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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 435 |
| AccI | GTMKAC | 1 cut(s) | 70 |
| AciI | CCGC | 3 cut(s) | 111, 168, 433 |
| AcoI | YGGCCR | 1 cut(s) | 691 |
| AcsI | RAATTY | 6 cut(s) | 97, 445, 470, 476, 491, 722 |
| AcyI | GRCGYC | 1 cut(s) | 405 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 42, 157, 578, 689 |
| AgeI | ACCGGT | 1 cut(s) | 63 |
| AgsI | TTSAA | 3 cut(s) | 15, 454, 476 |
| AjnI | CCWGG | 1 cut(s) | 572 |
| AluBI | AGCT | 2 cut(s) | 386, 552 |
| AluI | AGCT | 2 cut(s) | 386, 552 |
| Alw21I | GWGCWC | 2 cut(s) | 388, 554 |
| Alw26I | GTCTC | 1 cut(s) | 532 |
| Ama87I | CYCGRG | 1 cut(s) | 682 |
| AoxI | GGCC | 2 cut(s) | 642, 691 |
| ApoI | RAATTY | 6 cut(s) | 97, 445, 470, 476, 491, 722 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 723, 755 |
| AsiGI | ACCGGT | 1 cut(s) | 63 |
| AspS9I | GGNCC | 1 cut(s) | 643 |
| AsuC2I | CCSGG | 3 cut(s) | 683, 684, 695 |
| AsuHPI | GGTGA | 4 cut(s) | 325, 343, 593, 682 |
| AsuII | TTCGAA | 1 cut(s) | 344 |
| AvaI | CYCGRG | 1 cut(s) | 682 |
| BanI | GGYRCC | 1 cut(s) | 435 |
| BanII | GRGCYC | 3 cut(s) | 388, 554, 683 |
| BauI | CACGAG | 3 cut(s) | 535, 560, 600 |
| BbsI | GAAGAC | 1 cut(s) | 242 |
| Bbv12I | GWGCWC | 2 cut(s) | 388, 554 |
| BbvCI | CCTCAGC | 1 cut(s) | 237 |
| BccI | CCATC | 1 cut(s) | 571 |
| BciT130I | CCWGG | 1 cut(s) | 574 |
| BcnI | CCSGG | 3 cut(s) | 683, 684, 695 |
| BcoDI | GTCTC | 1 cut(s) | 532 |
| BfaI | CTAG | 4 cut(s) | 89, 231, 309, 728 |
| Bme1390I | CCNGG | 4 cut(s) | 574, 683, 684, 695 |
| BmeT110I | CYCGRG | 1 cut(s) | 682 |
| BmgT120I | GGNCC | 1 cut(s) | 643 |
| BmiI | GGNNCC | 7 cut(s) | 34, 62, 109, 143, 149, 166, 437 |
| BmrFI | CCNGG | 4 cut(s) | 574, 683, 684, 695 |
| BpiI | GAAGAC | 1 cut(s) | 242 |
| Bpu10I | CCTNAGC | 1 cut(s) | 237 |
| Bpu14I | TTCGAA | 1 cut(s) | 344 |
| BpuMI | CCSGG | 3 cut(s) | 683, 684, 695 |
| BsaAI | YACGTR | 2 cut(s) | 466, 530 |
| BsaHI | GRCGYC | 1 cut(s) | 405 |
| BsaI | GGTCTC | 1 cut(s) | 532 |
| BsaJI | CCNNGG | 2 cut(s) | 572, 682 |
| BsaWI | WCCGGW | 2 cut(s) | 63, 144 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 42, 157, 578, 689 |
| Bse118I | RCCGGY | 2 cut(s) | 42, 63 |
| BseBI | CCWGG | 1 cut(s) | 574 |
| BseDI | CCNNGG | 2 cut(s) | 572, 682 |
| BseGI | GGATG | 2 cut(s) | 582, 692 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 42, 157, 578, 689 |
| BseMII | CTCAG | 1 cut(s) | 251 |
| BshFI | GGCC | 2 cut(s) | 644, 693 |
| BshNI | GGYRCC | 1 cut(s) | 435 |
| BshTI | ACCGGT | 1 cut(s) | 63 |
| BsiHKAI | GWGCWC | 2 cut(s) | 388, 554 |
| BsiHKCI | CYCGRG | 1 cut(s) | 682 |
| BsiSI | CCGG | 5 cut(s) | 43, 64, 145, 683, 694 |
| BslFI | GGGAC | 1 cut(s) | 187 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 42, 157, 578, 689 |
| BsmAI | GTCTC | 1 cut(s) | 532 |
| BsmFI | GGGAC | 1 cut(s) | 187 |
| BsnI | GGCC | 2 cut(s) | 644, 693 |
| Bso31I | GGTCTC | 1 cut(s) | 532 |
| BsoBI | CYCGRG | 1 cut(s) | 682 |
| Bsp119I | TTCGAA | 1 cut(s) | 344 |
| Bsp1286I | GDGCHC | 3 cut(s) | 388, 554, 683 |
| BspACI | CCGC | 3 cut(s) | 111, 168, 433 |
| BspANI | GGCC | 2 cut(s) | 644, 693 |
| BspCNI | CTCAG | 1 cut(s) | 250 |
| BspLI | GGNNCC | 7 cut(s) | 34, 62, 109, 143, 149, 166, 437 |
| BspQI | GCTCTTC | 1 cut(s) | 559 |
| BspT104I | TTCGAA | 1 cut(s) | 344 |
| BspT107I | GGYRCC | 1 cut(s) | 435 |
| BspTNI | GGTCTC | 1 cut(s) | 532 |
| BsrFI | RCCGGY | 2 cut(s) | 42, 63 |
| BssAI | RCCGGY | 2 cut(s) | 42, 63 |
| BssECI | CCNNGG | 2 cut(s) | 572, 682 |
| BssNI | GRCGYC | 1 cut(s) | 405 |
| BssSI | CACGAG | 3 cut(s) | 535, 560, 600 |
| Bst2BI | CACGAG | 3 cut(s) | 535, 560, 600 |
| Bst2UI | CCWGG | 1 cut(s) | 574 |
| Bst4CI | ACNGT | 5 cut(s) | 37, 80, 127, 626, 670 |
| Bst6I | CTCTTC | 3 cut(s) | 266, 292, 559 |
| BstACI | GRCGYC | 1 cut(s) | 405 |
| BstBAI | YACGTR | 2 cut(s) | 466, 530 |
| BstBI | TTCGAA | 1 cut(s) | 344 |
| BstC8I | GCNNGC | 1 cut(s) | 700 |
| BstDEI | CTNAG | 2 cut(s) | 237, 703 |
| BstEII | GGTNACC | 1 cut(s) | 581 |
| BstF5I | GGATG | 2 cut(s) | 582, 692 |
| BstMAI | GTCTC | 1 cut(s) | 532 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 699 |
| BstNI | CCWGG | 1 cut(s) | 574 |
| BstNSI | RCATGY | 1 cut(s) | 702 |
| BstPI | GGTNACC | 1 cut(s) | 581 |
| BstSCI | CCNGG | 4 cut(s) | 572, 681, 682, 693 |
| BstSNI | TACGTA | 1 cut(s) | 530 |
| BstV2I | GAAGAC | 1 cut(s) | 242 |
| BsuRI | GGCC | 2 cut(s) | 644, 693 |
| BtsCI | GGATG | 2 cut(s) | 582, 692 |
| Cac8I | GCNNGC | 1 cut(s) | 700 |
| Cfr10I | RCCGGY | 2 cut(s) | 42, 63 |
| Cfr13I | GGNCC | 1 cut(s) | 643 |
| Cfr9I | CCCGGG | 1 cut(s) | 682 |
| CseI | GACGC | 1 cut(s) | 413 |
| CspAI | ACCGGT | 1 cut(s) | 63 |
| CviAII | CATG | 2 cut(s) | 634, 699 |
| CviJI | RGCY | 7 cut(s) | 241, 386, 419, 552, 644, 681, 693 |
| CviKI_1 | RGCY | 7 cut(s) | 241, 386, 419, 552, 644, 681, 693 |
| DdeI | CTNAG | 2 cut(s) | 237, 703 |
| EaeI | YGGCCR | 1 cut(s) | 691 |
| Eam1104I | CTCTTC | 3 cut(s) | 266, 292, 559 |
| EarI | CTCTTC | 3 cut(s) | 266, 292, 559 |
| Ecl136II | GAGCTC | 2 cut(s) | 386, 552 |
| Eco105I | TACGTA | 1 cut(s) | 530 |
| Eco24I | GRGCYC | 3 cut(s) | 388, 554, 683 |
| Eco31I | GGTCTC | 1 cut(s) | 532 |
| Eco53kI | GAGCTC | 2 cut(s) | 386, 552 |
| Eco88I | CYCGRG | 1 cut(s) | 682 |
| Eco91I | GGTNACC | 1 cut(s) | 581 |
| EcoICRI | GAGCTC | 2 cut(s) | 386, 552 |
| EcoO65I | GGTNACC | 1 cut(s) | 581 |
| EcoRII | CCWGG | 1 cut(s) | 572 |
| EcoT38I | GRGCYC | 3 cut(s) | 388, 554, 683 |
| FaeI | CATG | 2 cut(s) | 637, 702 |
| FaqI | GGGAC | 1 cut(s) | 187 |
| FatI | CATG | 2 cut(s) | 633, 698 |
| FauNDI | CATATG | 1 cut(s) | 499 |
| FblI | GTMKAC | 1 cut(s) | 70 |
| FokI | GGATG | 2 cut(s) | 589, 699 |
| FriOI | GRGCYC | 3 cut(s) | 388, 554, 683 |
| FspBI | CTAG | 4 cut(s) | 89, 231, 309, 728 |
| HaeIII | GGCC | 2 cut(s) | 644, 693 |
| HapII | CCGG | 5 cut(s) | 43, 64, 145, 683, 694 |
| HgaI | GACGC | 1 cut(s) | 413 |
| Hin1I | GRCGYC | 1 cut(s) | 405 |
| Hin1II | CATG | 2 cut(s) | 637, 702 |
| HinfI | GANTC | 4 cut(s) | 55, 118, 346, 360 |
| HpaII | CCGG | 5 cut(s) | 43, 64, 145, 683, 694 |
| HphI | GGTGA | 4 cut(s) | 325, 343, 593, 682 |
| Hpy166II | GTNNAC | 2 cut(s) | 40, 71 |
| Hpy188I | TCNGA | 1 cut(s) | 60 |
| Hpy188III | TCNNGA | 4 cut(s) | 372, 381, 401, 613 |
| Hpy8I | GTNNAC | 2 cut(s) | 40, 71 |
| Hpy99I | CGWCG | 1 cut(s) | 407 |
| HpyAV | CCTTC | 2 cut(s) | 233, 378 |
| HpyCH4III | ACNGT | 5 cut(s) | 37, 80, 127, 626, 670 |
| HpyCH4IV | ACGT | 2 cut(s) | 465, 529 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 699 |
| HpyF3I | CTNAG | 2 cut(s) | 237, 703 |
| HpySE526I | ACGT | 2 cut(s) | 465, 529 |
| Hsp92I | GRCGYC | 1 cut(s) | 405 |
| Hsp92II | CATG | 2 cut(s) | 637, 702 |
| LguI | GCTCTTC | 1 cut(s) | 559 |
| LmnI | GCTCC | 1 cut(s) | 549 |
| LpnPI | CCDG | 9 cut(s) | 56, 77, 158, 394, 559, 586, 626, 696, 707 |
| MaeI | CTAG | 4 cut(s) | 89, 231, 309, 728 |
| MaeII | ACGT | 2 cut(s) | 465, 529 |
| MaeIII | GTNAC | 2 cut(s) | 581, 664 |
| MboII | GAAGA | 9 cut(s) | 203, 206, 242, 253, 273, 279, 313, 320, 546 |
| MhlI | GDGCHC | 3 cut(s) | 388, 554, 683 |
| MlyI | GAGTC | 1 cut(s) | 354 |
| MnlI | CCTC | 8 cut(s) | 215, 246, 269, 295, 408, 449, 622, 634 |
| MseI | TTAA | 3 cut(s) | 101, 129, 720 |
| MspI | CCGG | 5 cut(s) | 43, 64, 145, 683, 694 |
| MspR9I | CCNGG | 4 cut(s) | 574, 683, 684, 695 |
| MvaI | CCWGG | 1 cut(s) | 574 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 699 |
| NciI | CCSGG | 3 cut(s) | 683, 684, 695 |
| NdeI | CATATG | 1 cut(s) | 499 |
| NlaIII | CATG | 2 cut(s) | 637, 702 |
| NlaIV | GGNNCC | 7 cut(s) | 34, 62, 109, 143, 149, 166, 437 |
| NmuCI | GTSAC | 1 cut(s) | 581 |
| NspI | RCATGY | 1 cut(s) | 702 |
| NspV | TTCGAA | 1 cut(s) | 344 |
| PaeI | GCATGC | 1 cut(s) | 702 |
| PciSI | GCTCTTC | 1 cut(s) | 559 |
| PfeI | GAWTC | 3 cut(s) | 55, 118, 346 |
| PinAI | ACCGGT | 1 cut(s) | 63 |
| PleI | GAGTC | 1 cut(s) | 354 |
| PpsI | GAGTC | 1 cut(s) | 354 |
| Ppu21I | YACGTR | 2 cut(s) | 466, 530 |
| Psp124BI | GAGCTC | 2 cut(s) | 388, 554 |
| Psp6I | CCWGG | 1 cut(s) | 572 |
| PspEI | GGTNACC | 1 cut(s) | 581 |
| PspGI | CCWGG | 1 cut(s) | 572 |
| PspN4I | GGNNCC | 7 cut(s) | 34, 62, 109, 143, 149, 166, 437 |
| PspPI | GGNCC | 1 cut(s) | 643 |
| SacI | GAGCTC | 2 cut(s) | 388, 554 |
| SapI | GCTCTTC | 1 cut(s) | 559 |
| SaqAI | TTAA | 3 cut(s) | 101, 129, 720 |
| Sau96I | GGNCC | 1 cut(s) | 643 |
| SchI | GAGTC | 1 cut(s) | 354 |
| ScrFI | CCNGG | 4 cut(s) | 574, 683, 684, 695 |
| SduI | GDGCHC | 3 cut(s) | 388, 554, 683 |
| SetI | ASST | 8 cut(s) | 180, 238, 388, 400, 468, 532, 544, 554 |
| SfuI | TTCGAA | 1 cut(s) | 344 |
| SmaI | CCCGGG | 1 cut(s) | 684 |
| SnaBI | TACGTA | 1 cut(s) | 530 |
| SphI | GCATGC | 1 cut(s) | 702 |
| SsiI | CCGC | 3 cut(s) | 111, 168, 433 |
| SspMI | CTAG | 4 cut(s) | 89, 231, 309, 728 |
| SstI | GAGCTC | 2 cut(s) | 388, 554 |
| StyD4I | CCNGG | 4 cut(s) | 572, 681, 682, 693 |
| TaaI | ACNGT | 5 cut(s) | 37, 80, 127, 626, 670 |
| TaiI | ACGT | 2 cut(s) | 468, 532 |
| TaqI | TCGA | 3 cut(s) | 121, 344, 639 |
| TaqII | GACCGA | 1 cut(s) | 88 |
| TfiI | GAWTC | 3 cut(s) | 55, 118, 346 |
| Tru1I | TTAA | 3 cut(s) | 101, 129, 720 |
| Tru9I | TTAA | 3 cut(s) | 101, 129, 720 |
| TseFI | GTSAC | 1 cut(s) | 581 |
| Tsp45I | GTSAC | 1 cut(s) | 581 |
| TspDTI | ATGAA | 3 cut(s) | 257, 486, 666 |
| TspMI | CCCGGG | 1 cut(s) | 682 |
| XapI | RAATTY | 6 cut(s) | 97, 445, 470, 476, 491, 722 |
| XceI | RCATGY | 1 cut(s) | 702 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 158 |
| XmaI | CCCGGG | 1 cut(s) | 682 |
| XmiI | GTMKAC | 1 cut(s) | 70 |
| XspI | CTAG | 4 cut(s) | 89, 231, 309, 728 |