pycom13g28100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000158
Physical Location & Seq
Forward (+)
24093999 .. 24095313
1315 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g28100.4

Sequence Viewer

Length: 909 bp
ATGCCCTTATTTTTTATTGTGACTTTTACATTCATCTTTCCACTATGTGACCCGGCCCGGACGGATCACTTCCCAGGCCCACTCCACTACCGTAGCACGATATTGTCCGCTTTGGGCTTACTATTCCCTCACGGTTTTGTTTTTGGGAACTCACGAGCAACTTCCCAGTGGGTCACCCATCATGGGATTGCTCTAGCCCTCTTCTCGCTTAACTTCGGAGTTCCTAGGGAACCTGAAGCCAGTGAGCTCCCAAAAGGCCTCGTGCTAGGTAAGGATGAGAATATACATTTAAGGATCACTCCCCTGGGCGACGTGGGATGTCACAAAGTGTCTTTTTTTTGTTTTAAGTTTTTAATGTTGTTTTCACTTTTAATGTACTTGCTCGGTTTCAAACTTAAGTCACTACCCCAAAACCTTTCAAGACAAACGATTAAGCCACTTTTTTTTTTTATTGATCAATGCATGTCAAATTATGTTTTGTTACGGCTGTGCATTTTCAGACAAATTGCAATTGTATTTACACGCCTCTTCGTTCTGAAGAGCTGTGGTCTGTGTAGAAGCTTCTTAAGTTCATTCCACTACGATCTCAGTTCTTGTTCAATGGAATATATGTTTCATAGTCTAGTGCATGTGATGGAAGTTATCTCAAATTTGATTTATGAGGCTAACTCCGGAAAGTTTTCTCACACACAACTGGAATCTCTAAGCATCATGAAAAAACAGTTACTTAATTTAAATCAAAGTATCAAAGTACTCTATTCTGGTGTAAGGTATACATTTATAATCTGTAAATTCTATGTACTTTTTTGCAAAAAATTAAAAAAAATAATAATAATTTTTGATATTTTCCAAGTGTCATATATATGCCTTTGTAATTGTAAGAGTGGTTTTTGGTTAAAATACTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

303

Amino Acids

34.83

Weight (kDa)

9.32

Isoelectric Point (pI)

37.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 782
AccI GTMKAC 1 cut(s) 773
AccIII TCCGGA 1 cut(s) 671
AciI CCGC 1 cut(s) 108
AclWI GGATC 2 cut(s) 72, 302
AcsI RAATTY 2 cut(s) 649, 791
AcuI CTGAAG 2 cut(s) 255, 557
AdeI CACNNNGTG 2 cut(s) 47, 328
AfaI GTAC 3 cut(s) 377, 753, 801
AfiI CCNNNNNNNGG 1 cut(s) 183
AflII CTTAAG 2 cut(s) 395, 565
AgsI TTSAA 3 cut(s) 391, 420, 600
AjiI CACGTC 1 cut(s) 313
AjnI CCWGG 2 cut(s) 73, 303
AluBI AGCT 3 cut(s) 247, 543, 561
AluI AGCT 3 cut(s) 247, 543, 561
Alw21I GWGCWC 1 cut(s) 249
AlwI GGATC 2 cut(s) 72, 302
Aor13HI TCCGGA 1 cut(s) 671
AoxI GGCC 3 cut(s) 54, 76, 256
ApoI RAATTY 2 cut(s) 649, 791
Asp700I GAANNNNTTC 1 cut(s) 679
AspA2I CCTAGG 1 cut(s) 224
AspS9I GGNCC 2 cut(s) 55, 77
AsuC2I CCSGG 2 cut(s) 53, 58
AsuHPI GGTGA 1 cut(s) 166
AvrII CCTAGG 1 cut(s) 224
BanII GRGCYC 1 cut(s) 249
BauI CACGAG 2 cut(s) 153, 260
Bbv12I GWGCWC 1 cut(s) 249
BccI CCATC 2 cut(s) 186, 628
BceAI ACGGC 1 cut(s) 500
BciT130I CCWGG 2 cut(s) 75, 305
BclI TGATCA 1 cut(s) 454
BcnI CCSGG 2 cut(s) 53, 58
BfaI CTAG 4 cut(s) 194, 225, 266, 623
BfrI CTTAAG 2 cut(s) 395, 565
BlnI CCTAGG 1 cut(s) 224
BmcAI AGTACT 1 cut(s) 753
Bme1390I CCNGG 4 cut(s) 53, 58, 75, 305
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 2 cut(s) 55, 77
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 4 cut(s) 53, 58, 75, 305
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 717
BmuI ACTGGG 1 cut(s) 160
BplI GAGNNNNNCTC 2 cut(s) 653, 685
BpuMI CCSGG 2 cut(s) 53, 58
BsaJI CCNNGG 4 cut(s) 73, 224, 303, 304
BsaWI WCCGGW 1 cut(s) 671
Bsc4I CCNNNNNNNGG 1 cut(s) 183
Bse1I ACTGG 3 cut(s) 166, 240, 699
BseAI TCCGGA 1 cut(s) 671
BseBI CCWGG 2 cut(s) 75, 305
BseDI CCNNGG 4 cut(s) 73, 224, 303, 304
BseGI GGATG 2 cut(s) 280, 323
BseLI CCNNNNNNNGG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 601
BseNI ACTGG 3 cut(s) 166, 240, 699
BshFI GGCC 3 cut(s) 56, 78, 258
BsiHKAI GWGCWC 1 cut(s) 249
BsiSI CCGG 3 cut(s) 53, 58, 672
BslI CCNNNNNNNGG 1 cut(s) 183
BsnI GGCC 3 cut(s) 56, 78, 258
Bsp1286I GDGCHC 1 cut(s) 249
Bsp13I TCCGGA 1 cut(s) 671
Bsp143I GATC 4 cut(s) 64, 294, 454, 583
BspACI CCGC 1 cut(s) 108
BspANI GGCC 3 cut(s) 56, 78, 258
BspCNI CTCAG 1 cut(s) 600
BspEI TCCGGA 1 cut(s) 671
BspHI TCATGA 2 cut(s) 711, 905
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 2 cut(s) 72, 302
BspQI GCTCTTC 1 cut(s) 533
BspTI CTTAAG 2 cut(s) 395, 565
BsrI ACTGG 3 cut(s) 166, 240, 699
BssECI CCNNGG 4 cut(s) 73, 224, 303, 304
BssMI GATC 4 cut(s) 64, 294, 454, 583
BssNAI GTATAC 1 cut(s) 774
BssSI CACGAG 2 cut(s) 153, 260
BssT1I CCWWGG 1 cut(s) 224
Bst1107I GTATAC 1 cut(s) 774
Bst2BI CACGAG 2 cut(s) 153, 260
Bst2UI CCWGG 2 cut(s) 75, 305
Bst4CI ACNGT 3 cut(s) 92, 134, 723
Bst6I CTCTTC 3 cut(s) 206, 533, 533
BstAFI CTTAAG 2 cut(s) 395, 565
BstDEI CTNAG 2 cut(s) 587, 704
BstEII GGTNACC 1 cut(s) 172
BstF5I GGATG 2 cut(s) 280, 323
BstKTI GATC 4 cut(s) 67, 297, 457, 586
BstMBI GATC 4 cut(s) 64, 294, 454, 583
BstNI CCWGG 2 cut(s) 75, 305
BstNSI RCATGY 2 cut(s) 466, 632
BstPI GGTNACC 1 cut(s) 172
BstSCI CCNGG 4 cut(s) 51, 56, 73, 303
BstZ17I GTATAC 1 cut(s) 774
BsuRI GGCC 3 cut(s) 56, 78, 258
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 2 cut(s) 280, 323
BtsIMutI CAGTG 2 cut(s) 173, 247
CciI TCATGA 2 cut(s) 711, 905
Cfr13I GGNCC 2 cut(s) 55, 77
Csp6I GTAC 3 cut(s) 376, 752, 800
CviAII CATG 5 cut(s) 182, 463, 629, 712, 906
CviQI GTAC 3 cut(s) 376, 752, 800
DdeI CTNAG 2 cut(s) 587, 704
DpnI GATC 4 cut(s) 66, 296, 456, 585
DpnII GATC 4 cut(s) 64, 294, 454, 583
DraI TTTAAA 1 cut(s) 735
DraIII CACNNNGTG 2 cut(s) 47, 328
Eam1104I CTCTTC 3 cut(s) 206, 533, 533
EarI CTCTTC 3 cut(s) 206, 533, 533
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 224
Eco147I AGGCCT 1 cut(s) 258
Eco24I GRGCYC 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 2 cut(s) 255, 557
Eco91I GGTNACC 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 247
EcoO65I GGTNACC 1 cut(s) 172
EcoRII CCWGG 2 cut(s) 73, 303
EcoT14I CCWWGG 1 cut(s) 224
EcoT22I ATGCAT 1 cut(s) 464
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 5 cut(s) 185, 466, 632, 715, 909
FatI CATG 5 cut(s) 181, 462, 628, 711, 905
FbaI TGATCA 1 cut(s) 454
FblI GTMKAC 1 cut(s) 773
FokI GGATG 2 cut(s) 287, 330
FriOI GRGCYC 1 cut(s) 249
FspBI CTAG 4 cut(s) 194, 225, 266, 623
HaeIII GGCC 3 cut(s) 56, 78, 258
HapII CCGG 3 cut(s) 53, 58, 672
Hin1II CATG 5 cut(s) 185, 466, 632, 715, 909
HindIII AAGCTT 1 cut(s) 559
HinfI GANTC 1 cut(s) 698
HpaII CCGG 3 cut(s) 53, 58, 672
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 1 cut(s) 774
Hpy188I TCNGA 3 cut(s) 218, 500, 537
Hpy188III TCNNGA 5 cut(s) 153, 420, 672, 712, 906
Hpy8I GTNNAC 1 cut(s) 774
Hpy99I CGWCG 1 cut(s) 314
HpyCH4III ACNGT 3 cut(s) 92, 134, 723
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 5 cut(s) 462, 492, 509, 628, 810
HpyF3I CTNAG 2 cut(s) 587, 704
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 5 cut(s) 185, 466, 632, 715, 909
Kpn2I TCCGGA 1 cut(s) 671
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 4 cut(s) 64, 294, 454, 583
LguI GCTCTTC 1 cut(s) 533
LmnI GCTCC 1 cut(s) 252
LweI GCATC 1 cut(s) 717
MaeI CTAG 4 cut(s) 194, 225, 266, 623
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 7 cut(s) 19, 47, 172, 320, 399, 480, 723
MalI GATC 4 cut(s) 66, 296, 456, 585
MboI GATC 4 cut(s) 64, 294, 454, 583
MboII GAAGA 3 cut(s) 193, 520, 550
MfeI CAATTG 1 cut(s) 510
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 9 cut(s) 469, 504, 510, 649, 730, 791, 815, 834, 874
MnlI CCTC 5 cut(s) 138, 209, 269, 536, 655
Mph1103I ATGCAT 1 cut(s) 464
MroI TCCGGA 1 cut(s) 671
MroXI GAANNNNTTC 1 cut(s) 679
MslI CAYNNNNRTG 1 cut(s) 862
MspCI CTTAAG 2 cut(s) 395, 565
MspI CCGG 3 cut(s) 53, 58, 672
MspR9I CCNGG 4 cut(s) 53, 58, 75, 305
MunI CAATTG 1 cut(s) 510
MvaI CCWGG 2 cut(s) 75, 305
NciI CCSGG 2 cut(s) 53, 58
NdeII GATC 4 cut(s) 64, 294, 454, 583
NlaIII CATG 5 cut(s) 185, 466, 632, 715, 909
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 5 cut(s) 19, 47, 172, 320, 399
NsiI ATGCAT 1 cut(s) 464
NspI RCATGY 2 cut(s) 466, 632
PagI TCATGA 2 cut(s) 711, 905
PasI CCCWGGG 1 cut(s) 304
PceI AGGCCT 1 cut(s) 258
PciSI GCTCTTC 1 cut(s) 533
PdmI GAANNNNTTC 1 cut(s) 679
PfeI GAWTC 1 cut(s) 698
PsiI TTATAA 1 cut(s) 782
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 73, 303
PspEI GGTNACC 1 cut(s) 172
PspGI CCWGG 2 cut(s) 73, 303
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 2 cut(s) 55, 77
RsaI GTAC 3 cut(s) 377, 753, 801
RsaNI GTAC 3 cut(s) 376, 752, 800
RseI CAYNNNNRTG 1 cut(s) 862
SacI GAGCTC 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 533
Sau3AI GATC 4 cut(s) 64, 294, 454, 583
Sau96I GGNCC 2 cut(s) 55, 77
ScaI AGTACT 1 cut(s) 753
ScrFI CCNGG 4 cut(s) 53, 58, 75, 305
SduI GDGCHC 1 cut(s) 249
SetI ASST 8 cut(s) 235, 249, 271, 315, 417, 545, 563, 773
SfaNI GCATC 1 cut(s) 717
SmiI ATTTAAAT 1 cut(s) 735
SmiMI CAYNNNNRTG 1 cut(s) 862
SmlI CTYRAG 2 cut(s) 395, 565
SmoI CTYRAG 2 cut(s) 395, 565
Sse9I AATT 9 cut(s) 469, 504, 510, 649, 730, 791, 815, 834, 874
SseBI AGGCCT 1 cut(s) 258
SsiI CCGC 1 cut(s) 108
SspMI CTAG 4 cut(s) 194, 225, 266, 623
SstI GAGCTC 1 cut(s) 249
StuI AGGCCT 1 cut(s) 258
StyD4I CCNGG 4 cut(s) 51, 56, 73, 303
StyI CCWWGG 1 cut(s) 224
SwaI ATTTAAAT 1 cut(s) 735
TaaI ACNGT 3 cut(s) 92, 134, 723
TaiI ACGT 1 cut(s) 315
TasI AATT 9 cut(s) 469, 504, 510, 649, 730, 791, 815, 834, 874
TatI WGTACW 3 cut(s) 375, 751, 799
TfiI GAWTC 1 cut(s) 698
TscAI CASTG 2 cut(s) 173, 247
TseFI GTSAC 5 cut(s) 19, 47, 172, 320, 399
Tsp45I GTSAC 5 cut(s) 19, 47, 172, 320, 399
TspDTI ATGAA 4 cut(s) 22, 561, 605, 728
TspGWI ACGGA 1 cut(s) 77
TspRI CASTG 2 cut(s) 173, 247
Vha464I CTTAAG 2 cut(s) 395, 565
XapI RAATTY 2 cut(s) 649, 791
XceI RCATGY 2 cut(s) 466, 632
XmaJI CCTAGG 1 cut(s) 224
XmiI GTMKAC 1 cut(s) 773
XmnI GAANNNNTTC 1 cut(s) 679
XspI CTAG 4 cut(s) 194, 225, 266, 623
ZrmI AGTACT 1 cut(s) 753
Zsp2I ATGCAT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.