pycom01g11940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000158
Physical Location & Seq
Forward (+)
12927578 .. 12931388
3811 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11940.4

Sequence Viewer

Length: 2865 bp
ATGCATAGGGTGAATTCAAGCTCGTACTTCTGGCAGTATATATTATCAGAATCTGGAATGCATATCAAATTCTCATGTAAGATTTCGATAATTTTAGCAAACCCATTTGGTCTTGACTCCTGCAAGGTCTTATCTATGAAATATCAGAGCTTACTTTATGTTCCTTTTCCTTGTAGGTTAGAACTCAGACAAAGAGTGAGCCGAGAGTTCCTTAACCACAGTGATCAAGAGCTATCGGATTTTATTTTACCGACGTTGATATGGAGAGAAGCCAGATACATTTTCCACCACGCGTTGCACTGGATGATTACGAACAATAGCAAAGCACAAGATTCTTTTCCAAAACTTACAAAATACTATCTCAACTATTGGTCTCACGACACTTTCATACGTCATATTTTTAAAATGACAATGTCATACCTCATCTTACGAATTTGTGCCAATGTCATACATCCGTCAGTTTTTCTGTTAATTTCTCAAAAAGTTATAAAAAAAATTAAAAAAAAAACCAAACAAAACTTCCCTTCCGCGCCCTCTCTCTTCTCCCTTCCTCTTCTTCCTCCATGCTGCAACCCAGAAAAAAAAAAAAAAAAAAAAAACCAAACAAAACTTAACTTGTCCTTTCCCTCCTGCACCCTCTCTCTTCTCCCCCATCTTCATCTTCTTTCCTCTTCTTCCTACATGGGAGCCTTTTGGGAGCTCACTGGCTTCGGGTTCCATGGGAACTTTGAAGTTAAGCGAGTAGCACGCGAGAGCACTCCCAGGATGGGTGACCCATCGGGAAGTTCTCGTGTGAGTTCCCAGAAACAAAACCATGAGGGCGTGGTTGGGGCCCAAAGCGGACAATATCGTGCTACGGTGGTGGAGCATGCCTGGGTTGTGGTGGACCCGGGGCTGGGATGTGACAATTTGGTATCAGAGCCTAACCTTGGCCGTGGTGTGCCGACGAGGACGTCGGTGATCCTTAAATGTATATTCCCATCCCTACCTAGCACAAGGCCTTTTGGGAGCTCATTGGCTTCGGGTTCCATGGGAACTCCGAAGTTAATTCCCAGAAACAAAACCATGAGGGCGTGGTTGGGGCCCAAAGCGGACAATATCGTGCTACGGTGGTGGAGCATGCCTGGGTTGTGGTGGACCCGAGGCGGGGATGTGACAATTTGGTATCAGAGCCTAACCTTGGCCGTGGTGTGCCGACGAGGACGTCGGGCCCCTGAGGGGGGGTGGATTCACGAGGCCTTTTGGGAGCTCACTGGCTTCAGGTTCCATGGGAACTCCGAAGTTAAGCGAGTAGCGCGCGAGAGCATTCCCAGGATGGGTGACCCATTGGGAAGTTTTCGTGTGAGTTCCCAAAAACAAATCCGTAAGGGCGTGGTCGGGGCCCAAAGCGGACAATATCGTGCTACGGTGGTGGAGCGGGCCCGGGAAGTGGTCCCCCCCGGGCCAGGATGTGACATTCATCTCCCTTCCTCTTTTTCCTACAAGCCTCCCCCCTCTCTCTTTTCCCCTATCTTCATCTCCTTTCCTGTTCTTCCTACCTGCTGCAACCCAGGAAAAAGAAAGAAAAAAAAATACACAAAACTTTGTCCCTTCAACCCCCCCCCCCCCCCCCCCCCGCGGCCTCTCTCTTCTCCCCCATCTTCATCTTCTTTCATCTTCTTCCCCCTATCTACTGCAACCCAAAAAAAAGAAAAGAAAAGAAAAAAAAACCAATTGTCTTTACCTGCACCCACCATCCACACCCAACCTCGCACCCATGGTGGTTGGGGTTTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTTGAGGGGTGGGGTGGTTGGGGGTTGGGGTAAGCAGGGAAGAAGATTAAGATGGGGAGAGAGAGAAGGGGGGAAGGGACGAAAGGTTTTTACAAAAAATTACATCAACTATTGGTGTCACGACACTTTCATACCTTATCGTTTAAAATTGACAATGTTATACCTCATCTTTAGAATTTGGTCCAATGTTATACCTTTCGTTACTTGGTCGTTTACTTTTCAGTTAAATGCTGACAGTTCGTCCCTCCCCCTCCCCCCTCCTCTCTCTTCTCCCCCCCCCCCACCTACAAACCCAAAAAAAATAAAAAATAAAAAAATAAAAAATCCAATTGGTCTTCCCCTGCACCGACCCTTAGTTTGTCTTCCGCCCTCCCCACCCCCTCTTCTCCTTCTTGCAACCCAGAAAAAAAAAAAAAAAAAAAAAGAAACCCAGACCCCGTCGGCGGGAAGATGGGGGGTTGGGGGAGGGGGGAACGAACTGGGTTCACTTTGGAATTTTTTTTTCTTTTCTTTTTCTTCTCCTTCTTCTTCTTTATGGGTTGATTGGGGGGGGGGGTGGAGAAGGTACACGAACTGGGCTGGGTTGAGTTTTTTTTTTTTTGTTTTTTTATTCTTCTTCTTCTTCTTCCTCTTTCTTCTTTCTGGGTTGCAGGGGGTTTGGATGGAGGGGGCGAACTGGGTTGGGTTGGAATTTTTTTTTTCTTTTTTCTTCCTCTTCTTCTTCTTCCTCCTTCTCCTTCTCCTTCTCCTTCTTCCATGTGGCGAGCGGCCGGGGGGGGGATTGATGGGTTTTCAATTTTTTTCTTCTTCCTTCTCCTTTTTTTCCTCTTCTTGTTCTTCTTCCTCCTCCTTCCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTTTCGCGCGCACACCGGGGGGAGGGGGTGGGTAGGTTGATTGGGTATTCAAAATTTTTTTTTGAGGGGGGGGGGGAACGGACGAATAGAGGGATTTTTTTTAATTTTTTTTTACTTTTCTTTATTATTTTAAAAAATATTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

955

Amino Acids

108.03

Weight (kDa)

10.29

Isoelectric Point (pI)

51.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 488
AasI GACNNNNNNGTC 2 cut(s) 952, 1203
AatII GACGTC 2 cut(s) 956, 1207
Acc36I ACCTGC 2 cut(s) 1547, 1732
AccBSI CCGCTC 2 cut(s) 1417, 2602
AccII CGCG 8 cut(s) 293, 530, 750, 1297, 1299, 1618, 2725, 2727
AclWI GGATC 1 cut(s) 955
AcoI YGGCCR 3 cut(s) 931, 1182, 2603
AcsI RAATTY 7 cut(s) 13, 68, 432, 2010, 2329, 2525, 2771
AcuI CTGAAG 1 cut(s) 1243
AcyI GRCGYC 2 cut(s) 953, 1204
AfaI GTAC 2 cut(s) 26, 2402
AflIII ACRYGT 1 cut(s) 291
AgsI TTSAA 5 cut(s) 18, 731, 1594, 2630, 2769
AhdI GACNNNNNGTC 1 cut(s) 2074
AjnI CCWGG 6 cut(s) 761, 872, 1123, 1310, 1444, 1549
AjuI GAANNNNNNNTTGG 2 cut(s) 503, 535
AluBI AGCT 6 cut(s) 21, 150, 232, 700, 1011, 1249
AluI AGCT 6 cut(s) 21, 150, 232, 700, 1011, 1249
Alw21I GWGCWC 4 cut(s) 702, 758, 1013, 1251
Alw26I GTCTC 1 cut(s) 378
AlwI GGATC 1 cut(s) 955
AlwNI CAGNNNCTG 1 cut(s) 53
Ama87I CYCGRG 4 cut(s) 889, 1140, 1422, 1439
ApaI GGGCCC 5 cut(s) 835, 1086, 1213, 1384, 1423
ApeKI GCWGC 2 cut(s) 567, 1542
ApoI RAATTY 7 cut(s) 13, 68, 432, 2010, 2329, 2525, 2771
ArsI GACNNNNNNTTYG 2 cut(s) 2175, 2207
AspLEI GCGC 5 cut(s) 532, 1297, 1299, 2727, 2729
AsuC2I CCSGG 8 cut(s) 890, 891, 1423, 1424, 1440, 1441, 2607, 2735
AsuHPI GGTGA 4 cut(s) 22, 782, 970, 1331
AvaI CYCGRG 4 cut(s) 889, 1140, 1422, 1439
AvaII GGWCC 4 cut(s) 886, 1137, 1432, 2016
AxyI CCTNAGG 1 cut(s) 1215
BaeGI GKGCMC 5 cut(s) 835, 1086, 1213, 1384, 1423
BanII GRGCYC 8 cut(s) 702, 835, 1013, 1086, 1213, 1251, 1384, 1423
BauI CACGAG 2 cut(s) 789, 1232
BbsI GAAGAC 2 cut(s) 2162, 2189
Bbv12I GWGCWC 4 cut(s) 702, 758, 1013, 1251
BbvI GCAGC 2 cut(s) 554, 1529
BceAI ACGGC 2 cut(s) 918, 1169
BciT130I CCWGG 6 cut(s) 763, 874, 1125, 1312, 1446, 1551
BclI TGATCA 1 cut(s) 223
BcnI CCSGG 8 cut(s) 890, 891, 1423, 1424, 1440, 1441, 2607, 2735
BcoDI GTCTC 1 cut(s) 378
BfaI CTAG 1 cut(s) 990
BfuAI ACCTGC 2 cut(s) 1547, 1732
BisI GCNGC 4 cut(s) 568, 1543, 1619, 2603
BlsI GCNGC 4 cut(s) 569, 1544, 1620, 2604
Bme18I GGWCC 4 cut(s) 886, 1137, 1432, 2016
BmeRI GACNNNNNGTC 1 cut(s) 2074
BmeT110I CYCGRG 4 cut(s) 889, 1140, 1422, 1439
BmrI ACTGGG 3 cut(s) 2324, 2419, 2521
BmuI ACTGGG 3 cut(s) 2324, 2419, 2521
BpiI GAAGAC 2 cut(s) 2162, 2189
BpuMI CCSGG 8 cut(s) 890, 891, 1423, 1424, 1440, 1441, 2607, 2735
BsaHI GRCGYC 2 cut(s) 953, 1204
BsaI GGTCTC 1 cut(s) 378
Bse1I ACTGG 6 cut(s) 305, 709, 1258, 2319, 2414, 2516
Bse21I CCTNAGG 1 cut(s) 1215
BseBI CCWGG 6 cut(s) 763, 874, 1125, 1312, 1446, 1551
BseMII CTCAG 2 cut(s) 199, 1206
BseNI ACTGG 6 cut(s) 305, 709, 1258, 2319, 2414, 2516
BsePI GCGCGC 2 cut(s) 1295, 2725
BseRI GAGGAG 2 cut(s) 2085, 2671
BseSI GKGCMC 5 cut(s) 835, 1086, 1213, 1384, 1423
BseX3I CGGCCG 1 cut(s) 2603
BseXI GCAGC 2 cut(s) 554, 1529
BseYI CCCAGC 2 cut(s) 895, 2414
BsgI GTGCAG 3 cut(s) 616, 1710, 2162
Bsh1236I CGCG 8 cut(s) 293, 530, 750, 1297, 1299, 1618, 2725, 2727
Bsh1285I CGRYCG 1 cut(s) 2606
BsiEI CGRYCG 1 cut(s) 2606
BsiHKAI GWGCWC 4 cut(s) 702, 758, 1013, 1251
BsiHKCI CYCGRG 4 cut(s) 889, 1140, 1422, 1439
BsiSI CCGG 5 cut(s) 890, 1423, 1440, 2606, 2734
BslFI GGGAC 4 cut(s) 1418, 1572, 1926, 2062
BsmAI GTCTC 1 cut(s) 378
BsmFI GGGAC 4 cut(s) 1418, 1572, 1926, 2062
BsmI GAATGC 2 cut(s) 63, 1305
Bso31I GGTCTC 1 cut(s) 378
BsoBI CYCGRG 4 cut(s) 889, 1140, 1422, 1439
Bsp120I GGGCCC 5 cut(s) 831, 1082, 1209, 1380, 1419
Bsp1286I GDGCHC 9 cut(s) 702, 758, 835, 1013, 1086, 1213, 1251, 1384, 1423
Bsp143I GATC 2 cut(s) 223, 960
Bsp19I CCATGG 4 cut(s) 718, 1029, 1267, 1756
BspCNI CTCAG 2 cut(s) 198, 1207
BspFNI CGCG 8 cut(s) 293, 530, 750, 1297, 1299, 1618, 2725, 2727
BspMI ACCTGC 2 cut(s) 1547, 1732
BspPI GGATC 1 cut(s) 955
BspTNI GGTCTC 1 cut(s) 378
BsrBI CCGCTC 2 cut(s) 1417, 2602
BsrI ACTGG 6 cut(s) 305, 709, 1258, 2319, 2414, 2516
BssHII GCGCGC 2 cut(s) 1295, 2725
BssMI GATC 2 cut(s) 223, 960
BssNI GRCGYC 2 cut(s) 953, 1204
BssSI CACGAG 2 cut(s) 789, 1232
BssT1I CCWWGG 6 cut(s) 718, 928, 1029, 1179, 1267, 1756
Bst2BI CACGAG 2 cut(s) 789, 1232
Bst2UI CCWGG 6 cut(s) 763, 874, 1125, 1312, 1446, 1551
Bst4CI ACNGT 5 cut(s) 221, 859, 1110, 1408, 2072
Bst6I CTCTTC 9 cut(s) 545, 558, 648, 676, 1633, 2107, 2223, 2555, 2668
BstACI GRCGYC 2 cut(s) 953, 1204
BstC8I GCNNGC 7 cut(s) 748, 870, 1121, 1297, 1419, 2600, 2727
BstDEI CTNAG 3 cut(s) 185, 1215, 2188
BstDSI CCRYGG 7 cut(s) 718, 934, 1029, 1185, 1267, 1616, 1756
BstEII GGTNACC 2 cut(s) 770, 1319
BstFNI CGCG 8 cut(s) 293, 530, 750, 1297, 1299, 1618, 2725, 2727
BstHHI GCGC 5 cut(s) 532, 1297, 1299, 2727, 2729
BstKTI GATC 2 cut(s) 226, 963
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 2 cut(s) 223, 960
BstMCI CGRYCG 1 cut(s) 2606
BstMWI GCNNNNNNNGC 1 cut(s) 1294
BstNI CCWGG 6 cut(s) 763, 874, 1125, 1312, 1446, 1551
BstNSI RCATGY 2 cut(s) 872, 1123
BstPI GGTNACC 2 cut(s) 770, 1319
BstSLI GKGCMC 5 cut(s) 835, 1086, 1213, 1384, 1423
BstUI CGCG 8 cut(s) 293, 530, 750, 1297, 1299, 1618, 2725, 2727
BstV1I GCAGC 2 cut(s) 554, 1529
BstV2I GAAGAC 2 cut(s) 2162, 2189
BstZI CGGCCG 1 cut(s) 2603
Bsu36I CCTNAGG 1 cut(s) 1215
BtgI CCRYGG 7 cut(s) 718, 934, 1029, 1185, 1267, 1616, 1756
BtsIMutI CAGTG 4 cut(s) 226, 298, 702, 1251
BveI ACCTGC 2 cut(s) 1547, 1732
Cac8I GCNNGC 7 cut(s) 748, 870, 1121, 1297, 1419, 2600, 2727
CaiI CAGNNNCTG 1 cut(s) 53
CfoI GCGC 5 cut(s) 532, 1297, 1299, 2727, 2729
Cfr42I CCGCGG 1 cut(s) 1619
Cfr9I CCCGGG 3 cut(s) 889, 1422, 1439
Csp6I GTAC 2 cut(s) 25, 2401
CviQI GTAC 2 cut(s) 25, 2401
DdeI CTNAG 3 cut(s) 185, 1215, 2188
DpnI GATC 2 cut(s) 225, 962
DpnII GATC 2 cut(s) 223, 960
DraI TTTAAA 3 cut(s) 403, 1980, 2850
DrdI GACNNNNNNGTC 2 cut(s) 952, 1203
DriI GACNNNNNGTC 1 cut(s) 2074
DseDI GACNNNNNNGTC 2 cut(s) 952, 1203
EaeI YGGCCR 3 cut(s) 931, 1182, 2603
EagI CGGCCG 1 cut(s) 2603
Eam1104I CTCTTC 9 cut(s) 545, 558, 648, 676, 1633, 2107, 2223, 2555, 2668
Eam1105I GACNNNNNGTC 1 cut(s) 2074
EarI CTCTTC 9 cut(s) 545, 558, 648, 676, 1633, 2107, 2223, 2555, 2668
EciI GGCGGA 1 cut(s) 2190
Ecl136II GAGCTC 3 cut(s) 700, 1011, 1249
EclXI CGGCCG 1 cut(s) 2603
Eco130I CCWWGG 6 cut(s) 718, 928, 1029, 1179, 1267, 1756
Eco147I AGGCCT 2 cut(s) 1000, 1238
Eco24I GRGCYC 8 cut(s) 702, 835, 1013, 1086, 1213, 1251, 1384, 1423
Eco31I GGTCTC 1 cut(s) 378
Eco47I GGWCC 4 cut(s) 886, 1137, 1432, 2016
Eco52I CGGCCG 1 cut(s) 2603
Eco53kI GAGCTC 3 cut(s) 700, 1011, 1249
Eco57I CTGAAG 1 cut(s) 1243
Eco81I CCTNAGG 1 cut(s) 1215
Eco88I CYCGRG 4 cut(s) 889, 1140, 1422, 1439
Eco91I GGTNACC 2 cut(s) 770, 1319
EcoICRI GAGCTC 3 cut(s) 700, 1011, 1249
EcoO109I RGGNCCY 4 cut(s) 831, 1082, 1210, 1380
EcoO65I GGTNACC 2 cut(s) 770, 1319
EcoRI GAATTC 1 cut(s) 13
EcoRII CCWGG 6 cut(s) 761, 872, 1123, 1310, 1444, 1549
EcoT14I CCWWGG 6 cut(s) 718, 928, 1029, 1179, 1267, 1756
EcoT22I ATGCAT 2 cut(s) 6, 63
EcoT38I GRGCYC 8 cut(s) 702, 835, 1013, 1086, 1213, 1251, 1384, 1423
ErhI CCWWGG 6 cut(s) 718, 928, 1029, 1179, 1267, 1756
FaqI GGGAC 4 cut(s) 1418, 1572, 1926, 2062
FauI CCCGC 4 cut(s) 1139, 1410, 1623, 2272
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 4 cut(s) 568, 1543, 1619, 2603
FriOI GRGCYC 8 cut(s) 702, 835, 1013, 1086, 1213, 1251, 1384, 1423
Fsp4HI GCNGC 4 cut(s) 568, 1543, 1619, 2603
FspBI CTAG 1 cut(s) 990
GlaI GCGC 5 cut(s) 531, 1296, 1298, 2726, 2728
GluI GCNGC 4 cut(s) 568, 1543, 1619, 2603
GsaI CCCAGC 2 cut(s) 899, 2418
HapII CCGG 5 cut(s) 890, 1423, 1440, 2606, 2734
HhaI GCGC 5 cut(s) 532, 1297, 1299, 2727, 2729
Hin1I GRCGYC 2 cut(s) 953, 1204
Hin6I GCGC 5 cut(s) 530, 1295, 1297, 2725, 2727
HinP1I GCGC 5 cut(s) 530, 1295, 1297, 2725, 2727
HinfI GANTC 4 cut(s) 50, 116, 332, 1228
HpaII CCGG 5 cut(s) 890, 1423, 1440, 2606, 2734
HphI GGTGA 4 cut(s) 22, 782, 970, 1331
Hpy166II GTNNAC 5 cut(s) 886, 1137, 2049, 2321, 2403
Hpy188I TCNGA 8 cut(s) 49, 147, 188, 238, 919, 1041, 1170, 1279
Hpy188III TCNNGA 7 cut(s) 54, 113, 227, 377, 780, 1232, 1955
Hpy8I GTNNAC 5 cut(s) 886, 1137, 2049, 2321, 2403
Hpy99I CGWCG 6 cut(s) 256, 949, 958, 1200, 1209, 2278
HpyCH4III ACNGT 5 cut(s) 221, 859, 1110, 1408, 2072
HpyCH4IV ACGT 4 cut(s) 254, 391, 953, 1204
HpyF10VI GCNNNNNNNGC 1 cut(s) 1294
HpyF3I CTNAG 3 cut(s) 185, 1215, 2188
HpySE526I ACGT 4 cut(s) 254, 391, 953, 1204
Hsp92I GRCGYC 2 cut(s) 953, 1204
HspAI GCGC 5 cut(s) 530, 1295, 1297, 2725, 2727
Ksp22I TGATCA 1 cut(s) 223
KspI CCGCGG 1 cut(s) 1619
Kzo9I GATC 2 cut(s) 223, 960
LmnI GCTCC 7 cut(s) 686, 697, 865, 1008, 1116, 1246, 1414
Lsp1109I GCAGC 2 cut(s) 554, 1529
MaeI CTAG 1 cut(s) 990
MaeII ACGT 4 cut(s) 254, 391, 953, 1204
MaeIII GTNAC 7 cut(s) 770, 902, 1153, 1319, 1451, 1952, 2035
MalI GATC 2 cut(s) 225, 962
MbiI CCGCTC 2 cut(s) 1417, 2602
MboI GATC 2 cut(s) 223, 960
MfeI CAATTG 2 cut(s) 1712, 2163
MhlI GDGCHC 9 cut(s) 702, 758, 835, 1013, 1086, 1213, 1251, 1384, 1423
MluI ACGCGT 1 cut(s) 291
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 2502
Mph1103I ATGCAT 2 cut(s) 6, 63
MspA1I CMGCKG 1 cut(s) 1618
MspI CCGG 5 cut(s) 890, 1423, 1440, 2606, 2734
MunI CAATTG 2 cut(s) 1712, 2163
Mva1269I GAATGC 2 cut(s) 63, 1305
MvaI CCWGG 6 cut(s) 763, 874, 1125, 1312, 1446, 1551
MvnI CGCG 8 cut(s) 293, 530, 750, 1297, 1299, 1618, 2725, 2727
MwoI GCNNNNNNNGC 1 cut(s) 1294
NciI CCSGG 8 cut(s) 890, 891, 1423, 1424, 1440, 1441, 2607, 2735
NcoI CCATGG 4 cut(s) 718, 1029, 1267, 1756
NdeII GATC 2 cut(s) 223, 960
NmeAIII GCCGAG 1 cut(s) 227
NmuCI GTSAC 6 cut(s) 770, 902, 1153, 1319, 1451, 1952
NsiI ATGCAT 2 cut(s) 6, 63
NspI RCATGY 2 cut(s) 872, 1123
PaeI GCATGC 2 cut(s) 872, 1123
PauI GCGCGC 2 cut(s) 1295, 2725
PceI AGGCCT 2 cut(s) 1000, 1238
PctI GAATGC 2 cut(s) 63, 1305
PfeI GAWTC 3 cut(s) 50, 332, 1228
PflFI GACNNNGTC 2 cut(s) 412, 2272
PkrI GCNGC 4 cut(s) 569, 1544, 1620, 2604
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
PsiI TTATAA 1 cut(s) 488
Psp124BI GAGCTC 3 cut(s) 702, 1013, 1251
Psp6I CCWGG 6 cut(s) 761, 872, 1123, 1310, 1444, 1549
PspEI GGTNACC 2 cut(s) 770, 1319
PspFI CCCAGC 2 cut(s) 895, 2414
PspGI CCWGG 6 cut(s) 761, 872, 1123, 1310, 1444, 1549
PspOMI GGGCCC 5 cut(s) 831, 1082, 1209, 1380, 1419
PstNI CAGNNNCTG 1 cut(s) 53
PsyI GACNNNGTC 2 cut(s) 412, 2272
PteI GCGCGC 2 cut(s) 1295, 2725
RsaI GTAC 2 cut(s) 26, 2402
RsaNI GTAC 2 cut(s) 25, 2401
SacI GAGCTC 3 cut(s) 702, 1013, 1251
SacII CCGCGG 1 cut(s) 1619
SatI GCNGC 4 cut(s) 568, 1543, 1619, 2603
Sau3AI GATC 2 cut(s) 223, 960
SchI GAGTC 1 cut(s) 110
SduI GDGCHC 9 cut(s) 702, 758, 835, 1013, 1086, 1213, 1251, 1384, 1423
Sfr303I CCGCGG 1 cut(s) 1619
SgrBI CCGCGG 1 cut(s) 1619
SinI GGWCC 4 cut(s) 886, 1137, 1432, 2016
SmaI CCCGGG 3 cut(s) 891, 1424, 1441
SphI GCATGC 2 cut(s) 872, 1123
SseBI AGGCCT 2 cut(s) 1000, 1238
SspI AATATT 1 cut(s) 2857
SspMI CTAG 1 cut(s) 990
SstI GAGCTC 3 cut(s) 702, 1013, 1251
StuI AGGCCT 2 cut(s) 1000, 1238
StyI CCWWGG 6 cut(s) 718, 928, 1029, 1179, 1267, 1756
TaaI ACNGT 5 cut(s) 221, 859, 1110, 1408, 2072
TaiI ACGT 4 cut(s) 257, 394, 956, 1207
TaqI TCGA 1 cut(s) 86
TauI GCSGC 2 cut(s) 1621, 2605
TfiI GAWTC 3 cut(s) 50, 332, 1228
TscAI CASTG 4 cut(s) 226, 305, 709, 1258
TseFI GTSAC 6 cut(s) 770, 902, 1153, 1319, 1451, 1952
TseI GCWGC 2 cut(s) 567, 1542
Tsp45I GTSAC 6 cut(s) 770, 902, 1153, 1319, 1451, 1952
TspDTI ATGAA 8 cut(s) 152, 376, 647, 1448, 1504, 1632, 1642, 1954
TspGWI ACGGA 3 cut(s) 444, 1352, 2812
TspMI CCCGGG 3 cut(s) 889, 1422, 1439
TspRI CASTG 4 cut(s) 226, 305, 709, 1258
Tth111I GACNNNGTC 2 cut(s) 412, 2272
VpaK11BI GGWCC 4 cut(s) 886, 1137, 1432, 2016
XapI RAATTY 7 cut(s) 13, 68, 432, 2010, 2329, 2525, 2771
XceI RCATGY 2 cut(s) 872, 1123
XmaI CCCGGG 3 cut(s) 889, 1422, 1439
XspI CTAG 1 cut(s) 990
ZraI GACGTC 2 cut(s) 954, 1205
Zsp2I ATGCAT 2 cut(s) 6, 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.