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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 151 |
| AciI | CCGC | 3 cut(s) | 131, 149, 186 |
| AclI | AACGTT | 2 cut(s) | 547, 1076 |
| AclWI | GGATC | 1 cut(s) | 141 |
| AcsI | RAATTY | 7 cut(s) | 61, 452, 538, 554, 578, 1058, 1134 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 126, 127, 261 |
| AflIII | ACRYGT | 2 cut(s) | 411, 596 |
| AgsI | TTSAA | 8 cut(s) | 58, 88, 538, 543, 554, 781, 980, 1005 |
| AjiI | CACGTC | 1 cut(s) | 414 |
| AjnI | CCWGG | 4 cut(s) | 70, 142, 381, 924 |
| AluBI | AGCT | 3 cut(s) | 108, 325, 693 |
| AluI | AGCT | 3 cut(s) | 108, 325, 693 |
| Alw21I | GWGCWC | 1 cut(s) | 327 |
| Alw26I | GTCTC | 1 cut(s) | 959 |
| AlwI | GGATC | 1 cut(s) | 141 |
| Ama87I | CYCGRG | 1 cut(s) | 125 |
| AoxI | GGCC | 3 cut(s) | 122, 145, 334 |
| ApeKI | GCWGC | 1 cut(s) | 1032 |
| ApoI | RAATTY | 7 cut(s) | 61, 452, 538, 554, 578, 1058, 1134 |
| AseI | ATTAAT | 1 cut(s) | 33 |
| AspS9I | GGNCC | 2 cut(s) | 123, 146 |
| AsuC2I | CCSGG | 3 cut(s) | 121, 126, 127 |
| AsuHPI | GGTGA | 1 cut(s) | 244 |
| AsuII | TTCGAA | 1 cut(s) | 583 |
| AvaI | CYCGRG | 1 cut(s) | 125 |
| BanII | GRGCYC | 1 cut(s) | 327 |
| BauI | CACGAG | 2 cut(s) | 231, 338 |
| Bbv12I | GWGCWC | 1 cut(s) | 327 |
| BbvI | GCAGC | 1 cut(s) | 1019 |
| BccI | CCATC | 4 cut(s) | 264, 347, 681, 981 |
| BciT130I | CCWGG | 4 cut(s) | 72, 144, 383, 926 |
| BcnI | CCSGG | 3 cut(s) | 121, 126, 127 |
| BcoDI | GTCTC | 1 cut(s) | 959 |
| BfaI | CTAG | 5 cut(s) | 272, 344, 407, 801, 855 |
| BglII | AGATCT | 1 cut(s) | 886 |
| BisI | GCNGC | 1 cut(s) | 1033 |
| BlsI | GCNGC | 1 cut(s) | 1034 |
| Bme1390I | CCNGG | 7 cut(s) | 72, 121, 126, 127, 144, 383, 926 |
| BmeT110I | CYCGRG | 1 cut(s) | 125 |
| BmgBI | CACGTC | 1 cut(s) | 414 |
| BmgT120I | GGNCC | 2 cut(s) | 123, 146 |
| BmiI | GGNNCC | 1 cut(s) | 309 |
| BmrFI | CCNGG | 7 cut(s) | 72, 121, 126, 127, 144, 383, 926 |
| BmrI | ACTGGG | 1 cut(s) | 238 |
| BmuI | ACTGGG | 1 cut(s) | 238 |
| Bpu14I | TTCGAA | 1 cut(s) | 583 |
| BpuMI | CCSGG | 3 cut(s) | 121, 126, 127 |
| BsaI | GGTCTC | 1 cut(s) | 959 |
| BsaJI | CCNNGG | 5 cut(s) | 125, 126, 142, 381, 382 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 126, 127, 261 |
| Bse1I | ACTGG | 2 cut(s) | 244, 318 |
| BseBI | CCWGG | 4 cut(s) | 72, 144, 383, 926 |
| BseDI | CCNNGG | 5 cut(s) | 125, 126, 142, 381, 382 |
| BseGI | GGATG | 4 cut(s) | 116, 358, 401, 1046 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 126, 127, 261 |
| BseNI | ACTGG | 2 cut(s) | 244, 318 |
| BseXI | GCAGC | 1 cut(s) | 1019 |
| BshFI | GGCC | 3 cut(s) | 124, 147, 336 |
| BsiHKAI | GWGCWC | 1 cut(s) | 327 |
| BsiHKCI | CYCGRG | 1 cut(s) | 125 |
| BsiSI | CCGG | 2 cut(s) | 121, 126 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 126, 127, 261 |
| BsmAI | GTCTC | 1 cut(s) | 959 |
| BsmI | GAATGC | 1 cut(s) | 986 |
| BsnI | GGCC | 3 cut(s) | 124, 147, 336 |
| Bso31I | GGTCTC | 1 cut(s) | 959 |
| BsoBI | CYCGRG | 1 cut(s) | 125 |
| Bsp119I | TTCGAA | 1 cut(s) | 583 |
| Bsp1286I | GDGCHC | 1 cut(s) | 327 |
| Bsp143I | GATC | 2 cut(s) | 133, 886 |
| BspACI | CCGC | 3 cut(s) | 131, 149, 186 |
| BspANI | GGCC | 3 cut(s) | 124, 147, 336 |
| BspLI | GGNNCC | 1 cut(s) | 309 |
| BspPI | GGATC | 1 cut(s) | 141 |
| BspT104I | TTCGAA | 1 cut(s) | 583 |
| BspTNI | GGTCTC | 1 cut(s) | 959 |
| BsrBI | CCGCTC | 1 cut(s) | 151 |
| BsrI | ACTGG | 2 cut(s) | 244, 318 |
| BssECI | CCNNGG | 5 cut(s) | 125, 126, 142, 381, 382 |
| BssMI | GATC | 2 cut(s) | 133, 886 |
| BssSI | CACGAG | 2 cut(s) | 231, 338 |
| Bst2BI | CACGAG | 2 cut(s) | 231, 338 |
| Bst2UI | CCWGG | 4 cut(s) | 72, 144, 383, 926 |
| Bst4CI | ACNGT | 2 cut(s) | 170, 212 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1029 |
| BstBI | TTCGAA | 1 cut(s) | 583 |
| BstC8I | GCNNGC | 1 cut(s) | 149 |
| BstDEI | CTNAG | 2 cut(s) | 683, 694 |
| BstEII | GGTNACC | 1 cut(s) | 250 |
| BstF5I | GGATG | 4 cut(s) | 116, 358, 401, 1046 |
| BstKTI | GATC | 2 cut(s) | 136, 889 |
| BstMAI | GTCTC | 1 cut(s) | 959 |
| BstMBI | GATC | 2 cut(s) | 133, 886 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1029 |
| BstNI | CCWGG | 4 cut(s) | 72, 144, 383, 926 |
| BstNSI | RCATGY | 2 cut(s) | 406, 1032 |
| BstPI | GGTNACC | 1 cut(s) | 250 |
| BstSCI | CCNGG | 7 cut(s) | 70, 119, 124, 125, 142, 381, 924 |
| BstV1I | GCAGC | 1 cut(s) | 1019 |
| BstX2I | RGATCY | 1 cut(s) | 886 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 916 |
| BstYI | RGATCY | 1 cut(s) | 886 |
| BsuRI | GGCC | 3 cut(s) | 124, 147, 336 |
| BtgZI | GCGATG | 1 cut(s) | 402 |
| BtrI | CACGTC | 1 cut(s) | 414 |
| BtsCI | GGATG | 4 cut(s) | 116, 358, 401, 1046 |
| BtsIMutI | CAGTG | 2 cut(s) | 251, 325 |
| Cac8I | GCNNGC | 1 cut(s) | 149 |
| Cfr13I | GGNCC | 2 cut(s) | 123, 146 |
| Cfr9I | CCCGGG | 1 cut(s) | 125 |
| CseI | GACGC | 1 cut(s) | 665 |
| CsiI | ACCWGGT | 1 cut(s) | 70 |
| CviAII | CATG | 3 cut(s) | 260, 403, 1029 |
| DdeI | CTNAG | 2 cut(s) | 683, 694 |
| DpnI | GATC | 2 cut(s) | 135, 888 |
| DpnII | GATC | 2 cut(s) | 133, 886 |
| EciI | GGCGGA | 1 cut(s) | 146 |
| Ecl136II | GAGCTC | 1 cut(s) | 325 |
| Eco147I | AGGCCT | 1 cut(s) | 336 |
| Eco24I | GRGCYC | 1 cut(s) | 327 |
| Eco31I | GGTCTC | 1 cut(s) | 959 |
| Eco32I | GATATC | 1 cut(s) | 931 |
| Eco53kI | GAGCTC | 1 cut(s) | 325 |
| Eco88I | CYCGRG | 1 cut(s) | 125 |
| Eco91I | GGTNACC | 1 cut(s) | 250 |
| EcoICRI | GAGCTC | 1 cut(s) | 325 |
| EcoO65I | GGTNACC | 1 cut(s) | 250 |
| EcoRI | GAATTC | 1 cut(s) | 538 |
| EcoRII | CCWGG | 4 cut(s) | 70, 142, 381, 924 |
| EcoRV | GATATC | 1 cut(s) | 931 |
| EcoT38I | GRGCYC | 1 cut(s) | 327 |
| FaeI | CATG | 3 cut(s) | 263, 406, 1032 |
| FatI | CATG | 3 cut(s) | 259, 402, 1028 |
| FauI | CCCGC | 1 cut(s) | 156 |
| Fnu4HI | GCNGC | 1 cut(s) | 1033 |
| FokI | GGATG | 4 cut(s) | 103, 365, 408, 1033 |
| FriOI | GRGCYC | 1 cut(s) | 327 |
| Fsp4HI | GCNGC | 1 cut(s) | 1033 |
| FspBI | CTAG | 5 cut(s) | 272, 344, 407, 801, 855 |
| GluI | GCNGC | 1 cut(s) | 1033 |
| HaeIII | GGCC | 3 cut(s) | 124, 147, 336 |
| HapII | CCGG | 2 cut(s) | 121, 126 |
| HgaI | GACGC | 1 cut(s) | 665 |
| Hin1II | CATG | 3 cut(s) | 263, 406, 1032 |
| HinfI | GANTC | 2 cut(s) | 54, 634 |
| HpaII | CCGG | 2 cut(s) | 121, 126 |
| HphI | GGTGA | 1 cut(s) | 244 |
| Hpy188I | TCNGA | 3 cut(s) | 296, 639, 1088 |
| Hpy188III | TCNNGA | 6 cut(s) | 51, 231, 666, 934, 956, 977 |
| HpyAV | CCTTC | 3 cut(s) | 289, 845, 944 |
| HpyCH4III | ACNGT | 2 cut(s) | 170, 212 |
| HpyCH4IV | ACGT | 5 cut(s) | 413, 547, 598, 911, 1076 |
| HpyCH4V | TGCA | 2 cut(s) | 77, 947 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1029 |
| HpyF3I | CTNAG | 2 cut(s) | 683, 694 |
| HpySE526I | ACGT | 5 cut(s) | 413, 547, 598, 911, 1076 |
| Hsp92II | CATG | 3 cut(s) | 263, 406, 1032 |
| Kzo9I | GATC | 2 cut(s) | 133, 886 |
| LmnI | GCTCC | 3 cut(s) | 156, 330, 690 |
| Lsp1109I | GCAGC | 1 cut(s) | 1019 |
| MabI | ACCWGGT | 1 cut(s) | 70 |
| MaeI | CTAG | 5 cut(s) | 272, 344, 407, 801, 855 |
| MaeII | ACGT | 5 cut(s) | 413, 547, 598, 911, 1076 |
| MaeIII | GTNAC | 5 cut(s) | 112, 250, 398, 435, 599 |
| MalI | GATC | 2 cut(s) | 135, 888 |
| MbiI | CCGCTC | 1 cut(s) | 151 |
| MboI | GATC | 2 cut(s) | 133, 886 |
| MflI | RGATCY | 1 cut(s) | 886 |
| MhlI | GDGCHC | 1 cut(s) | 327 |
| MnlI | CCTC | 5 cut(s) | 286, 347, 613, 840, 1082 |
| MseI | TTAA | 9 cut(s) | 33, 288, 368, 575, 648, 755, 843, 1040, 1110 |
| MspI | CCGG | 2 cut(s) | 121, 126 |
| MspR9I | CCNGG | 7 cut(s) | 72, 121, 126, 127, 144, 383, 926 |
| Mva1269I | GAATGC | 1 cut(s) | 986 |
| MvaI | CCWGG | 4 cut(s) | 72, 144, 383, 926 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1029 |
| NciI | CCSGG | 3 cut(s) | 121, 126, 127 |
| NdeII | GATC | 2 cut(s) | 133, 886 |
| NlaIII | CATG | 3 cut(s) | 263, 406, 1032 |
| NlaIV | GGNNCC | 1 cut(s) | 309 |
| NmuCI | GTSAC | 3 cut(s) | 112, 250, 398 |
| NspI | RCATGY | 2 cut(s) | 406, 1032 |
| NspV | TTCGAA | 1 cut(s) | 583 |
| PasI | CCCWGGG | 1 cut(s) | 382 |
| PceI | AGGCCT | 1 cut(s) | 336 |
| PctI | GAATGC | 1 cut(s) | 986 |
| PfeI | GAWTC | 2 cut(s) | 54, 634 |
| PfoI | TCCNGGA | 1 cut(s) | 924 |
| PkrI | GCNGC | 1 cut(s) | 1034 |
| PshBI | ATTAAT | 1 cut(s) | 33 |
| Psp124BI | GAGCTC | 1 cut(s) | 327 |
| Psp1406I | AACGTT | 2 cut(s) | 547, 1076 |
| Psp6I | CCWGG | 4 cut(s) | 70, 142, 381, 924 |
| PspEI | GGTNACC | 1 cut(s) | 250 |
| PspGI | CCWGG | 4 cut(s) | 70, 142, 381, 924 |
| PspN4I | GGNNCC | 1 cut(s) | 309 |
| PspPI | GGNCC | 2 cut(s) | 123, 146 |
| PsuI | RGATCY | 1 cut(s) | 886 |
| SacI | GAGCTC | 1 cut(s) | 327 |
| SaqAI | TTAA | 9 cut(s) | 33, 288, 368, 575, 648, 755, 843, 1040, 1110 |
| SatI | GCNGC | 1 cut(s) | 1033 |
| Sau3AI | GATC | 2 cut(s) | 133, 886 |
| Sau96I | GGNCC | 2 cut(s) | 123, 146 |
| ScrFI | CCNGG | 7 cut(s) | 72, 121, 126, 127, 144, 383, 926 |
| SduI | GDGCHC | 1 cut(s) | 327 |
| SexAI | ACCWGGT | 1 cut(s) | 70 |
| SfuI | TTCGAA | 1 cut(s) | 583 |
| SmaI | CCCGGG | 1 cut(s) | 127 |
| SseBI | AGGCCT | 1 cut(s) | 336 |
| SsiI | CCGC | 3 cut(s) | 131, 149, 186 |
| SspI | AATATT | 1 cut(s) | 646 |
| SspMI | CTAG | 5 cut(s) | 272, 344, 407, 801, 855 |
| SstI | GAGCTC | 1 cut(s) | 327 |
| StuI | AGGCCT | 1 cut(s) | 336 |
| StyD4I | CCNGG | 7 cut(s) | 70, 119, 124, 125, 142, 381, 924 |
| TaaI | ACNGT | 2 cut(s) | 170, 212 |
| TaiI | ACGT | 5 cut(s) | 416, 550, 601, 914, 1079 |
| TaqI | TCGA | 3 cut(s) | 583, 667, 957 |
| TfiI | GAWTC | 2 cut(s) | 54, 634 |
| Tru1I | TTAA | 9 cut(s) | 33, 288, 368, 575, 648, 755, 843, 1040, 1110 |
| Tru9I | TTAA | 9 cut(s) | 33, 288, 368, 575, 648, 755, 843, 1040, 1110 |
| TscAI | CASTG | 2 cut(s) | 251, 325 |
| TseFI | GTSAC | 3 cut(s) | 112, 250, 398 |
| TseI | GCWGC | 1 cut(s) | 1032 |
| Tsp45I | GTSAC | 3 cut(s) | 112, 250, 398 |
| TspDTI | ATGAA | 3 cut(s) | 17, 446, 1035 |
| TspGWI | ACGGA | 1 cut(s) | 320 |
| TspMI | CCCGGG | 1 cut(s) | 125 |
| TspRI | CASTG | 2 cut(s) | 251, 325 |
| VspI | ATTAAT | 1 cut(s) | 33 |
| XapI | RAATTY | 7 cut(s) | 61, 452, 538, 554, 578, 1058, 1134 |
| XceI | RCATGY | 2 cut(s) | 406, 1032 |
| XmaI | CCCGGG | 1 cut(s) | 125 |
| XspI | CTAG | 5 cut(s) | 272, 344, 407, 801, 855 |