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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 350, 2570 |
| AarI | CACCTGC | 1 cut(s) | 2220 |
| Acc36I | ACCTGC | 2 cut(s) | 2220, 2257 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1453 |
| AccBSI | CCGCTC | 2 cut(s) | 1186, 2066 |
| AccI | GTMKAC | 1 cut(s) | 1518 |
| AccII | CGCG | 4 cut(s) | 1321, 1323, 1633, 1635 |
| AclI | AACGTT | 1 cut(s) | 2419 |
| AcoI | YGGCCR | 2 cut(s) | 912, 2486 |
| AcsI | RAATTY | 7 cut(s) | 517, 1668, 1754, 1776, 1888, 1952, 2218 |
| AcvI | CACGTG | 1 cut(s) | 2446 |
| AdeI | CACNNNGTG | 1 cut(s) | 191 |
| AfaI | GTAC | 6 cut(s) | 195, 209, 228, 301, 305, 2078 |
| AflIII | ACRYGT | 2 cut(s) | 1766, 2655 |
| AgsI | TTSAA | 7 cut(s) | 95, 370, 412, 522, 1921, 2111, 2417 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1531 |
| AjiI | CACGTC | 1 cut(s) | 2677 |
| AluBI | AGCT | 6 cut(s) | 387, 741, 996, 1441, 1585, 2114 |
| AluI | AGCT | 6 cut(s) | 387, 741, 996, 1441, 1585, 2114 |
| Alw21I | GWGCWC | 4 cut(s) | 743, 998, 1331, 1587 |
| Ama87I | CYCGRG | 5 cut(s) | 871, 1109, 1126, 1191, 1463 |
| ApaI | GGGCCC | 6 cut(s) | 816, 1071, 1110, 1153, 1192, 1408 |
| ApeKI | GCWGC | 2 cut(s) | 2263, 2276 |
| ApoI | RAATTY | 7 cut(s) | 517, 1668, 1754, 1776, 1888, 1952, 2218 |
| AspA2I | CCTAGG | 2 cut(s) | 2501, 2612 |
| AspLEI | GCGC | 4 cut(s) | 1321, 1323, 1633, 1635 |
| AsuHPI | GGTGA | 5 cut(s) | 391, 669, 924, 1714, 1855 |
| AvaI | CYCGRG | 5 cut(s) | 871, 1109, 1126, 1191, 1463 |
| AvaII | GGWCC | 9 cut(s) | 852, 864, 1119, 1204, 1459, 1533, 1729, 1854, 2640 |
| AvrII | CCTAGG | 2 cut(s) | 2501, 2612 |
| AxyI | CCTNAGG | 1 cut(s) | 1538 |
| BaeGI | GKGCMC | 6 cut(s) | 816, 1071, 1110, 1153, 1192, 1408 |
| BamHI | GGATCC | 3 cut(s) | 2480, 2491, 2622 |
| BanII | GRGCYC | 9 cut(s) | 743, 816, 998, 1071, 1110, 1153, 1192, 1408, 1587 |
| BauI | CACGAG | 3 cut(s) | 724, 979, 1362 |
| BbrPI | CACGTG | 1 cut(s) | 2446 |
| Bbv12I | GWGCWC | 4 cut(s) | 743, 998, 1331, 1587 |
| BbvI | GCAGC | 2 cut(s) | 2275, 2288 |
| BccI | CCATC | 8 cut(s) | 718, 973, 1130, 1333, 1699, 2025, 2275, 2358 |
| BceAI | ACGGC | 1 cut(s) | 899 |
| BciVI | GTATCC | 1 cut(s) | 933 |
| BfaI | CTAG | 7 cut(s) | 609, 720, 975, 1788, 2502, 2511, 2613 |
| BfuAI | ACCTGC | 2 cut(s) | 2220, 2257 |
| BfuI | GTATCC | 1 cut(s) | 933 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1137 |
| BglII | AGATCT | 1 cut(s) | 556 |
| BisI | GCNGC | 3 cut(s) | 1739, 2264, 2277 |
| BlnI | CCTAGG | 2 cut(s) | 2501, 2612 |
| BlsI | GCNGC | 3 cut(s) | 1740, 2265, 2278 |
| BmcAI | AGTACT | 1 cut(s) | 2078 |
| Bme18I | GGWCC | 9 cut(s) | 852, 864, 1119, 1204, 1459, 1533, 1729, 1854, 2640 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1531 |
| BmeT110I | CYCGRG | 5 cut(s) | 871, 1109, 1126, 1191, 1463 |
| BmgBI | CACGTC | 1 cut(s) | 2677 |
| BmrI | ACTGGG | 3 cut(s) | 1361, 1672, 1984 |
| BmsI | GCATC | 2 cut(s) | 2006, 2315 |
| BmuI | ACTGGG | 3 cut(s) | 1361, 1672, 1984 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1484, 1516 |
| BpmI | CTGGAG | 3 cut(s) | 2026, 2152, 2367 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1209 |
| Bsa29I | ATCGAT | 1 cut(s) | 1926 |
| BsaAI | YACGTR | 2 cut(s) | 303, 2446 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2024, 2054 |
| Bse118I | RCCGGY | 1 cut(s) | 2119 |
| Bse1I | ACTGG | 9 cut(s) | 639, 750, 1005, 1356, 1594, 1667, 1990, 2350, 2554 |
| Bse21I | CCTNAGG | 1 cut(s) | 1538 |
| Bse3DI | GCAATG | 1 cut(s) | 1748 |
| BseCI | ATCGAT | 1 cut(s) | 1926 |
| BseMI | GCAATG | 1 cut(s) | 1748 |
| BseNI | ACTGG | 9 cut(s) | 639, 750, 1005, 1356, 1594, 1667, 1990, 2350, 2554 |
| BsePI | GCGCGC | 2 cut(s) | 1319, 1631 |
| BseRI | GAGGAG | 3 cut(s) | 40, 2163, 2166 |
| BseSI | GKGCMC | 6 cut(s) | 816, 1071, 1110, 1153, 1192, 1408 |
| BseXI | GCAGC | 2 cut(s) | 2275, 2288 |
| Bsh1236I | CGCG | 4 cut(s) | 1321, 1323, 1633, 1635 |
| BshVI | ATCGAT | 1 cut(s) | 1926 |
| BsiHKAI | GWGCWC | 4 cut(s) | 743, 998, 1331, 1587 |
| BsiHKCI | CYCGRG | 5 cut(s) | 871, 1109, 1126, 1191, 1463 |
| BslFI | GGGAC | 3 cut(s) | 1519, 1828, 2356 |
| BsmFI | GGGAC | 3 cut(s) | 1519, 1828, 2356 |
| BsoBI | CYCGRG | 5 cut(s) | 871, 1109, 1126, 1191, 1463 |
| Bsp120I | GGGCCC | 6 cut(s) | 812, 1067, 1106, 1149, 1188, 1404 |
| Bsp1407I | TGTACA | 1 cut(s) | 193 |
| BspDI | ATCGAT | 1 cut(s) | 1926 |
| BspFNI | CGCG | 4 cut(s) | 1321, 1323, 1633, 1635 |
| BspMI | ACCTGC | 2 cut(s) | 2220, 2257 |
| BsrBI | CCGCTC | 2 cut(s) | 1186, 2066 |
| BsrDI | GCAATG | 1 cut(s) | 1748 |
| BsrFI | RCCGGY | 1 cut(s) | 2119 |
| BsrGI | TGTACA | 1 cut(s) | 193 |
| BsrI | ACTGG | 9 cut(s) | 639, 750, 1005, 1356, 1594, 1667, 1990, 2350, 2554 |
| BssAI | RCCGGY | 1 cut(s) | 2119 |
| BssHII | GCGCGC | 2 cut(s) | 1319, 1631 |
| BssSI | CACGAG | 3 cut(s) | 724, 979, 1362 |
| BssT1I | CCWWGG | 2 cut(s) | 2501, 2612 |
| Bst2BI | CACGAG | 3 cut(s) | 724, 979, 1362 |
| Bst6I | CTCTTC | 2 cut(s) | 484, 2350 |
| BstAUI | TGTACA | 1 cut(s) | 193 |
| BstBAI | YACGTR | 2 cut(s) | 303, 2446 |
| BstC8I | GCNNGC | 7 cut(s) | 1188, 1321, 1443, 1633, 1713, 2238, 2261 |
| BstDEI | CTNAG | 2 cut(s) | 1209, 1538 |
| BstDSI | CCRYGG | 1 cut(s) | 915 |
| BstFNI | CGCG | 4 cut(s) | 1321, 1323, 1633, 1635 |
| BstHHI | GCGC | 4 cut(s) | 1321, 1323, 1633, 1635 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1137, 1318, 1630, 2120 |
| BstNSI | RCATGY | 2 cut(s) | 1770, 2659 |
| BstSLI | GKGCMC | 6 cut(s) | 816, 1071, 1110, 1153, 1192, 1408 |
| BstSNI | TACGTA | 1 cut(s) | 303 |
| BstUI | CGCG | 4 cut(s) | 1321, 1323, 1633, 1635 |
| BstV1I | GCAGC | 2 cut(s) | 2275, 2288 |
| BstX2I | RGATCY | 6 cut(s) | 556, 1244, 1556, 2480, 2491, 2622 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2484 |
| BstYI | RGATCY | 6 cut(s) | 556, 1244, 1556, 2480, 2491, 2622 |
| Bsu15I | ATCGAT | 1 cut(s) | 1926 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1538 |
| BsuI | GTATCC | 1 cut(s) | 933 |
| BsuTUI | ATCGAT | 1 cut(s) | 1926 |
| BtgI | CCRYGG | 1 cut(s) | 915 |
| BtgZI | GCGATG | 3 cut(s) | 549, 1237, 2294 |
| BtrI | CACGTC | 1 cut(s) | 2677 |
| BtsIMutI | CAGTG | 7 cut(s) | 632, 743, 998, 1182, 1349, 1587, 1660 |
| BveI | ACCTGC | 2 cut(s) | 2220, 2257 |
| Cac8I | GCNNGC | 7 cut(s) | 1188, 1321, 1443, 1633, 1713, 2238, 2261 |
| CfoI | GCGC | 4 cut(s) | 1321, 1323, 1633, 1635 |
| Cfr10I | RCCGGY | 1 cut(s) | 2119 |
| Cfr9I | CCCGGG | 4 cut(s) | 871, 1109, 1126, 1191 |
| ClaI | ATCGAT | 1 cut(s) | 1926 |
| Csp6I | GTAC | 6 cut(s) | 194, 208, 227, 300, 304, 2077 |
| CviQI | GTAC | 6 cut(s) | 194, 208, 227, 300, 304, 2077 |
| DdeI | CTNAG | 2 cut(s) | 1209, 1538 |
| DraI | TTTAAA | 5 cut(s) | 540, 1948, 1957, 2380, 2427 |
| DraIII | CACNNNGTG | 1 cut(s) | 191 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1531 |
| EaeI | YGGCCR | 2 cut(s) | 912, 2486 |
| Eam1104I | CTCTTC | 2 cut(s) | 484, 2350 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1531 |
| EarI | CTCTTC | 2 cut(s) | 484, 2350 |
| EciI | GGCGGA | 3 cut(s) | 856, 1111, 2173 |
| Ecl136II | GAGCTC | 3 cut(s) | 741, 996, 1585 |
| Eco105I | TACGTA | 1 cut(s) | 303 |
| Eco130I | CCWWGG | 2 cut(s) | 2501, 2612 |
| Eco147I | AGGCCT | 2 cut(s) | 730, 985 |
| Eco24I | GRGCYC | 9 cut(s) | 743, 816, 998, 1071, 1110, 1153, 1192, 1408, 1587 |
| Eco47I | GGWCC | 9 cut(s) | 852, 864, 1119, 1204, 1459, 1533, 1729, 1854, 2640 |
| Eco53kI | GAGCTC | 3 cut(s) | 741, 996, 1585 |
| Eco72I | CACGTG | 1 cut(s) | 2446 |
| Eco81I | CCTNAGG | 1 cut(s) | 1538 |
| Eco88I | CYCGRG | 5 cut(s) | 871, 1109, 1126, 1191, 1463 |
| EcoICRI | GAGCTC | 3 cut(s) | 741, 996, 1585 |
| EcoO109I | RGGNCCY | 6 cut(s) | 812, 1067, 1149, 1404, 1533, 1714 |
| EcoT14I | CCWWGG | 2 cut(s) | 2501, 2612 |
| EcoT38I | GRGCYC | 9 cut(s) | 743, 816, 998, 1071, 1110, 1153, 1192, 1408, 1587 |
| ErhI | CCWWGG | 2 cut(s) | 2501, 2612 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1255, 1287 |
| FaqI | GGGAC | 3 cut(s) | 1519, 1828, 2356 |
| FauI | CCCGC | 3 cut(s) | 1179, 2071, 2191 |
| FauNDI | CATATG | 1 cut(s) | 1237 |
| FblI | GTMKAC | 1 cut(s) | 1518 |
| Fnu4HI | GCNGC | 3 cut(s) | 1739, 2264, 2277 |
| FriOI | GRGCYC | 9 cut(s) | 743, 816, 998, 1071, 1110, 1153, 1192, 1408, 1587 |
| Fsp4HI | GCNGC | 3 cut(s) | 1739, 2264, 2277 |
| FspBI | CTAG | 7 cut(s) | 609, 720, 975, 1788, 2502, 2511, 2613 |
| GlaI | GCGC | 4 cut(s) | 1320, 1322, 1632, 1634 |
| GluI | GCNGC | 3 cut(s) | 1739, 2264, 2277 |
| GsuI | CTGGAG | 3 cut(s) | 2026, 2152, 2367 |
| HhaI | GCGC | 4 cut(s) | 1321, 1323, 1633, 1635 |
| Hin6I | GCGC | 4 cut(s) | 1319, 1321, 1631, 1633 |
| HinP1I | GCGC | 4 cut(s) | 1319, 1321, 1631, 1633 |
| HincII | GTYRAC | 2 cut(s) | 314, 1519 |
| HindII | GTYRAC | 2 cut(s) | 314, 1519 |
| HinfI | GANTC | 4 cut(s) | 91, 1816, 2083, 2507 |
| HphI | GGTGA | 5 cut(s) | 391, 669, 924, 1714, 1855 |
| Hpy166II | GTNNAC | 8 cut(s) | 194, 306, 314, 632, 1204, 1459, 1519, 1729 |
| Hpy188III | TCNNGA | 2 cut(s) | 1603, 1813 |
| Hpy8I | GTNNAC | 8 cut(s) | 194, 306, 314, 632, 1204, 1459, 1519, 1729 |
| Hpy99I | CGWCG | 1 cut(s) | 1523 |
| HpyCH4IV | ACGT | 6 cut(s) | 206, 258, 302, 2419, 2445, 2676 |
| HpyCH4V | TGCA | 8 cut(s) | 271, 457, 1886, 2060, 2229, 2259, 2306, 2522 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1137, 1318, 1630, 2120 |
| HpyF3I | CTNAG | 2 cut(s) | 1209, 1538 |
| HpySE526I | ACGT | 6 cut(s) | 206, 258, 302, 2419, 2445, 2676 |
| HspAI | GCGC | 4 cut(s) | 1319, 1321, 1631, 1633 |
| KflI | GGGWCCC | 1 cut(s) | 1533 |
| LmnI | GCTCC | 9 cut(s) | 384, 738, 993, 1183, 1438, 1582, 1708, 2071, 2273 |
| Lsp1109I | GCAGC | 2 cut(s) | 2275, 2288 |
| LweI | GCATC | 2 cut(s) | 2006, 2315 |
| MaeI | CTAG | 7 cut(s) | 609, 720, 975, 1788, 2502, 2511, 2613 |
| MaeII | ACGT | 6 cut(s) | 206, 258, 302, 2419, 2445, 2676 |
| MaeIII | GTNAC | 5 cut(s) | 883, 1171, 1220, 1475, 1655 |
| MbiI | CCGCTC | 2 cut(s) | 1186, 2066 |
| MboII | GAAGA | 6 cut(s) | 498, 501, 1922, 1933, 2367, 2373 |
| MflI | RGATCY | 6 cut(s) | 556, 1244, 1556, 2480, 2491, 2622 |
| MlyI | GAGTC | 1 cut(s) | 1810 |
| MmeI | TCCRAC | 4 cut(s) | 68, 2033, 2121, 2251 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1334, 1646, 2311 |
| MvnI | CGCG | 4 cut(s) | 1321, 1323, 1633, 1635 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1137, 1318, 1630, 2120 |
| NdeI | CATATG | 1 cut(s) | 1237 |
| NmeAIII | GCCGAG | 2 cut(s) | 1239, 1494 |
| NmuCI | GTSAC | 5 cut(s) | 883, 1171, 1220, 1475, 1655 |
| NspI | RCATGY | 2 cut(s) | 1770, 2659 |
| PaeR7I | CTCGAG | 1 cut(s) | 1463 |
| PaqCI | CACCTGC | 1 cut(s) | 2220 |
| PasI | CCCWGGG | 3 cut(s) | 681, 936, 1258 |
| PauI | GCGCGC | 2 cut(s) | 1319, 1631 |
| PceI | AGGCCT | 2 cut(s) | 730, 985 |
| PciI | ACATGT | 2 cut(s) | 1766, 2655 |
| PfeI | GAWTC | 3 cut(s) | 91, 2083, 2507 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1453 |
| PfoI | TCCNGGA | 1 cut(s) | 854 |
| PkrI | GCNGC | 3 cut(s) | 1740, 2265, 2278 |
| PleI | GAGTC | 1 cut(s) | 1810 |
| PmaCI | CACGTG | 1 cut(s) | 2446 |
| PmlI | CACGTG | 1 cut(s) | 2446 |
| PpsI | GAGTC | 1 cut(s) | 1810 |
| Ppu21I | YACGTR | 2 cut(s) | 303, 2446 |
| PpuMI | RGGWCCY | 1 cut(s) | 1533 |
| PscI | ACATGT | 2 cut(s) | 1766, 2655 |
| PsiI | TTATAA | 2 cut(s) | 350, 2570 |
| Psp124BI | GAGCTC | 3 cut(s) | 743, 998, 1587 |
| Psp1406I | AACGTT | 1 cut(s) | 2419 |
| Psp5II | RGGWCCY | 1 cut(s) | 1533 |
| PspCI | CACGTG | 1 cut(s) | 2446 |
| PspOMI | GGGCCC | 6 cut(s) | 812, 1067, 1106, 1149, 1188, 1404 |
| PspPPI | RGGWCCY | 1 cut(s) | 1533 |
| PspXI | VCTCGAGB | 1 cut(s) | 1463 |
| PsuI | RGATCY | 6 cut(s) | 556, 1244, 1556, 2480, 2491, 2622 |
| PteI | GCGCGC | 2 cut(s) | 1319, 1631 |
| RsaI | GTAC | 6 cut(s) | 195, 209, 228, 301, 305, 2078 |
| RsaNI | GTAC | 6 cut(s) | 194, 208, 227, 300, 304, 2077 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1334, 1646, 2311 |
| SacI | GAGCTC | 3 cut(s) | 743, 998, 1587 |
| SalI | GTCGAC | 1 cut(s) | 1517 |
| SatI | GCNGC | 3 cut(s) | 1739, 2264, 2277 |
| ScaI | AGTACT | 1 cut(s) | 2078 |
| SchI | GAGTC | 1 cut(s) | 1810 |
| SfaNI | GCATC | 2 cut(s) | 2006, 2315 |
| Sfr274I | CTCGAG | 1 cut(s) | 1463 |
| SinI | GGWCC | 9 cut(s) | 852, 864, 1119, 1204, 1459, 1533, 1729, 1854, 2640 |
| SlaI | CTCGAG | 1 cut(s) | 1463 |
| SmaI | CCCGGG | 4 cut(s) | 873, 1111, 1128, 1193 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1334, 1646, 2311 |
| SmlI | CTYRAG | 1 cut(s) | 1463 |
| SmoI | CTYRAG | 1 cut(s) | 1463 |
| SnaBI | TACGTA | 1 cut(s) | 303 |
| SseBI | AGGCCT | 2 cut(s) | 730, 985 |
| SspI | AATATT | 2 cut(s) | 166, 2413 |
| SspMI | CTAG | 7 cut(s) | 609, 720, 975, 1788, 2502, 2511, 2613 |
| SstI | GAGCTC | 3 cut(s) | 743, 998, 1587 |
| StuI | AGGCCT | 2 cut(s) | 730, 985 |
| StyI | CCWWGG | 2 cut(s) | 2501, 2612 |
| TaiI | ACGT | 6 cut(s) | 209, 261, 305, 2422, 2448, 2679 |
| TaqI | TCGA | 6 cut(s) | 395, 1464, 1518, 1926, 2081, 2190 |
| TatI | WGTACW | 2 cut(s) | 193, 2076 |
| TauI | GCSGC | 1 cut(s) | 1741 |
| TfiI | GAWTC | 3 cut(s) | 91, 2083, 2507 |
| TscAI | CASTG | 7 cut(s) | 639, 750, 1005, 1182, 1356, 1594, 1667 |
| TseFI | GTSAC | 5 cut(s) | 883, 1171, 1220, 1475, 1655 |
| TseI | GCWGC | 2 cut(s) | 2263, 2276 |
| Tsp45I | GTSAC | 5 cut(s) | 883, 1171, 1220, 1475, 1655 |
| TspDTI | ATGAA | 3 cut(s) | 22, 588, 2603 |
| TspGWI | ACGGA | 3 cut(s) | 748, 1003, 2607 |
| TspMI | CCCGGG | 4 cut(s) | 871, 1109, 1126, 1191 |
| TspRI | CASTG | 7 cut(s) | 639, 750, 1005, 1182, 1356, 1594, 1667 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1453 |
| VpaK11BI | GGWCC | 9 cut(s) | 852, 864, 1119, 1204, 1459, 1533, 1729, 1854, 2640 |
| XapI | RAATTY | 7 cut(s) | 517, 1668, 1754, 1776, 1888, 1952, 2218 |
| XceI | RCATGY | 2 cut(s) | 1770, 2659 |
| XhoI | CTCGAG | 1 cut(s) | 1463 |
| XmaI | CCCGGG | 4 cut(s) | 871, 1109, 1126, 1191 |
| XmaJI | CCTAGG | 2 cut(s) | 2501, 2612 |
| XmiI | GTMKAC | 1 cut(s) | 1518 |
| XspI | CTAG | 7 cut(s) | 609, 720, 975, 1788, 2502, 2511, 2613 |
| ZrmI | AGTACT | 1 cut(s) | 2078 |