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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 939 |
| AccBSI | CCGCTC | 1 cut(s) | 490 |
| AciI | CCGC | 6 cut(s) | 153, 201, 470, 488, 516, 1063 |
| AclWI | GGATC | 3 cut(s) | 395, 480, 710 |
| AcsI | RAATTY | 6 cut(s) | 14, 760, 801, 859, 992, 1277 |
| AcuI | CTGAAG | 1 cut(s) | 292 |
| AfaI | GTAC | 5 cut(s) | 672, 784, 930, 1099, 1389 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 149, 165, 276, 431, 432, 433, 466, 591, 939 |
| AgsI | TTSAA | 9 cut(s) | 7, 128, 738, 765, 811, 922, 1115, 1276, 1446 |
| AjnI | CCWGG | 1 cut(s) | 711 |
| AluBI | AGCT | 2 cut(s) | 340, 655 |
| AluI | AGCT | 2 cut(s) | 340, 655 |
| Alw21I | GWGCWC | 2 cut(s) | 342, 657 |
| Alw26I | GTCTC | 2 cut(s) | 994, 1053 |
| AlwI | GGATC | 3 cut(s) | 395, 480, 710 |
| Ama87I | CYCGRG | 4 cut(s) | 148, 165, 464, 481 |
| AoxI | GGCC | 7 cut(s) | 145, 168, 349, 435, 461, 484, 664 |
| ApaI | GGGCCC | 3 cut(s) | 172, 439, 488 |
| ApoI | RAATTY | 6 cut(s) | 14, 760, 801, 859, 992, 1277 |
| AseI | ATTAAT | 2 cut(s) | 72, 120 |
| AsuC2I | CCSGG | 8 cut(s) | 144, 149, 150, 166, 167, 460, 482, 483 |
| AsuHPI | GGTGA | 2 cut(s) | 259, 574 |
| AvaI | CYCGRG | 4 cut(s) | 148, 165, 464, 481 |
| AvaII | GGWCC | 2 cut(s) | 61, 156 |
| AxyI | CCTNAGG | 1 cut(s) | 430 |
| BaeGI | GKGCMC | 3 cut(s) | 172, 439, 488 |
| BanII | GRGCYC | 5 cut(s) | 172, 342, 439, 488, 657 |
| BauI | CACGAG | 4 cut(s) | 246, 353, 561, 1265 |
| Bbv12I | GWGCWC | 2 cut(s) | 342, 657 |
| BccI | CCATC | 2 cut(s) | 279, 594 |
| BciT130I | CCWGG | 1 cut(s) | 713 |
| BcnI | CCSGG | 8 cut(s) | 144, 149, 150, 166, 167, 460, 482, 483 |
| BcoDI | GTCTC | 2 cut(s) | 994, 1053 |
| BfaI | CTAG | 4 cut(s) | 287, 359, 602, 674 |
| BfmI | CTRYAG | 1 cut(s) | 1425 |
| Bme1390I | CCNGG | 9 cut(s) | 144, 149, 150, 166, 167, 460, 482, 483, 713 |
| Bme18I | GGWCC | 2 cut(s) | 61, 156 |
| BmeT110I | CYCGRG | 4 cut(s) | 148, 165, 464, 481 |
| BmiI | GGNNCC | 7 cut(s) | 157, 170, 324, 436, 437, 486, 639 |
| BmrFI | CCNGG | 9 cut(s) | 144, 149, 150, 166, 167, 460, 482, 483, 713 |
| BmrI | ACTGGG | 1 cut(s) | 253 |
| BmsI | GCATC | 1 cut(s) | 1074 |
| BmuI | ACTGGG | 1 cut(s) | 253 |
| Bpu10I | CCTNAGC | 1 cut(s) | 398 |
| BpuMI | CCSGG | 8 cut(s) | 144, 149, 150, 166, 167, 460, 482, 483 |
| BsaAI | YACGTR | 1 cut(s) | 782 |
| BsaI | GGTCTC | 1 cut(s) | 1053 |
| BsaJI | CCNNGG | 7 cut(s) | 148, 165, 465, 481, 711, 712, 1027 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 149, 165, 276, 431, 432, 433, 466, 591, 939 |
| Bse1I | ACTGG | 4 cut(s) | 259, 333, 648, 1420 |
| Bse21I | CCTNAGG | 1 cut(s) | 430 |
| BseBI | CCWGG | 1 cut(s) | 713 |
| BseDI | CCNNGG | 7 cut(s) | 148, 165, 465, 481, 711, 712, 1027 |
| BseGI | GGATG | 7 cut(s) | 139, 416, 455, 688, 731, 1065, 1151 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 149, 165, 276, 431, 432, 433, 466, 591, 939 |
| BseMII | CTCAG | 2 cut(s) | 35, 389 |
| BseNI | ACTGG | 4 cut(s) | 259, 333, 648, 1420 |
| BseSI | GKGCMC | 3 cut(s) | 172, 439, 488 |
| BshFI | GGCC | 7 cut(s) | 147, 170, 351, 437, 463, 486, 666 |
| BsiHKAI | GWGCWC | 2 cut(s) | 342, 657 |
| BsiHKCI | CYCGRG | 4 cut(s) | 148, 165, 464, 481 |
| BsiSI | CCGG | 5 cut(s) | 144, 149, 166, 460, 482 |
| BslFI | GGGAC | 2 cut(s) | 169, 1061 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 149, 165, 276, 431, 432, 433, 466, 591, 939 |
| BsmAI | GTCTC | 2 cut(s) | 994, 1053 |
| BsmFI | GGGAC | 2 cut(s) | 169, 1061 |
| BsnI | GGCC | 7 cut(s) | 147, 170, 351, 437, 463, 486, 666 |
| Bso31I | GGTCTC | 1 cut(s) | 1053 |
| BsoBI | CYCGRG | 4 cut(s) | 148, 165, 464, 481 |
| Bsp120I | GGGCCC | 3 cut(s) | 168, 435, 484 |
| Bsp1286I | GDGCHC | 5 cut(s) | 172, 342, 439, 488, 657 |
| Bsp1407I | TGTACA | 1 cut(s) | 1097 |
| Bsp143I | GATC | 3 cut(s) | 387, 472, 702 |
| BspACI | CCGC | 6 cut(s) | 153, 201, 470, 488, 516, 1063 |
| BspANI | GGCC | 7 cut(s) | 147, 170, 351, 437, 463, 486, 666 |
| BspCNI | CTCAG | 2 cut(s) | 34, 390 |
| BspHI | TCATGA | 1 cut(s) | 1348 |
| BspLI | GGNNCC | 7 cut(s) | 157, 170, 324, 436, 437, 486, 639 |
| BspPI | GGATC | 3 cut(s) | 395, 480, 710 |
| BspTNI | GGTCTC | 1 cut(s) | 1053 |
| BsrBI | CCGCTC | 1 cut(s) | 490 |
| BsrGI | TGTACA | 1 cut(s) | 1097 |
| BsrI | ACTGG | 4 cut(s) | 259, 333, 648, 1420 |
| BssECI | CCNNGG | 7 cut(s) | 148, 165, 465, 481, 711, 712, 1027 |
| BssMI | GATC | 3 cut(s) | 387, 472, 702 |
| BssSI | CACGAG | 4 cut(s) | 246, 353, 561, 1265 |
| BssT1I | CCWWGG | 1 cut(s) | 1027 |
| Bst2BI | CACGAG | 4 cut(s) | 246, 353, 561, 1265 |
| Bst2UI | CCWGG | 1 cut(s) | 713 |
| Bst4CI | ACNGT | 6 cut(s) | 185, 227, 500, 542, 1307, 1426 |
| Bst6I | CTCTTC | 1 cut(s) | 614 |
| BstAUI | TGTACA | 1 cut(s) | 1097 |
| BstBAI | YACGTR | 1 cut(s) | 782 |
| BstC8I | GCNNGC | 1 cut(s) | 488 |
| BstDEI | CTNAG | 4 cut(s) | 21, 398, 430, 1363 |
| BstEII | GGTNACC | 2 cut(s) | 265, 580 |
| BstF5I | GGATG | 7 cut(s) | 139, 416, 455, 688, 731, 1065, 1151 |
| BstKTI | GATC | 3 cut(s) | 390, 475, 705 |
| BstMAI | GTCTC | 2 cut(s) | 994, 1053 |
| BstMBI | GATC | 3 cut(s) | 387, 472, 702 |
| BstNI | CCWGG | 1 cut(s) | 713 |
| BstNSI | RCATGY | 2 cut(s) | 1104, 1394 |
| BstPI | GGTNACC | 2 cut(s) | 265, 580 |
| BstSCI | CCNGG | 9 cut(s) | 142, 147, 148, 164, 165, 458, 480, 481, 711 |
| BstSFI | CTRYAG | 1 cut(s) | 1425 |
| BstSLI | GKGCMC | 3 cut(s) | 172, 439, 488 |
| BstSNI | TACGTA | 1 cut(s) | 782 |
| Bsu36I | CCTNAGG | 1 cut(s) | 430 |
| BsuRI | GGCC | 7 cut(s) | 147, 170, 351, 437, 463, 486, 666 |
| BtgZI | GCGATG | 2 cut(s) | 417, 732 |
| BtsCI | GGATG | 7 cut(s) | 139, 416, 455, 688, 731, 1065, 1151 |
| BtsIMutI | CAGTG | 6 cut(s) | 29, 266, 340, 655, 1145, 1413 |
| Cac8I | GCNNGC | 1 cut(s) | 488 |
| CciI | TCATGA | 1 cut(s) | 1348 |
| Cfr9I | CCCGGG | 3 cut(s) | 148, 165, 481 |
| Csp6I | GTAC | 5 cut(s) | 671, 783, 929, 1098, 1388 |
| CviAII | CATG | 8 cut(s) | 133, 275, 590, 934, 1101, 1244, 1349, 1391 |
| CviQI | GTAC | 5 cut(s) | 671, 783, 929, 1098, 1388 |
| DdeI | CTNAG | 4 cut(s) | 21, 398, 430, 1363 |
| DpnI | GATC | 3 cut(s) | 389, 474, 704 |
| DpnII | GATC | 3 cut(s) | 387, 472, 702 |
| DraI | TTTAAA | 2 cut(s) | 835, 1282 |
| Eam1104I | CTCTTC | 1 cut(s) | 614 |
| EarI | CTCTTC | 1 cut(s) | 614 |
| EciI | GGCGGA | 1 cut(s) | 485 |
| Ecl136II | GAGCTC | 2 cut(s) | 340, 655 |
| Eco105I | TACGTA | 1 cut(s) | 782 |
| Eco130I | CCWWGG | 1 cut(s) | 1027 |
| Eco147I | AGGCCT | 2 cut(s) | 351, 666 |
| Eco24I | GRGCYC | 5 cut(s) | 172, 342, 439, 488, 657 |
| Eco31I | GGTCTC | 1 cut(s) | 1053 |
| Eco47I | GGWCC | 2 cut(s) | 61, 156 |
| Eco53kI | GAGCTC | 2 cut(s) | 340, 655 |
| Eco57I | CTGAAG | 1 cut(s) | 292 |
| Eco81I | CCTNAGG | 1 cut(s) | 430 |
| Eco88I | CYCGRG | 4 cut(s) | 148, 165, 464, 481 |
| Eco91I | GGTNACC | 2 cut(s) | 265, 580 |
| EcoICRI | GAGCTC | 2 cut(s) | 340, 655 |
| EcoO109I | RGGNCCY | 1 cut(s) | 435 |
| EcoO65I | GGTNACC | 2 cut(s) | 265, 580 |
| EcoRII | CCWGG | 1 cut(s) | 711 |
| EcoT14I | CCWWGG | 1 cut(s) | 1027 |
| EcoT38I | GRGCYC | 5 cut(s) | 172, 342, 439, 488, 657 |
| ErhI | CCWWGG | 1 cut(s) | 1027 |
| FaeI | CATG | 8 cut(s) | 136, 278, 593, 937, 1104, 1247, 1352, 1394 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1063, 1095 |
| FaqI | GGGAC | 2 cut(s) | 169, 1061 |
| FatI | CATG | 8 cut(s) | 132, 274, 589, 933, 1100, 1243, 1348, 1390 |
| FauI | CCCGC | 2 cut(s) | 146, 495 |
| FauNDI | CATATG | 2 cut(s) | 1225, 1332 |
| FokI | GGATG | 7 cut(s) | 126, 423, 442, 695, 738, 1052, 1138 |
| FriOI | GRGCYC | 5 cut(s) | 172, 342, 439, 488, 657 |
| FspBI | CTAG | 4 cut(s) | 287, 359, 602, 674 |
| HaeIII | GGCC | 7 cut(s) | 147, 170, 351, 437, 463, 486, 666 |
| HapII | CCGG | 5 cut(s) | 144, 149, 166, 460, 482 |
| Hin1II | CATG | 8 cut(s) | 136, 278, 593, 937, 1104, 1247, 1352, 1394 |
| HinfI | GANTC | 2 cut(s) | 174, 1377 |
| HpaII | CCGG | 5 cut(s) | 144, 149, 166, 460, 482 |
| HphI | GGTGA | 2 cut(s) | 259, 574 |
| Hpy188I | TCNGA | 3 cut(s) | 311, 626, 1382 |
| Hpy188III | TCNNGA | 4 cut(s) | 246, 561, 1265, 1349 |
| HpyAV | CCTTC | 1 cut(s) | 304 |
| HpyCH4III | ACNGT | 6 cut(s) | 185, 227, 500, 542, 1307, 1426 |
| HpyCH4IV | ACGT | 2 cut(s) | 781, 1327 |
| HpyCH4V | TGCA | 4 cut(s) | 12, 93, 1394, 1435 |
| HpyF3I | CTNAG | 4 cut(s) | 21, 398, 430, 1363 |
| HpySE526I | ACGT | 2 cut(s) | 781, 1327 |
| Hsp92II | CATG | 8 cut(s) | 136, 278, 593, 937, 1104, 1247, 1352, 1394 |
| Kzo9I | GATC | 3 cut(s) | 387, 472, 702 |
| LmnI | GCTCC | 3 cut(s) | 345, 495, 660 |
| LweI | GCATC | 1 cut(s) | 1074 |
| MaeI | CTAG | 4 cut(s) | 287, 359, 602, 674 |
| MaeII | ACGT | 2 cut(s) | 781, 1327 |
| MaeIII | GTNAC | 9 cut(s) | 135, 185, 265, 413, 451, 580, 728, 1168, 1236 |
| MalI | GATC | 3 cut(s) | 389, 474, 704 |
| MbiI | CCGCTC | 1 cut(s) | 490 |
| MboI | GATC | 3 cut(s) | 387, 472, 702 |
| MboII | GAAGA | 2 cut(s) | 601, 1348 |
| MhlI | GDGCHC | 5 cut(s) | 172, 342, 439, 488, 657 |
| MlyI | GAGTC | 1 cut(s) | 168 |
| MnlI | CCTC | 8 cut(s) | 231, 362, 460, 546, 617, 677, 1165, 1376 |
| MspI | CCGG | 5 cut(s) | 144, 149, 166, 460, 482 |
| MspR9I | CCNGG | 9 cut(s) | 144, 149, 150, 166, 167, 460, 482, 483, 713 |
| MvaI | CCWGG | 1 cut(s) | 713 |
| NciI | CCSGG | 8 cut(s) | 144, 149, 150, 166, 167, 460, 482, 483 |
| NdeI | CATATG | 2 cut(s) | 1225, 1332 |
| NdeII | GATC | 3 cut(s) | 387, 472, 702 |
| NlaIII | CATG | 8 cut(s) | 136, 278, 593, 937, 1104, 1247, 1352, 1394 |
| NlaIV | GGNNCC | 7 cut(s) | 157, 170, 324, 436, 437, 486, 639 |
| NmuCI | GTSAC | 6 cut(s) | 135, 265, 413, 451, 580, 728 |
| NspI | RCATGY | 2 cut(s) | 1104, 1394 |
| PagI | TCATGA | 1 cut(s) | 1348 |
| PasI | CCCWGGG | 1 cut(s) | 712 |
| PceI | AGGCCT | 2 cut(s) | 351, 666 |
| PfeI | GAWTC | 1 cut(s) | 1377 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 939 |
| PleI | GAGTC | 1 cut(s) | 168 |
| PpsI | GAGTC | 1 cut(s) | 168 |
| Ppu21I | YACGTR | 1 cut(s) | 782 |
| PshBI | ATTAAT | 2 cut(s) | 72, 120 |
| Psp124BI | GAGCTC | 2 cut(s) | 342, 657 |
| Psp6I | CCWGG | 1 cut(s) | 711 |
| PspEI | GGTNACC | 2 cut(s) | 265, 580 |
| PspGI | CCWGG | 1 cut(s) | 711 |
| PspN4I | GGNNCC | 7 cut(s) | 157, 170, 324, 436, 437, 486, 639 |
| PspOMI | GGGCCC | 3 cut(s) | 168, 435, 484 |
| RsaI | GTAC | 5 cut(s) | 672, 784, 930, 1099, 1389 |
| RsaNI | GTAC | 5 cut(s) | 671, 783, 929, 1098, 1388 |
| SacI | GAGCTC | 2 cut(s) | 342, 657 |
| Sau3AI | GATC | 3 cut(s) | 387, 472, 702 |
| SchI | GAGTC | 1 cut(s) | 168 |
| ScrFI | CCNGG | 9 cut(s) | 144, 149, 150, 166, 167, 460, 482, 483, 713 |
| SduI | GDGCHC | 5 cut(s) | 172, 342, 439, 488, 657 |
| SetI | ASST | 7 cut(s) | 342, 364, 657, 679, 784, 1033, 1330 |
| SfaNI | GCATC | 1 cut(s) | 1074 |
| SfcI | CTRYAG | 1 cut(s) | 1425 |
| SinI | GGWCC | 2 cut(s) | 61, 156 |
| SmaI | CCCGGG | 3 cut(s) | 150, 167, 483 |
| SnaBI | TACGTA | 1 cut(s) | 782 |
| SrfI | GCCCGGGC | 1 cut(s) | 150 |
| SseBI | AGGCCT | 2 cut(s) | 351, 666 |
| SsiI | CCGC | 6 cut(s) | 153, 201, 470, 488, 516, 1063 |
| SspI | AATATT | 3 cut(s) | 54, 70, 1185 |
| SspMI | CTAG | 4 cut(s) | 287, 359, 602, 674 |
| SstI | GAGCTC | 2 cut(s) | 342, 657 |
| StuI | AGGCCT | 2 cut(s) | 351, 666 |
| StyD4I | CCNGG | 9 cut(s) | 142, 147, 148, 164, 165, 458, 480, 481, 711 |
| StyI | CCWWGG | 1 cut(s) | 1027 |
| TaaI | ACNGT | 6 cut(s) | 185, 227, 500, 542, 1307, 1426 |
| TaiI | ACGT | 2 cut(s) | 784, 1330 |
| TaqI | TCGA | 2 cut(s) | 1006, 1375 |
| TaqII | GACCGA | 1 cut(s) | 49 |
| TatI | WGTACW | 1 cut(s) | 1097 |
| TfiI | GAWTC | 1 cut(s) | 1377 |
| TscAI | CASTG | 6 cut(s) | 29, 266, 340, 655, 1145, 1420 |
| TseFI | GTSAC | 6 cut(s) | 135, 265, 413, 451, 580, 728 |
| Tsp45I | GTSAC | 6 cut(s) | 135, 265, 413, 451, 580, 728 |
| TspDTI | ATGAA | 7 cut(s) | 90, 121, 795, 984, 1212, 1349, 1365 |
| TspGWI | ACGGA | 2 cut(s) | 335, 650 |
| TspMI | CCCGGG | 3 cut(s) | 148, 165, 481 |
| TspRI | CASTG | 6 cut(s) | 29, 266, 340, 655, 1145, 1420 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 939 |
| VpaK11BI | GGWCC | 2 cut(s) | 61, 156 |
| VspI | ATTAAT | 2 cut(s) | 72, 120 |
| XapI | RAATTY | 6 cut(s) | 14, 760, 801, 859, 992, 1277 |
| XceI | RCATGY | 2 cut(s) | 1104, 1394 |
| XmaI | CCCGGG | 3 cut(s) | 148, 165, 481 |
| XspI | CTAG | 4 cut(s) | 287, 359, 602, 674 |