pycom13g18580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000158
Physical Location & Seq
Forward (+)
14666535 .. 14668071
1537 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g18580.2

Sequence Viewer

Length: 1110 bp
ATGTGGTTCAAATTCGCTTTTAGAACACCACTAGATCGTAATACTAAGTGGCAAATACATACAATCCCTACAAAAAGTAAATGTCTTCCTAATTATCTCTTTAATTATTTCTTCTTATTTCTTTTTGTTGCAGAATATCTCTTTATATTCCCATTAGGAGTTAATTACCTATTAAGAGTTGCACAATGTGGTGGAATAGAACATATCTCACAACTACACATCTCTCTCTTCTCTCTACTATTGCCGCACCCTTCTCTCTATGGTGTAACATCCCACATCCACGAGGCCTTTTGGGAGCTCACTGGCTTCGGGTTCCATTGGAACTCCGAAGTTAAGCGAGTAGCGCGCGAGAGCAATCCTATGATGGGCGACCCACTCAGAAGTTCTCGTGTGAGTTCCCATAAACAAAACCGTGAGGGCGTGGTCGGAGCCCAAAGCGAACAATATTGTGCTACGGTGGTGGAGCGGGCCCGGGAAGTGATATGCCCCGGGCCGGGATGTGACAATTTGGTATCAGAGCCTAACCCTGGGCGCATGTGTGCCAACGAGGACGTCGGGCCCTTAAGGGGGTGGATTGTAACATCCCACATCGTCCGAGGCCTTTTGGGACGAGTTGCACGCGAGAGCAATCTTATGATGAGTGACCTACTAGGAAGTTCTCGTGTGAGTTTCCAAAAACAAAACCGTGAGGGTGTGGCCGGGGCCCAAAACGGACAATATTGTACTACGGTGGAGTCGAGCCTGGGTTGTGGTCGAGGCCCGGGCCGAGATGTGACAATTTGGTATCAAAGCCTAACCTGGGCGCGTGTGTGCCGGCGAGGACGTCGGGCCCCTAAGGGGGGGTGGATTATAACATCCCACATCGTCCAGGGGAGTGGATCCTGTAAACCTTATATCTCACTGGCTTTGGGTTCCATAGGAACTCCGAAGTTAATTCCTAGAAACAAAATCGTGAGGGTGTCGCTTGGGCCCAAAGCGGACAATATCGTACTACAGTGGAGTCGAGCCCGGGTTAGAGTTTTATTCTTCAGTAAATTATTCCTACATCACGCTATTGACGTTACGCTAAAGAGAGTTTTATTCTTCAATCAAGAGAGTATTACGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

370

Amino Acids

41.58

Weight (kDa)

9.88

Isoelectric Point (pI)

41.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 851
AatII GACGTC 2 cut(s) 555, 826
AccBSI CCGCTC 1 cut(s) 466
AccII CGCG 4 cut(s) 346, 348, 621, 805
AciI CCGC 3 cut(s) 245, 466, 977
AclWI GGATC 2 cut(s) 873, 886
AcoI YGGCCR 1 cut(s) 696
AcsI RAATTY 1 cut(s) 11
AcuI CTGAAG 1 cut(s) 1012
AcyI GRCGYC 2 cut(s) 552, 823
AdeI CACNNNGTG 1 cut(s) 188
AfaI GTAC 2 cut(s) 724, 990
AflII CTTAAG 1 cut(s) 562
AgsI TTSAA 2 cut(s) 10, 1087
AjnI CCWGG 4 cut(s) 526, 741, 797, 867
AluBI AGCT 1 cut(s) 298
AluI AGCT 1 cut(s) 298
Alw21I GWGCWC 1 cut(s) 300
AlwI GGATC 2 cut(s) 873, 886
Ama87I CYCGRG 4 cut(s) 471, 488, 760, 1008
ApaI GGGCCC 5 cut(s) 472, 561, 706, 832, 972
ApoI RAATTY 1 cut(s) 11
AspLEI GCGC 4 cut(s) 346, 348, 534, 805
AvaI CYCGRG 4 cut(s) 471, 488, 760, 1008
AxyI CCTNAGG 1 cut(s) 834
BaeGI GKGCMC 5 cut(s) 472, 561, 706, 832, 972
BamHI GGATCC 1 cut(s) 878
BanII GRGCYC 8 cut(s) 300, 433, 472, 561, 706, 832, 972, 1009
BauI CACGAG 3 cut(s) 281, 387, 660
BbsI GAAGAC 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 300
BccI CCATC 1 cut(s) 358
BciT130I CCWGG 4 cut(s) 528, 743, 799, 869
BfaI CTAG 3 cut(s) 32, 650, 939
BfmI CTRYAG 1 cut(s) 992
BfrI CTTAAG 1 cut(s) 562
BisI GCNGC 1 cut(s) 245
BlsI GCNGC 1 cut(s) 246
BmeT110I CYCGRG 4 cut(s) 471, 488, 760, 1008
BpiI GAAGAC 1 cut(s) 77
BsaHI GRCGYC 2 cut(s) 552, 823
Bse118I RCCGGY 1 cut(s) 813
Bse1I ACTGG 2 cut(s) 307, 906
Bse21I CCTNAGG 1 cut(s) 834
BseBI CCWGG 4 cut(s) 528, 743, 799, 869
BseGI GGATG 5 cut(s) 269, 276, 503, 581, 854
BseMII CTCAG 1 cut(s) 391
BseNI ACTGG 2 cut(s) 307, 906
BsePI GCGCGC 1 cut(s) 344
BseSI GKGCMC 5 cut(s) 472, 561, 706, 832, 972
Bsh1236I CGCG 4 cut(s) 346, 348, 621, 805
BsiHKAI GWGCWC 1 cut(s) 300
BsiHKCI CYCGRG 4 cut(s) 471, 488, 760, 1008
BsiSI CCGG 7 cut(s) 472, 489, 494, 699, 761, 814, 1009
BslFI GGGAC 1 cut(s) 621
BsmFI GGGAC 1 cut(s) 621
BsoBI CYCGRG 4 cut(s) 471, 488, 760, 1008
Bsp120I GGGCCC 5 cut(s) 468, 557, 702, 828, 968
Bsp1286I GDGCHC 8 cut(s) 300, 433, 472, 561, 706, 832, 972, 1009
Bsp143I GATC 2 cut(s) 34, 878
BspACI CCGC 3 cut(s) 245, 466, 977
BspCNI CTCAG 1 cut(s) 390
BspFNI CGCG 4 cut(s) 346, 348, 621, 805
BspPI GGATC 2 cut(s) 873, 886
BspTI CTTAAG 1 cut(s) 562
BsrBI CCGCTC 1 cut(s) 466
BsrFI RCCGGY 1 cut(s) 813
BsrI ACTGG 2 cut(s) 307, 906
BssAI RCCGGY 1 cut(s) 813
BssHII GCGCGC 1 cut(s) 344
BssMI GATC 2 cut(s) 34, 878
BssNI GRCGYC 2 cut(s) 552, 823
BssSI CACGAG 3 cut(s) 281, 387, 660
Bst2BI CACGAG 3 cut(s) 281, 387, 660
Bst2UI CCWGG 4 cut(s) 528, 743, 799, 869
Bst4CI ACNGT 5 cut(s) 413, 457, 686, 730, 996
Bst6I CTCTTC 1 cut(s) 233
BstACI GRCGYC 2 cut(s) 552, 823
BstAFI CTTAAG 1 cut(s) 562
BstC8I GCNNGC 4 cut(s) 346, 468, 619, 815
BstDEI CTNAG 3 cut(s) 45, 377, 834
BstF5I GGATG 5 cut(s) 269, 276, 503, 581, 854
BstFNI CGCG 4 cut(s) 346, 348, 621, 805
BstHHI GCGC 4 cut(s) 346, 348, 534, 805
BstKTI GATC 2 cut(s) 37, 881
BstMBI GATC 2 cut(s) 34, 878
BstMWI GCNNNNNNNGC 1 cut(s) 343
BstNI CCWGG 4 cut(s) 528, 743, 799, 869
BstNSI RCATGY 1 cut(s) 538
BstSFI CTRYAG 1 cut(s) 992
BstSLI GKGCMC 5 cut(s) 472, 561, 706, 832, 972
BstUI CGCG 4 cut(s) 346, 348, 621, 805
BstV2I GAAGAC 1 cut(s) 77
BstX2I RGATCY 1 cut(s) 878
BstXI CCANNNNNNTGG 1 cut(s) 875
BstYI RGATCY 1 cut(s) 878
Bsu36I CCTNAGG 1 cut(s) 834
BtsCI GGATG 5 cut(s) 269, 276, 503, 581, 854
BtsIMutI CAGTG 3 cut(s) 300, 899, 1001
Cac8I GCNNGC 4 cut(s) 346, 468, 619, 815
CfoI GCGC 4 cut(s) 346, 348, 534, 805
Cfr10I RCCGGY 1 cut(s) 813
Cfr9I CCCGGG 4 cut(s) 471, 488, 760, 1008
Csp6I GTAC 2 cut(s) 723, 989
CviAII CATG 1 cut(s) 535
CviQI GTAC 2 cut(s) 723, 989
DdeI CTNAG 3 cut(s) 45, 377, 834
DpnI GATC 2 cut(s) 36, 880
DpnII GATC 2 cut(s) 34, 878
DraIII CACNNNGTG 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 696
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
Ecl136II GAGCTC 1 cut(s) 298
Eco147I AGGCCT 2 cut(s) 287, 600
Eco24I GRGCYC 8 cut(s) 300, 433, 472, 561, 706, 832, 972, 1009
Eco53kI GAGCTC 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 1012
Eco81I CCTNAGG 1 cut(s) 834
Eco88I CYCGRG 4 cut(s) 471, 488, 760, 1008
EcoICRI GAGCTC 1 cut(s) 298
EcoO109I RGGNCCY 3 cut(s) 558, 702, 829
EcoRII CCWGG 4 cut(s) 526, 741, 797, 867
EcoT38I GRGCYC 8 cut(s) 300, 433, 472, 561, 706, 832, 972, 1009
FaeI CATG 1 cut(s) 538
FaqI GGGAC 1 cut(s) 621
FatI CATG 1 cut(s) 534
FauI CCCGC 1 cut(s) 459
Fnu4HI GCNGC 1 cut(s) 245
FokI GGATG 5 cut(s) 256, 263, 510, 568, 841
FriOI GRGCYC 8 cut(s) 300, 433, 472, 561, 706, 832, 972, 1009
Fsp4HI GCNGC 1 cut(s) 245
FspBI CTAG 3 cut(s) 32, 650, 939
GlaI GCGC 4 cut(s) 345, 347, 533, 804
GluI GCNGC 1 cut(s) 245
HapII CCGG 7 cut(s) 472, 489, 494, 699, 761, 814, 1009
HhaI GCGC 4 cut(s) 346, 348, 534, 805
Hin1I GRCGYC 2 cut(s) 552, 823
Hin1II CATG 1 cut(s) 538
Hin6I GCGC 4 cut(s) 344, 346, 532, 803
HinP1I GCGC 4 cut(s) 344, 346, 532, 803
HinfI GANTC 2 cut(s) 734, 1000
HpaII CCGG 7 cut(s) 472, 489, 494, 699, 761, 814, 1009
Hpy166II GTNNAC 1 cut(s) 887
Hpy188I TCNGA 6 cut(s) 328, 380, 428, 517, 596, 927
Hpy188III TCNNGA 2 cut(s) 952, 1091
Hpy8I GTNNAC 1 cut(s) 887
Hpy99I CGWCG 2 cut(s) 557, 828
HpyAV CCTTC 1 cut(s) 261
HpyCH4III ACNGT 5 cut(s) 413, 457, 686, 730, 996
HpyCH4IV ACGT 4 cut(s) 552, 823, 1059, 1103
HpyCH4V TGCA 3 cut(s) 131, 182, 617
HpyF10VI GCNNNNNNNGC 1 cut(s) 343
HpyF3I CTNAG 3 cut(s) 45, 377, 834
HpySE526I ACGT 4 cut(s) 552, 823, 1059, 1103
Hsp92I GRCGYC 2 cut(s) 552, 823
Hsp92II CATG 1 cut(s) 538
HspAI GCGC 4 cut(s) 344, 346, 532, 803
KroI GCCGGC 1 cut(s) 813
KroNI GCCGGC 1 cut(s) 815
Kzo9I GATC 2 cut(s) 34, 878
LmnI GCTCC 3 cut(s) 295, 428, 463
MaeI CTAG 3 cut(s) 32, 650, 939
MaeII ACGT 4 cut(s) 552, 823, 1059, 1103
MaeIII GTNAC 6 cut(s) 265, 500, 577, 641, 772, 1060
MalI GATC 2 cut(s) 36, 880
MbiI CCGCTC 1 cut(s) 466
MboI GATC 2 cut(s) 34, 878
MboII GAAGA 5 cut(s) 77, 103, 220, 1018, 1075
MflI RGATCY 1 cut(s) 878
MhlI GDGCHC 8 cut(s) 300, 433, 472, 561, 706, 832, 972, 1009
MluCI AATT 8 cut(s) 11, 91, 103, 163, 505, 777, 933, 1034
MlyI GAGTC 2 cut(s) 743, 1009
MmeI TCCRAC 1 cut(s) 406
MnlI CCTC 8 cut(s) 277, 409, 541, 590, 682, 749, 812, 948
MroNI GCCGGC 1 cut(s) 813
MseI TTAA 7 cut(s) 102, 162, 173, 333, 563, 932, 1108
MspCI CTTAAG 1 cut(s) 562
MspI CCGG 7 cut(s) 472, 489, 494, 699, 761, 814, 1009
MvaI CCWGG 4 cut(s) 528, 743, 799, 869
MvnI CGCG 4 cut(s) 346, 348, 621, 805
MwoI GCNNNNNNNGC 1 cut(s) 343
NaeI GCCGGC 1 cut(s) 815
NdeII GATC 2 cut(s) 34, 878
NgoMIV GCCGGC 1 cut(s) 813
NlaIII CATG 1 cut(s) 538
NmeAIII GCCGAG 1 cut(s) 791
NmuCI GTSAC 3 cut(s) 500, 641, 772
NspI RCATGY 1 cut(s) 538
PasI CCCWGGG 1 cut(s) 527
PauI GCGCGC 1 cut(s) 344
PceI AGGCCT 2 cut(s) 287, 600
PcsI WCGNNNNNNNCGW 2 cut(s) 734, 1056
PdiI GCCGGC 1 cut(s) 815
PkrI GCNGC 1 cut(s) 246
PleI GAGTC 2 cut(s) 742, 1008
PpsI GAGTC 2 cut(s) 742, 1008
PsiI TTATAA 1 cut(s) 851
Psp124BI GAGCTC 1 cut(s) 300
Psp6I CCWGG 4 cut(s) 526, 741, 797, 867
PspGI CCWGG 4 cut(s) 526, 741, 797, 867
PspOMI GGGCCC 5 cut(s) 468, 557, 702, 828, 968
PsuI RGATCY 1 cut(s) 878
PteI GCGCGC 1 cut(s) 344
RsaI GTAC 2 cut(s) 724, 990
RsaNI GTAC 2 cut(s) 723, 989
SacI GAGCTC 1 cut(s) 300
SaqAI TTAA 7 cut(s) 102, 162, 173, 333, 563, 932, 1108
SatI GCNGC 1 cut(s) 245
Sau3AI GATC 2 cut(s) 34, 878
SchI GAGTC 2 cut(s) 743, 1009
SduI GDGCHC 8 cut(s) 300, 433, 472, 561, 706, 832, 972, 1009
SetI ASST 9 cut(s) 171, 300, 555, 648, 800, 826, 892, 1062, 1106
SfcI CTRYAG 1 cut(s) 992
SmaI CCCGGG 4 cut(s) 473, 490, 762, 1010
SmlI CTYRAG 1 cut(s) 562
SmoI CTYRAG 1 cut(s) 562
SrfI GCCCGGGC 1 cut(s) 762
Sse9I AATT 8 cut(s) 11, 91, 103, 163, 505, 777, 933, 1034
SseBI AGGCCT 2 cut(s) 287, 600
SsiI CCGC 3 cut(s) 245, 466, 977
SspI AATATT 2 cut(s) 446, 719
SspMI CTAG 3 cut(s) 32, 650, 939
SstI GAGCTC 1 cut(s) 300
StuI AGGCCT 2 cut(s) 287, 600
TaaI ACNGT 5 cut(s) 413, 457, 686, 730, 996
TaiI ACGT 4 cut(s) 555, 826, 1062, 1106
TaqI TCGA 3 cut(s) 737, 754, 1003
TasI AATT 8 cut(s) 11, 91, 103, 163, 505, 777, 933, 1034
TatI WGTACW 1 cut(s) 722
TauI GCSGC 1 cut(s) 247
Tru1I TTAA 7 cut(s) 102, 162, 173, 333, 563, 932, 1108
Tru9I TTAA 7 cut(s) 102, 162, 173, 333, 563, 932, 1108
TscAI CASTG 3 cut(s) 307, 906, 1001
TseFI GTSAC 3 cut(s) 500, 641, 772
Tsp45I GTSAC 3 cut(s) 500, 641, 772
TspGWI ACGGA 1 cut(s) 726
TspMI CCCGGG 4 cut(s) 471, 488, 760, 1008
TspRI CASTG 3 cut(s) 307, 906, 1001
Vha464I CTTAAG 1 cut(s) 562
XapI RAATTY 1 cut(s) 11
XceI RCATGY 1 cut(s) 538
XmaI CCCGGG 4 cut(s) 471, 488, 760, 1008
XspI CTAG 3 cut(s) 32, 650, 939
ZraI GACGTC 2 cut(s) 553, 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.