pycom11g02850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000158
Physical Location & Seq
Forward (+)
2240246 .. 2240500
255 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g02850.1

Sequence Viewer

Length: 255 bp
ATGTCACATCCCGACCCGAGCAGGACCACTTCCCAGCCCCGACTCCACCGTAACACGATATTGTCCGCTTTGGGCCCCCAGCACACCCTCACGGTTTTGTTTCTGGGAACTCACATGAGAACTTCCCAGTGGGTCACCTATCATGGGAATGCTCTCACGCGCTACTCGCTTAACTTCGGAGTTCCGATGGAACCCGAAGCTAGTGAGCTTCCAAAAGGGCTCGTGCTAGGTAGAGATGGGAATATATACATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.38

Weight (kDa)

9.51

Isoelectric Point (pI)

34.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 160
AciI CCGC 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 144
AluBI AGCT 2 cut(s) 200, 208
AluI AGCT 2 cut(s) 200, 208
Ama87I CYCGRG 1 cut(s) 16
AoxI GGCC 1 cut(s) 73
ApaI GGGCCC 1 cut(s) 77
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 3 cut(s) 24, 73, 74
AsuHPI GGTGA 1 cut(s) 127
AvaI CYCGRG 1 cut(s) 16
AvaII GGWCC 1 cut(s) 24
BaeGI GKGCMC 1 cut(s) 77
BanII GRGCYC 2 cut(s) 77, 222
BauI CACGAG 1 cut(s) 221
BccI CCATC 2 cut(s) 181, 230
BfaI CTAG 2 cut(s) 201, 227
Bme18I GGWCC 1 cut(s) 24
BmeT110I CYCGRG 1 cut(s) 16
BmgT120I GGNCC 3 cut(s) 24, 73, 74
BmiI GGNNCC 3 cut(s) 75, 76, 192
BmrI ACTGGG 1 cut(s) 121
BmuI ACTGGG 1 cut(s) 121
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 7
BseLI CCNNNNNNNGG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 127
BseSI GKGCMC 1 cut(s) 77
BseYI CCCAGC 2 cut(s) 33, 78
Bsh1236I CGCG 1 cut(s) 160
BshFI GGCC 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 144
BsmI GAATGC 1 cut(s) 154
BsnI GGCC 1 cut(s) 75
BsoBI CYCGRG 1 cut(s) 16
Bsp120I GGGCCC 1 cut(s) 73
Bsp1286I GDGCHC 2 cut(s) 77, 222
BspACI CCGC 1 cut(s) 66
BspANI GGCC 1 cut(s) 75
BspFNI CGCG 1 cut(s) 160
BspLI GGNNCC 3 cut(s) 75, 76, 192
BsrI ACTGG 1 cut(s) 127
BssSI CACGAG 1 cut(s) 221
Bst2BI CACGAG 1 cut(s) 221
Bst4CI ACNGT 2 cut(s) 50, 94
BstEII GGTNACC 1 cut(s) 133
BstF5I GGATG 1 cut(s) 7
BstFNI CGCG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 162
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstPI GGTNACC 1 cut(s) 133
BstSLI GKGCMC 1 cut(s) 77
BstUI CGCG 1 cut(s) 160
BsuRI GGCC 1 cut(s) 75
BtsCI GGATG 1 cut(s) 7
BtsIMutI CAGTG 1 cut(s) 134
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 3 cut(s) 24, 73, 74
CviAII CATG 2 cut(s) 115, 143
CviJI RGCY 5 cut(s) 37, 75, 200, 208, 220
CviKI_1 RGCY 5 cut(s) 37, 75, 200, 208, 220
Eco24I GRGCYC 2 cut(s) 77, 222
Eco47I GGWCC 1 cut(s) 24
Eco88I CYCGRG 1 cut(s) 16
Eco91I GGTNACC 1 cut(s) 133
EcoO109I RGGNCCY 1 cut(s) 74
EcoO65I GGTNACC 1 cut(s) 133
EcoT38I GRGCYC 2 cut(s) 77, 222
FaeI CATG 2 cut(s) 118, 146
FaiI YATR 6 cut(s) 116, 144, 245, 247, 251, 253
FatI CATG 2 cut(s) 114, 142
FriOI GRGCYC 2 cut(s) 77, 222
FspBI CTAG 2 cut(s) 201, 227
GlaI GCGC 1 cut(s) 161
GsaI CCCAGC 2 cut(s) 37, 82
HaeIII GGCC 1 cut(s) 75
HhaI GCGC 1 cut(s) 162
Hin1II CATG 2 cut(s) 118, 146
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HinfI GANTC 1 cut(s) 42
HphI GGTGA 1 cut(s) 127
Hpy188I TCNGA 2 cut(s) 179, 186
Hpy188III TCNNGA 1 cut(s) 11
HpyCH4III ACNGT 2 cut(s) 50, 94
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
Hsp92II CATG 2 cut(s) 118, 146
HspAI GCGC 1 cut(s) 160
LpnPI CCDG 5 cut(s) 7, 47, 89, 92, 140
MaeI CTAG 2 cut(s) 201, 227
MaeIII GTNAC 3 cut(s) 3, 50, 133
MhlI GDGCHC 2 cut(s) 77, 222
MlyI GAGTC 1 cut(s) 36
MnlI CCTC 1 cut(s) 98
MseI TTAA 1 cut(s) 171
MslI CAYNNNNRTG 1 cut(s) 147
Mva1269I GAATGC 1 cut(s) 154
MvnI CGCG 1 cut(s) 160
MwoI GCNNNNNNNGC 1 cut(s) 166
NlaIII CATG 2 cut(s) 118, 146
NlaIV GGNNCC 3 cut(s) 75, 76, 192
NmuCI GTSAC 2 cut(s) 3, 133
PctI GAATGC 1 cut(s) 154
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
PspEI GGTNACC 1 cut(s) 133
PspFI CCCAGC 2 cut(s) 33, 78
PspN4I GGNNCC 3 cut(s) 75, 76, 192
PspOMI GGGCCC 1 cut(s) 73
PspPI GGNCC 3 cut(s) 24, 73, 74
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 1 cut(s) 171
Sau96I GGNCC 3 cut(s) 24, 73, 74
SchI GAGTC 1 cut(s) 36
SduI GDGCHC 2 cut(s) 77, 222
SetI ASST 4 cut(s) 140, 202, 210, 232
SinI GGWCC 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 147
SsiI CCGC 1 cut(s) 66
SspMI CTAG 2 cut(s) 201, 227
TaaI ACNGT 2 cut(s) 50, 94
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 1 cut(s) 134
TseFI GTSAC 2 cut(s) 3, 133
Tsp45I GTSAC 2 cut(s) 3, 133
TspRI CASTG 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 24
XspI CTAG 2 cut(s) 201, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.