(s) | 537 |
| HpyCH4III | ACNGT | 2 cut(s) | 1461, 1658 |
| HpyCH4IV | ACGT | 3 cut(s) | 417, 1651, 1884 |
| HpyCH4V | TGCA | 6 cut(s) | 54, 509, 535, 614, 1757, 1977 |
| HpyF3I | CTNAG | 2 cut(s) | 706, 1380 |
| HpySE526I | ACGT | 3 cut(s) | 417, 1651, 1884 |
| Hsp92II | CATG | 8 cut(s) | 210, 665, 1060, 1151, 1428, 1501, 1552, 2035 |
| HspAI | GCGC | 3 cut(s) | 117, 922, 1081 |
| KpnI | GGTACC | 1 cut(s) | 472 |
| KspAI | GTTAAC | 1 cut(s) | 1917 |
| Kzo9I | GATC | 3 cut(s) | 311, 1015, 1294 |
| LmnI | GCTCC | 3 cut(s) | 783, 1136, 1350 |
| LweI | GCATC | 1 cut(s) | 172 |
| MaeI | CTAG | 8 cut(s) | 110, 215, 366, 725, 1053, 1095, 1262, 1332 |
| MaeII | ACGT | 3 cut(s) | 417, 1651, 1884 |
| MaeIII | GTNAC | 5 cut(s) | 772, 1103, 1234, 1652, 1880 |
| MalI | GATC | 3 cut(s) | 313, 1017, 1296 |
| MboI | GATC | 3 cut(s) | 311, 1015, 1294 |
| MflI | RGATCY | 3 cut(s) | 311, 1015, 1294 |
| MhlI | GDGCHC | 5 cut(s) | 399, 1133, 1168, 1205, 1437 |
| MlyI | GAGTC | 3 cut(s) | 1205, 1474, 1561 |
| MmeI | TCCRAC | 2 cut(s) | 840, 1940 |
| MroXI | GAANNNNTTC | 1 cut(s) | 291 |
| MslI | CAYNNNNRTG | 2 cut(s) | 796, 1152 |
| MspI | CCGG | 2 cut(s) | 1228, 1266 |
| MspR9I | CCNGG | 5 cut(s) | 473, 1206, 1223, 1229, 1492 |
| MvaI | CCWGG | 4 cut(s) | 473, 1206, 1223, 1492 |
| MvnI | CGCG | 4 cut(s) | 117, 232, 1081, 1083 |
| NciI | CCSGG | 1 cut(s) | 1229 |
| NdeII | GATC | 3 cut(s) | 311, 1015, 1294 |
| NlaIII | CATG | 8 cut(s) | 210, 665, 1060, 1151, 1428, 1501, 1552, 2035 |
| NlaIV | GGNNCC | 7 cut(s) | 262, 470, 1017, 1166, 1220, 1435, 1489 |
| NmuCI | GTSAC | 4 cut(s) | 772, 1103, 1234, 1652 |
| PagI | TCATGA | 1 cut(s) | 1548 |
| PceI | AGGCCT | 3 cut(s) | 647, 1063, 1342 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 280 |
| PdmI | GAANNNNTTC | 1 cut(s) | 291 |
| PfeI | GAWTC | 3 cut(s) | 33, 249, 343 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 677, 1211 |
| PleI | GAGTC | 3 cut(s) | 1204, 1473, 1560 |
| PpsI | GAGTC | 3 cut(s) | 1204, 1473, 1560 |
| PsiI | TTATAA | 2 cut(s) | 65, 978 |
| Psp124BI | GAGCTC | 1 cut(s) | 1133 |
| Psp6I | CCWGG | 4 cut(s) | 471, 1204, 1221, 1490 |
| PspEI | GGTNACC | 1 cut(s) | 1103 |
| PspGI | CCWGG | 4 cut(s) | 471, 1204, 1221, 1490 |
| PspN4I | GGNNCC | 7 cut(s) | 262, 470, 1017, 1166, 1220, 1435, 1489 |
| PspOMI | GGGCCC | 2 cut(s) | 1164, 1433 |
| PsuI | RGATCY | 3 cut(s) | 311, 1015, 1294 |
| RsaI | GTAC | 2 cut(s) | 448, 470 |
| RsaNI | GTAC | 2 cut(s) | 447, 469 |
| RseI | CAYNNNNRTG | 2 cut(s) | 796, 1152 |
| SacI | GAGCTC | 1 cut(s) | 1133 |
| Sau3AI | GATC | 3 cut(s) | 311, 1015, 1294 |
| SchI | GAGTC | 3 cut(s) | 1205, 1474, 1561 |
| ScrFI | CCNGG | 5 cut(s) | 473, 1206, 1223, 1229, 1492 |
| SduI | GDGCHC | 5 cut(s) | 399, 1133, 1168, 1205, 1437 |
| SfaNI | GCATC | 1 cut(s) | 172 |
| SinI | GGWCC | 3 cut(s) | 260, 521, 801 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 796, 1152 |
| SmlI | CTYRAG | 1 cut(s) | 187 |
| SmoI | CTYRAG | 1 cut(s) | 187 |
| SseBI | AGGCCT | 3 cut(s) | 647, 1063, 1342 |
| SsiI | CCGC | 5 cut(s) | 309, 933, 955, 1001, 1442 |
| SspI | AATATT | 2 cut(s) | 716, 1875 |
| SspMI | CTAG | 8 cut(s) | 110, 215, 366, 725, 1053, 1095, 1262, 1332 |
| SstI | GAGCTC | 1 cut(s) | 1133 |
| StuI | AGGCCT | 3 cut(s) | 647, 1063, 1342 |
| StyD4I | CCNGG | 5 cut(s) | 471, 1204, 1221, 1227, 1490 |
| StyI | CCWWGG | 3 cut(s) | 1094, 1284, 1473 |
| TaaI | ACNGT | 2 cut(s) | 1461, 1658 |
| TaiI | ACGT | 3 cut(s) | 420, 1654, 1887 |
| TaqI | TCGA | 7 cut(s) | 174, 274, 299, 371, 1199, 1364, 1468 |
| TatI | WGTACW | 1 cut(s) | 446 |
| TfiI | GAWTC | 3 cut(s) | 33, 249, 343 |
| TscAI | CASTG | 2 cut(s) | 846, 1116 |
| TseFI | GTSAC | 4 cut(s) | 772, 1103, 1234, 1652 |
| Tsp45I | GTSAC | 4 cut(s) | 772, 1103, 1234, 1652 |
| TspDTI | ATGAA | 9 cut(s) | 17, 129, 678, 680, 1022, 1568, 1591, 1614, 1682 |
| TspGWI | ACGGA | 3 cut(s) | 373, 1307, 1360 |
| TspRI | CASTG | 2 cut(s) | 846, 1116 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 677, 1211 |
| VpaK11BI | GGWCC | 3 cut(s) | 260, 521, 801 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 240, 1098 |
| XapI | RAATTY | 7 cut(s) | 199, 319, 581, 927, 1537, 1786, 2011 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 491 |
| XmaJI | CCTAGG | 1 cut(s) | 1094 |
| XmnI | GAANNNNTTC | 1 cut(s) | 291 |
| XspI | CTAG | 8 cut(s) | 110, 215, 366, 725, 1053, 1095, 1262, 1332 |