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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2362 |
| Acc65I | GGTACC | 1 cut(s) | 224 |
| AccB1I | GGYRCC | 1 cut(s) | 224 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2439 |
| AccBSI | CCGCTC | 3 cut(s) | 876, 1657, 1965 |
| AccI | GTMKAC | 2 cut(s) | 19, 2354 |
| AccII | CGCG | 1 cut(s) | 2842 |
| AclI | AACGTT | 1 cut(s) | 259 |
| AclWI | GGATC | 6 cut(s) | 534, 2424, 2450, 2488, 2549, 2594 |
| AcoI | YGGCCR | 6 cut(s) | 922, 967, 1373, 1449, 1966, 2679 |
| AcsI | RAATTY | 8 cut(s) | 60, 207, 315, 1639, 2291, 2459, 2542, 2834 |
| AcuI | CTGAAG | 2 cut(s) | 1150, 1316 |
| AcyI | GRCGYC | 1 cut(s) | 1794 |
| AdeI | CACNNNGTG | 1 cut(s) | 1960 |
| AfaI | GTAC | 7 cut(s) | 226, 847, 1700, 2058, 2075, 2122, 2528 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 812, 1780, 2112, 2130, 2439, 2564, 2743, 2744, 2990 |
| AflIII | ACRYGT | 1 cut(s) | 9 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2332 |
| AjnI | CCWGG | 1 cut(s) | 2000 |
| AleI | CACNNNNGTG | 1 cut(s) | 147 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2383, 2415 |
| Alw21I | GWGCWC | 2 cut(s) | 1408, 2959 |
| Alw26I | GTCTC | 3 cut(s) | 344, 1234, 2787 |
| Alw44I | GTGCAC | 1 cut(s) | 1404 |
| AlwI | GGATC | 6 cut(s) | 534, 2424, 2450, 2488, 2549, 2594 |
| Ama87I | CYCGRG | 2 cut(s) | 2863, 2880 |
| ApaI | GGGCCC | 1 cut(s) | 787 |
| ApaLI | GTGCAC | 1 cut(s) | 1404 |
| ApeKI | GCWGC | 6 cut(s) | 1001, 1321, 1720, 1778, 1892, 1904 |
| ApoI | RAATTY | 8 cut(s) | 60, 207, 315, 1639, 2291, 2459, 2542, 2834 |
| AseI | ATTAAT | 2 cut(s) | 356, 1505 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2093, 2875 |
| Asp718I | GGTACC | 1 cut(s) | 224 |
| AspA2I | CCTAGG | 1 cut(s) | 950 |
| AspLEI | GCGC | 3 cut(s) | 1522, 1806, 2842 |
| AspS9I | GGNCC | 9 cut(s) | 478, 688, 783, 784, 803, 826, 2254, 2364, 2883 |
| AsuC2I | CCSGG | 6 cut(s) | 240, 2131, 2864, 2865, 2881, 2882 |
| AsuHPI | GGTGA | 9 cut(s) | 46, 1727, 1946, 2238, 2561, 2813, 2818, 2884, 2973 |
| AsuII | TTCGAA | 1 cut(s) | 1249 |
| AvaI | CYCGRG | 2 cut(s) | 2863, 2880 |
| AvaII | GGWCC | 3 cut(s) | 688, 2254, 2364 |
| AvrII | CCTAGG | 1 cut(s) | 950 |
| AxyI | CCTNAGG | 1 cut(s) | 2250 |
| BaeGI | GKGCMC | 2 cut(s) | 787, 1408 |
| BalI | TGGCCA | 1 cut(s) | 2681 |
| BanI | GGYRCC | 1 cut(s) | 224 |
| BanII | GRGCYC | 2 cut(s) | 787, 2959 |
| BauI | CACGAG | 1 cut(s) | 2960 |
| BbsI | GAAGAC | 2 cut(s) | 1322, 2086 |
| Bbv12I | GWGCWC | 2 cut(s) | 1408, 2959 |
| BbvI | GCAGC | 6 cut(s) | 988, 1333, 1707, 1765, 1904, 1916 |
| BccI | CCATC | 6 cut(s) | 215, 393, 1290, 1642, 1784, 2993 |
| BciT130I | CCWGG | 1 cut(s) | 2002 |
| BclI | TGATCA | 1 cut(s) | 1731 |
| BcnI | CCSGG | 6 cut(s) | 240, 2131, 2864, 2865, 2881, 2882 |
| BcoDI | GTCTC | 3 cut(s) | 344, 1234, 2787 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1287 |
| BglII | AGATCT | 2 cut(s) | 2394, 2646 |
| BlnI | CCTAGG | 1 cut(s) | 950 |
| BlpI | GCTNAGC | 1 cut(s) | 2045 |
| BmcAI | AGTACT | 1 cut(s) | 2058 |
| Bme1390I | CCNGG | 7 cut(s) | 240, 2002, 2131, 2864, 2865, 2881, 2882 |
| Bme18I | GGWCC | 3 cut(s) | 688, 2254, 2364 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2332 |
| BmeT110I | CYCGRG | 2 cut(s) | 2863, 2880 |
| BmgT120I | GGNCC | 9 cut(s) | 478, 688, 783, 784, 803, 826, 2254, 2364, 2883 |
| BmiI | GGNNCC | 3 cut(s) | 226, 785, 2365 |
| BmrFI | CCNGG | 7 cut(s) | 240, 2002, 2131, 2864, 2865, 2881, 2882 |
| BmrI | ACTGGG | 1 cut(s) | 1713 |
| BmsI | GCATC | 1 cut(s) | 2125 |
| BmuI | ACTGGG | 1 cut(s) | 1713 |
| BpiI | GAAGAC | 2 cut(s) | 1322, 2086 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1257, 1289 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2045 |
| Bpu14I | TTCGAA | 1 cut(s) | 1249 |
| BpuEI | CTTGAG | 1 cut(s) | 1105 |
| BpuMI | CCSGG | 6 cut(s) | 240, 2131, 2864, 2865, 2881, 2882 |
| Bsa29I | ATCGAT | 3 cut(s) | 557, 1824, 2428 |
| BsaAI | YACGTR | 1 cut(s) | 2378 |
| BsaHI | GRCGYC | 1 cut(s) | 1794 |
| BsaI | GGTCTC | 1 cut(s) | 344 |
| BsaJI | CCNNGG | 9 cut(s) | 238, 950, 1370, 1436, 1751, 2001, 2863, 2864, 2880 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 812, 1780, 2112, 2130, 2439, 2564, 2743, 2744, 2990 |
| Bse1I | ACTGG | 3 cut(s) | 1155, 1217, 1708 |
| Bse21I | CCTNAGG | 1 cut(s) | 2250 |
| BseBI | CCWGG | 1 cut(s) | 2002 |
| BseCI | ATCGAT | 3 cut(s) | 557, 1824, 2428 |
| BseDI | CCNNGG | 9 cut(s) | 238, 950, 1370, 1436, 1751, 2001, 2863, 2864, 2880 |
| BseGI | GGATG | 1 cut(s) | 1654 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 812, 1780, 2112, 2130, 2439, 2564, 2743, 2744, 2990 |
| BseMII | CTCAG | 6 cut(s) | 363, 891, 1245, 1526, 2241, 2301 |
| BseNI | ACTGG | 3 cut(s) | 1155, 1217, 1708 |
| BseRI | GAGGAG | 2 cut(s) | 970, 1425 |
| BseSI | GKGCMC | 2 cut(s) | 787, 1408 |
| BseXI | GCAGC | 6 cut(s) | 988, 1333, 1707, 1765, 1904, 1916 |
| BseYI | CCCAGC | 1 cut(s) | 1910 |
| Bsh1236I | CGCG | 1 cut(s) | 2842 |
| Bsh1285I | CGRYCG | 2 cut(s) | 891, 2565 |
| BshNI | GGYRCC | 1 cut(s) | 224 |
| BshVI | ATCGAT | 3 cut(s) | 557, 1824, 2428 |
| BsiEI | CGRYCG | 2 cut(s) | 891, 2565 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1408, 2959 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2863, 2880 |
| BsiSI | CCGG | 5 cut(s) | 240, 925, 2131, 2864, 2881 |
| BslFI | GGGAC | 3 cut(s) | 353, 2088, 2113 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 812, 1780, 2112, 2130, 2439, 2564, 2743, 2744, 2990 |
| BsmAI | GTCTC | 3 cut(s) | 344, 1234, 2787 |
| BsmBI | CGTCTC | 1 cut(s) | 2787 |
| BsmFI | GGGAC | 3 cut(s) | 353, 2088, 2113 |
| Bso31I | GGTCTC | 1 cut(s) | 344 |
| BsoBI | CYCGRG | 2 cut(s) | 2863, 2880 |
| Bsp119I | TTCGAA | 1 cut(s) | 1249 |
| Bsp120I | GGGCCC | 1 cut(s) | 783 |
| Bsp1286I | GDGCHC | 3 cut(s) | 787, 1408, 2959 |
| Bsp1407I | TGTACA | 1 cut(s) | 1698 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2045 |
| BspCNI | CTCAG | 6 cut(s) | 364, 890, 1244, 1525, 2242, 2300 |
| BspDI | ATCGAT | 3 cut(s) | 557, 1824, 2428 |
| BspFNI | CGCG | 1 cut(s) | 2842 |
| BspHI | TCATGA | 2 cut(s) | 406, 499 |
| BspLI | GGNNCC | 3 cut(s) | 226, 785, 2365 |
| BspPI | GGATC | 6 cut(s) | 534, 2424, 2450, 2488, 2549, 2594 |
| BspT104I | TTCGAA | 1 cut(s) | 1249 |
| BspT107I | GGYRCC | 1 cut(s) | 224 |
| BspTNI | GGTCTC | 1 cut(s) | 344 |
| BsrBI | CCGCTC | 3 cut(s) | 876, 1657, 1965 |
| BsrGI | TGTACA | 1 cut(s) | 1698 |
| BsrI | ACTGG | 3 cut(s) | 1155, 1217, 1708 |
| BssECI | CCNNGG | 9 cut(s) | 238, 950, 1370, 1436, 1751, 2001, 2863, 2864, 2880 |
| BssNAI | GTATAC | 1 cut(s) | 20 |
| BssNI | GRCGYC | 1 cut(s) | 1794 |
| BssSI | CACGAG | 1 cut(s) | 2960 |
| BssT1I | CCWWGG | 2 cut(s) | 950, 1751 |
| Bst1107I | GTATAC | 1 cut(s) | 20 |
| Bst2BI | CACGAG | 1 cut(s) | 2960 |
| Bst2UI | CCWGG | 1 cut(s) | 2002 |
| Bst6I | CTCTTC | 1 cut(s) | 333 |
| BstACI | GRCGYC | 1 cut(s) | 1794 |
| BstAUI | TGTACA | 1 cut(s) | 1698 |
| BstBAI | YACGTR | 1 cut(s) | 2378 |
| BstBI | TTCGAA | 1 cut(s) | 1249 |
| BstC8I | GCNNGC | 5 cut(s) | 1465, 1469, 1518, 1758, 2887 |
| BstEII | GGTNACC | 2 cut(s) | 1674, 2979 |
| BstF5I | GGATG | 1 cut(s) | 1654 |
| BstFNI | CGCG | 1 cut(s) | 2842 |
| BstHHI | GCGC | 3 cut(s) | 1522, 1806, 2842 |
| BstMAI | GTCTC | 3 cut(s) | 344, 1234, 2787 |
| BstMCI | CGRYCG | 2 cut(s) | 891, 2565 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1287, 1381, 1412, 1901 |
| BstNI | CCWGG | 1 cut(s) | 2002 |
| BstNSI | RCATGY | 1 cut(s) | 13 |
| BstPI | GGTNACC | 2 cut(s) | 1674, 2979 |
| BstSCI | CCNGG | 7 cut(s) | 238, 2000, 2129, 2862, 2863, 2879, 2880 |
| BstSLI | GKGCMC | 2 cut(s) | 787, 1408 |
| BstSNI | TACGTA | 1 cut(s) | 2378 |
| BstUI | CGCG | 1 cut(s) | 2842 |
| BstV1I | GCAGC | 6 cut(s) | 988, 1333, 1707, 1765, 1904, 1916 |
| BstV2I | GAAGAC | 2 cut(s) | 1322, 2086 |
| BstX2I | RGATCY | 3 cut(s) | 2394, 2442, 2646 |
| BstYI | RGATCY | 3 cut(s) | 2394, 2442, 2646 |
| BstZ17I | GTATAC | 1 cut(s) | 20 |
| Bsu15I | ATCGAT | 3 cut(s) | 557, 1824, 2428 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2250 |
| BsuTUI | ATCGAT | 3 cut(s) | 557, 1824, 2428 |
| BtgZI | GCGATG | 1 cut(s) | 1720 |
| BtsCI | GGATG | 1 cut(s) | 1654 |
| BtsI | GCAGTG | 1 cut(s) | 1408 |
| BtsIMutI | CAGTG | 4 cut(s) | 1162, 1239, 1408, 1701 |
| Cac8I | GCNNGC | 5 cut(s) | 1465, 1469, 1518, 1758, 2887 |
| CciI | TCATGA | 2 cut(s) | 406, 499 |
| CfoI | GCGC | 3 cut(s) | 1522, 1806, 2842 |
| Cfr13I | GGNCC | 9 cut(s) | 478, 688, 783, 784, 803, 826, 2254, 2364, 2883 |
| Cfr9I | CCCGGG | 2 cut(s) | 2863, 2880 |
| ClaI | ATCGAT | 3 cut(s) | 557, 1824, 2428 |
| CseI | GACGC | 2 cut(s) | 1012, 1783 |
| Csp6I | GTAC | 7 cut(s) | 225, 846, 1699, 2057, 2074, 2121, 2527 |
| CviQI | GTAC | 7 cut(s) | 225, 846, 1699, 2057, 2074, 2121, 2527 |
| DraI | TTTAAA | 2 cut(s) | 213, 2619 |
| DraIII | CACNNNGTG | 1 cut(s) | 1960 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2362 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2332 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2362 |
| EaeI | YGGCCR | 6 cut(s) | 922, 967, 1373, 1449, 1966, 2679 |
| Eam1104I | CTCTTC | 1 cut(s) | 333 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2332 |
| EarI | CTCTTC | 1 cut(s) | 333 |
| EciI | GGCGGA | 2 cut(s) | 2437, 2758 |
| Ecl136II | GAGCTC | 1 cut(s) | 2957 |
| Eco105I | TACGTA | 1 cut(s) | 2378 |
| Eco130I | CCWWGG | 2 cut(s) | 950, 1751 |
| Eco24I | GRGCYC | 2 cut(s) | 787, 2959 |
| Eco31I | GGTCTC | 1 cut(s) | 344 |
| Eco32I | GATATC | 1 cut(s) | 1990 |
| Eco47I | GGWCC | 3 cut(s) | 688, 2254, 2364 |
| Eco53kI | GAGCTC | 1 cut(s) | 2957 |
| Eco57I | CTGAAG | 2 cut(s) | 1150, 1316 |
| Eco81I | CCTNAGG | 1 cut(s) | 2250 |
| Eco88I | CYCGRG | 2 cut(s) | 2863, 2880 |
| Eco91I | GGTNACC | 2 cut(s) | 1674, 2979 |
| EcoICRI | GAGCTC | 1 cut(s) | 2957 |
| EcoO109I | RGGNCCY | 1 cut(s) | 688 |
| EcoO65I | GGTNACC | 2 cut(s) | 1674, 2979 |
| EcoRI | GAATTC | 1 cut(s) | 2291 |
| EcoRII | CCWGG | 1 cut(s) | 2000 |
| EcoRV | GATATC | 1 cut(s) | 1990 |
| EcoT14I | CCWWGG | 2 cut(s) | 950, 1751 |
| EcoT22I | ATGCAT | 1 cut(s) | 280 |
| EcoT38I | GRGCYC | 2 cut(s) | 787, 2959 |
| ErhI | CCWWGG | 2 cut(s) | 950, 1751 |
| Esp3I | CGTCTC | 1 cut(s) | 2787 |
| FaqI | GGGAC | 3 cut(s) | 353, 2088, 2113 |
| FauI | CCCGC | 2 cut(s) | 1476, 2689 |
| FbaI | TGATCA | 1 cut(s) | 1731 |
| FblI | GTMKAC | 2 cut(s) | 19, 2354 |
| FokI | GGATG | 1 cut(s) | 1661 |
| FriOI | GRGCYC | 2 cut(s) | 787, 2959 |
| GlaI | GCGC | 3 cut(s) | 1521, 1805, 2841 |
| GsaI | CCCAGC | 1 cut(s) | 1914 |
| HapII | CCGG | 5 cut(s) | 240, 925, 2131, 2864, 2881 |
| HgaI | GACGC | 2 cut(s) | 1012, 1783 |
| HhaI | GCGC | 3 cut(s) | 1522, 1806, 2842 |
| Hin1I | GRCGYC | 1 cut(s) | 1794 |
| Hin6I | GCGC | 3 cut(s) | 1520, 1804, 2840 |
| HinP1I | GCGC | 3 cut(s) | 1520, 1804, 2840 |
| HincII | GTYRAC | 2 cut(s) | 2337, 2355 |
| HindII | GTYRAC | 2 cut(s) | 2337, 2355 |
| HindIII | AAGCTT | 1 cut(s) | 832 |
| HpaII | CCGG | 5 cut(s) | 240, 925, 2131, 2864, 2881 |
| HphI | GGTGA | 9 cut(s) | 46, 1727, 1946, 2238, 2561, 2813, 2818, 2884, 2973 |
| Hpy188I | TCNGA | 6 cut(s) | 619, 2178, 2290, 2486, 2498, 2732 |
| Hpy99I | CGWCG | 5 cut(s) | 1205, 1457, 2359, 2486, 2834 |
| HpyCH4IV | ACGT | 8 cut(s) | 34, 87, 259, 844, 1200, 2377, 2481, 2780 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1287, 1381, 1412, 1901 |
| HpySE526I | ACGT | 8 cut(s) | 34, 87, 259, 844, 1200, 2377, 2481, 2780 |
| Hsp92I | GRCGYC | 1 cut(s) | 1794 |
| HspAI | GCGC | 3 cut(s) | 1520, 1804, 2840 |
| KpnI | GGTACC | 1 cut(s) | 228 |
| Ksp22I | TGATCA | 1 cut(s) | 1731 |
| LmnI | GCTCC | 3 cut(s) | 1662, 1912, 2954 |
| Lsp1109I | GCAGC | 6 cut(s) | 988, 1333, 1707, 1765, 1904, 1916 |
| LweI | GCATC | 1 cut(s) | 2125 |
| MaeII | ACGT | 8 cut(s) | 34, 87, 259, 844, 1200, 2377, 2481, 2780 |
| MbiI | CCGCTC | 3 cut(s) | 876, 1657, 1965 |
| MfeI | CAATTG | 3 cut(s) | 1481, 1979, 2452 |
| MflI | RGATCY | 3 cut(s) | 2394, 2442, 2646 |
| MhlI | GDGCHC | 3 cut(s) | 787, 1408, 2959 |
| MlsI | TGGCCA | 1 cut(s) | 2681 |
| MluNI | TGGCCA | 1 cut(s) | 2681 |
| MlyI | GAGTC | 2 cut(s) | 817, 902 |
| MmeI | TCCRAC | 6 cut(s) | 1626, 2420, 2457, 2464, 2582, 2801 |
| Mox20I | TGGCCA | 1 cut(s) | 2681 |
| Mph1103I | ATGCAT | 1 cut(s) | 280 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2093, 2875 |
| MscI | TGGCCA | 1 cut(s) | 2681 |
| MslI | CAYNNNNRTG | 2 cut(s) | 147, 744 |
| Msp20I | TGGCCA | 1 cut(s) | 2681 |
| MspA1I | CMGCKG | 1 cut(s) | 1895 |
| MspI | CCGG | 5 cut(s) | 240, 925, 2131, 2864, 2881 |
| MspR9I | CCNGG | 7 cut(s) | 240, 2002, 2131, 2864, 2865, 2881, 2882 |
| MunI | CAATTG | 3 cut(s) | 1481, 1979, 2452 |
| MvaI | CCWGG | 1 cut(s) | 2002 |
| MvnI | CGCG | 1 cut(s) | 2842 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1287, 1381, 1412, 1901 |
| NciI | CCSGG | 6 cut(s) | 240, 2131, 2864, 2865, 2881, 2882 |
| NlaIV | GGNNCC | 3 cut(s) | 226, 785, 2365 |
| NmeAIII | GCCGAG | 3 cut(s) | 831, 1351, 1417 |
| NmuCI | GTSAC | 5 cut(s) | 737, 1157, 2549, 2850, 2979 |
| NsiI | ATGCAT | 1 cut(s) | 280 |
| NspI | RCATGY | 1 cut(s) | 13 |
| NspV | TTCGAA | 1 cut(s) | 1249 |
| OliI | CACNNNNGTG | 1 cut(s) | 147 |
| PacI | TTAATTAA | 1 cut(s) | 300 |
| PagI | TCATGA | 2 cut(s) | 406, 499 |
| PciI | ACATGT | 1 cut(s) | 9 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1206, 1830 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2093, 2875 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2439 |
| PfoI | TCCNGGA | 1 cut(s) | 2129 |
| PleI | GAGTC | 2 cut(s) | 816, 901 |
| PpsI | GAGTC | 2 cut(s) | 816, 901 |
| Ppu21I | YACGTR | 1 cut(s) | 2378 |
| PpuMI | RGGWCCY | 1 cut(s) | 688 |
| PscI | ACATGT | 1 cut(s) | 9 |
| PshBI | ATTAAT | 2 cut(s) | 356, 1505 |
| Psp124BI | GAGCTC | 1 cut(s) | 2959 |
| Psp1406I | AACGTT | 1 cut(s) | 259 |
| Psp5II | RGGWCCY | 1 cut(s) | 688 |
| Psp6I | CCWGG | 1 cut(s) | 2000 |
| PspEI | GGTNACC | 2 cut(s) | 1674, 2979 |
| PspFI | CCCAGC | 1 cut(s) | 1910 |
| PspGI | CCWGG | 1 cut(s) | 2000 |
| PspN4I | GGNNCC | 3 cut(s) | 226, 785, 2365 |
| PspOMI | GGGCCC | 1 cut(s) | 783 |
| PspPI | GGNCC | 9 cut(s) | 478, 688, 783, 784, 803, 826, 2254, 2364, 2883 |
| PspPPI | RGGWCCY | 1 cut(s) | 688 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1860, 1892 |
| PsuI | RGATCY | 3 cut(s) | 2394, 2442, 2646 |
| RsaI | GTAC | 7 cut(s) | 226, 847, 1700, 2058, 2075, 2122, 2528 |
| RsaNI | GTAC | 7 cut(s) | 225, 846, 1699, 2057, 2074, 2121, 2527 |
| RseI | CAYNNNNRTG | 2 cut(s) | 147, 744 |
| SacI | GAGCTC | 1 cut(s) | 2959 |
| SalI | GTCGAC | 1 cut(s) | 2353 |
| Sau96I | GGNCC | 9 cut(s) | 478, 688, 783, 784, 803, 826, 2254, 2364, 2883 |
| ScaI | AGTACT | 1 cut(s) | 2058 |
| SchI | GAGTC | 2 cut(s) | 817, 902 |
| ScrFI | CCNGG | 7 cut(s) | 240, 2002, 2131, 2864, 2865, 2881, 2882 |
| SduI | GDGCHC | 3 cut(s) | 787, 1408, 2959 |
| SfaNI | GCATC | 1 cut(s) | 2125 |
| SfuI | TTCGAA | 1 cut(s) | 1249 |
| SinI | GGWCC | 3 cut(s) | 688, 2254, 2364 |
| SmaI | CCCGGG | 2 cut(s) | 2865, 2882 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 147, 744 |
| SmlI | CTYRAG | 1 cut(s) | 1084 |
| SmoI | CTYRAG | 1 cut(s) | 1084 |
| SnaBI | TACGTA | 1 cut(s) | 2378 |
| SspI | AATATT | 4 cut(s) | 796, 1181, 1557, 2521 |
| SstI | GAGCTC | 1 cut(s) | 2959 |
| StyD4I | CCNGG | 7 cut(s) | 238, 2000, 2129, 2862, 2863, 2879, 2880 |
| StyI | CCWWGG | 2 cut(s) | 950, 1751 |
| TaiI | ACGT | 8 cut(s) | 37, 90, 262, 847, 1203, 2380, 2484, 2783 |
| TatI | WGTACW | 4 cut(s) | 1698, 2056, 2073, 2526 |
| TauI | GCSGC | 4 cut(s) | 876, 1657, 1784, 1968 |
| TscAI | CASTG | 4 cut(s) | 1162, 1239, 1408, 1708 |
| TseFI | GTSAC | 5 cut(s) | 737, 1157, 2549, 2850, 2979 |
| TseI | GCWGC | 6 cut(s) | 1001, 1321, 1720, 1778, 1892, 1904 |
| Tsp45I | GTSAC | 5 cut(s) | 737, 1157, 2549, 2850, 2979 |
| TspGWI | ACGGA | 1 cut(s) | 725 |
| TspMI | CCCGGG | 2 cut(s) | 2863, 2880 |
| TspRI | CASTG | 4 cut(s) | 1162, 1239, 1408, 1708 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2439 |
| VneI | GTGCAC | 1 cut(s) | 1404 |
| VpaK11BI | GGWCC | 3 cut(s) | 688, 2254, 2364 |
| VspI | ATTAAT | 2 cut(s) | 356, 1505 |
| XapI | RAATTY | 8 cut(s) | 60, 207, 315, 1639, 2291, 2459, 2542, 2834 |
| XbaI | TCTAGA | 2 cut(s) | 1339, 1840 |
| XceI | RCATGY | 1 cut(s) | 13 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 847, 2689 |
| XmaI | CCCGGG | 2 cut(s) | 2863, 2880 |
| XmaJI | CCTAGG | 1 cut(s) | 950 |
| XmiI | GTMKAC | 2 cut(s) | 19, 2354 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2093, 2875 |
| ZrmI | AGTACT | 1 cut(s) | 2058 |
| Zsp2I | ATGCAT | 1 cut(s) | 280 |