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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 868 |
| AccB1I | GGYRCC | 1 cut(s) | 264 |
| AccBSI | CCGCTC | 4 cut(s) | 780, 1024, 1264, 1402 |
| AccI | GTMKAC | 1 cut(s) | 545 |
| AccII | CGCG | 1 cut(s) | 1375 |
| AclWI | GGATC | 7 cut(s) | 8, 596, 644, 668, 1111, 1273, 1622 |
| AcoI | YGGCCR | 3 cut(s) | 843, 1087, 1376 |
| AcuI | CTGAAG | 1 cut(s) | 1519 |
| AcyI | GRCGYC | 1 cut(s) | 865 |
| AfaI | GTAC | 1 cut(s) | 279 |
| AflII | CTTAAG | 1 cut(s) | 631 |
| AjnI | CCWGG | 7 cut(s) | 663, 840, 1084, 1309, 1378, 1393, 1623 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 418, 450 |
| AleI | CACNNNNGTG | 1 cut(s) | 644 |
| AluBI | AGCT | 7 cut(s) | 208, 443, 692, 927, 1167, 1430, 1567 |
| AluI | AGCT | 7 cut(s) | 208, 443, 692, 927, 1167, 1430, 1567 |
| Alw21I | GWGCWC | 2 cut(s) | 210, 1569 |
| AlwI | GGATC | 7 cut(s) | 8, 596, 644, 668, 1111, 1273, 1622 |
| Ama87I | CYCGRG | 7 cut(s) | 34, 785, 802, 1029, 1046, 1269, 1286 |
| ApaI | GGGCCC | 4 cut(s) | 41, 786, 1030, 1270 |
| AseI | ATTAAT | 1 cut(s) | 576 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 794, 1038 |
| AspLEI | GCGC | 1 cut(s) | 586 |
| AsuHPI | GGTGA | 3 cut(s) | 127, 1486, 1640 |
| AsuII | TTCGAA | 3 cut(s) | 713, 956, 1196 |
| AvaI | CYCGRG | 7 cut(s) | 34, 785, 802, 1029, 1046, 1269, 1286 |
| AvaII | GGWCC | 4 cut(s) | 25, 870, 1094, 1349 |
| AxyI | CCTNAGG | 2 cut(s) | 876, 1343 |
| BaeGI | GKGCMC | 4 cut(s) | 41, 786, 1030, 1270 |
| BanI | GGYRCC | 1 cut(s) | 264 |
| BanII | GRGCYC | 6 cut(s) | 41, 210, 786, 1030, 1270, 1569 |
| BauI | CACGAG | 6 cut(s) | 114, 221, 910, 1150, 1473, 1580 |
| Bbv12I | GWGCWC | 2 cut(s) | 210, 1569 |
| BccI | CCATC | 7 cut(s) | 147, 230, 904, 986, 1144, 1226, 1506 |
| BceAI | ACGGC | 2 cut(s) | 830, 1074 |
| BciT130I | CCWGG | 7 cut(s) | 665, 842, 1086, 1311, 1380, 1395, 1625 |
| BfmI | CTRYAG | 1 cut(s) | 412 |
| BfoI | RGCGCY | 1 cut(s) | 587 |
| BfrI | CTTAAG | 1 cut(s) | 631 |
| BglII | AGATCT | 1 cut(s) | 357 |
| BisI | GCNGC | 2 cut(s) | 365, 1376 |
| BlsI | GCNGC | 2 cut(s) | 366, 1377 |
| BmcAI | AGTACT | 1 cut(s) | 279 |
| Bme18I | GGWCC | 4 cut(s) | 25, 870, 1094, 1349 |
| BmeT110I | CYCGRG | 7 cut(s) | 34, 785, 802, 1029, 1046, 1269, 1286 |
| BmrI | ACTGGG | 2 cut(s) | 121, 1480 |
| BmuI | ACTGGG | 2 cut(s) | 121, 1480 |
| Bpu10I | CCTNAGC | 2 cut(s) | 767, 1011 |
| Bpu14I | TTCGAA | 3 cut(s) | 713, 956, 1196 |
| BsaHI | GRCGYC | 1 cut(s) | 865 |
| BsaWI | WCCGGW | 1 cut(s) | 270 |
| Bse1I | ACTGG | 7 cut(s) | 127, 201, 571, 936, 1176, 1486, 1560 |
| Bse21I | CCTNAGG | 2 cut(s) | 876, 1343 |
| BseBI | CCWGG | 7 cut(s) | 665, 842, 1086, 1311, 1380, 1395, 1625 |
| BseNI | ACTGG | 7 cut(s) | 127, 201, 571, 936, 1176, 1486, 1560 |
| BseSI | GKGCMC | 4 cut(s) | 41, 786, 1030, 1270 |
| BsgI | GTGCAG | 1 cut(s) | 326 |
| Bsh1236I | CGCG | 1 cut(s) | 1375 |
| BshNI | GGYRCC | 1 cut(s) | 264 |
| BsiHKAI | GWGCWC | 2 cut(s) | 210, 1569 |
| BsiHKCI | CYCGRG | 7 cut(s) | 34, 785, 802, 1029, 1046, 1269, 1286 |
| BslFI | GGGAC | 2 cut(s) | 38, 1080 |
| BsmFI | GGGAC | 2 cut(s) | 38, 1080 |
| BsoBI | CYCGRG | 7 cut(s) | 34, 785, 802, 1029, 1046, 1269, 1286 |
| Bsp119I | TTCGAA | 3 cut(s) | 713, 956, 1196 |
| Bsp120I | GGGCCC | 4 cut(s) | 37, 782, 1026, 1266 |
| Bsp1286I | GDGCHC | 6 cut(s) | 41, 210, 786, 1030, 1270, 1569 |
| Bsp143I | GATC | 9 cut(s) | 13, 357, 601, 613, 636, 673, 1116, 1278, 1614 |
| BspFNI | CGCG | 1 cut(s) | 1375 |
| BspMAI | CTGCAG | 1 cut(s) | 416 |
| BspPI | GGATC | 7 cut(s) | 8, 596, 644, 668, 1111, 1273, 1622 |
| BspT104I | TTCGAA | 3 cut(s) | 713, 956, 1196 |
| BspT107I | GGYRCC | 1 cut(s) | 264 |
| BspTI | CTTAAG | 1 cut(s) | 631 |
| BsrBI | CCGCTC | 4 cut(s) | 780, 1024, 1264, 1402 |
| BsrI | ACTGG | 7 cut(s) | 127, 201, 571, 936, 1176, 1486, 1560 |
| BssMI | GATC | 9 cut(s) | 13, 357, 601, 613, 636, 673, 1116, 1278, 1614 |
| BssNAI | GTATAC | 1 cut(s) | 546 |
| BssNI | GRCGYC | 1 cut(s) | 865 |
| BssSI | CACGAG | 6 cut(s) | 114, 221, 910, 1150, 1473, 1580 |
| BssT1I | CCWWGG | 1 cut(s) | 1107 |
| Bst1107I | GTATAC | 1 cut(s) | 546 |
| Bst2BI | CACGAG | 6 cut(s) | 114, 221, 910, 1150, 1473, 1580 |
| Bst2UI | CCWGG | 7 cut(s) | 665, 842, 1086, 1311, 1380, 1395, 1625 |
| Bst4CI | ACNGT | 7 cut(s) | 53, 95, 326, 550, 1255, 1412, 1454 |
| Bst6I | CTCTTC | 2 cut(s) | 722, 1526 |
| BstACI | GRCGYC | 1 cut(s) | 865 |
| BstAFI | CTTAAG | 1 cut(s) | 631 |
| BstBI | TTCGAA | 3 cut(s) | 713, 956, 1196 |
| BstC8I | GCNNGC | 4 cut(s) | 782, 1026, 1266, 1400 |
| BstDEI | CTNAG | 4 cut(s) | 767, 876, 1011, 1343 |
| BstDSI | CCRYGG | 2 cut(s) | 846, 1090 |
| BstEII | GGTNACC | 2 cut(s) | 133, 1492 |
| BstFNI | CGCG | 1 cut(s) | 1375 |
| BstH2I | RGCGCY | 1 cut(s) | 587 |
| BstHHI | GCGC | 1 cut(s) | 586 |
| BstKTI | GATC | 9 cut(s) | 16, 360, 604, 616, 639, 676, 1119, 1281, 1617 |
| BstMBI | GATC | 9 cut(s) | 13, 357, 601, 613, 636, 673, 1116, 1278, 1614 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 449, 790, 1034 |
| BstNI | CCWGG | 7 cut(s) | 665, 842, 1086, 1311, 1380, 1395, 1625 |
| BstPI | GGTNACC | 2 cut(s) | 133, 1492 |
| BstSFI | CTRYAG | 1 cut(s) | 412 |
| BstSLI | GKGCMC | 4 cut(s) | 41, 786, 1030, 1270 |
| BstUI | CGCG | 1 cut(s) | 1375 |
| BstX2I | RGATCY | 1 cut(s) | 357 |
| BstYI | RGATCY | 1 cut(s) | 357 |
| BstZ17I | GTATAC | 1 cut(s) | 546 |
| Bsu36I | CCTNAGG | 2 cut(s) | 876, 1343 |
| BtgI | CCRYGG | 2 cut(s) | 846, 1090 |
| BtgZI | GCGATG | 2 cut(s) | 643, 1330 |
| BtsIMutI | CAGTG | 7 cut(s) | 134, 208, 929, 1169, 1450, 1493, 1567 |
| Cac8I | GCNNGC | 4 cut(s) | 782, 1026, 1266, 1400 |
| CfoI | GCGC | 1 cut(s) | 586 |
| Cfr9I | CCCGGG | 5 cut(s) | 34, 785, 1029, 1269, 1286 |
| Csp6I | GTAC | 1 cut(s) | 278 |
| CviAII | CATG | 6 cut(s) | 143, 644, 763, 1007, 1229, 1502 |
| CviQI | GTAC | 1 cut(s) | 278 |
| DdeI | CTNAG | 4 cut(s) | 767, 876, 1011, 1343 |
| DpnI | GATC | 9 cut(s) | 15, 359, 603, 615, 638, 675, 1118, 1280, 1616 |
| DpnII | GATC | 9 cut(s) | 13, 357, 601, 613, 636, 673, 1116, 1278, 1614 |
| EaeI | YGGCCR | 3 cut(s) | 843, 1087, 1376 |
| Eam1104I | CTCTTC | 2 cut(s) | 722, 1526 |
| EarI | CTCTTC | 2 cut(s) | 722, 1526 |
| EciI | GGCGGA | 3 cut(s) | 439, 1011, 1251 |
| Ecl136II | GAGCTC | 2 cut(s) | 208, 1567 |
| Eco130I | CCWWGG | 1 cut(s) | 1107 |
| Eco147I | AGGCCT | 5 cut(s) | 219, 255, 916, 1156, 1578 |
| Eco24I | GRGCYC | 6 cut(s) | 41, 210, 786, 1030, 1270, 1569 |
| Eco47I | GGWCC | 4 cut(s) | 25, 870, 1094, 1349 |
| Eco53kI | GAGCTC | 2 cut(s) | 208, 1567 |
| Eco57I | CTGAAG | 1 cut(s) | 1519 |
| Eco81I | CCTNAGG | 2 cut(s) | 876, 1343 |
| Eco88I | CYCGRG | 7 cut(s) | 34, 785, 802, 1029, 1046, 1269, 1286 |
| Eco91I | GGTNACC | 2 cut(s) | 133, 1492 |
| EcoICRI | GAGCTC | 2 cut(s) | 208, 1567 |
| EcoO109I | RGGNCCY | 1 cut(s) | 627 |
| EcoO65I | GGTNACC | 2 cut(s) | 133, 1492 |
| EcoRII | CCWGG | 7 cut(s) | 663, 840, 1084, 1309, 1378, 1393, 1623 |
| EcoT14I | CCWWGG | 1 cut(s) | 1107 |
| EcoT38I | GRGCYC | 6 cut(s) | 41, 210, 786, 1030, 1270, 1569 |
| ErhI | CCWWGG | 1 cut(s) | 1107 |
| FaeI | CATG | 6 cut(s) | 146, 647, 766, 1010, 1232, 1505 |
| FaqI | GGGAC | 2 cut(s) | 38, 1080 |
| FatI | CATG | 6 cut(s) | 142, 643, 762, 1006, 1228, 1501 |
| FauI | CCCGC | 5 cut(s) | 531, 773, 1017, 1257, 1407 |
| FblI | GTMKAC | 1 cut(s) | 545 |
| Fnu4HI | GCNGC | 2 cut(s) | 365, 1376 |
| FokI | GGATG | 9 cut(s) | 248, 637, 824, 883, 1068, 1123, 1308, 1336, 1607 |
| FriOI | GRGCYC | 6 cut(s) | 41, 210, 786, 1030, 1270, 1569 |
| Fsp4HI | GCNGC | 2 cut(s) | 365, 1376 |
| GlaI | GCGC | 1 cut(s) | 585 |
| GluI | GCNGC | 2 cut(s) | 365, 1376 |
| HaeII | RGCGCY | 1 cut(s) | 587 |
| HhaI | GCGC | 1 cut(s) | 586 |
| Hin1I | GRCGYC | 1 cut(s) | 865 |
| Hin1II | CATG | 6 cut(s) | 146, 647, 766, 1010, 1232, 1505 |
| Hin6I | GCGC | 1 cut(s) | 584 |
| HinP1I | GCGC | 1 cut(s) | 584 |
| HinfI | GANTC | 3 cut(s) | 420, 795, 1039 |
| HphI | GGTGA | 3 cut(s) | 127, 1486, 1640 |
| Hpy166II | GTNNAC | 2 cut(s) | 546, 1696 |
| Hpy188III | TCNNGA | 3 cut(s) | 11, 114, 1473 |
| Hpy8I | GTNNAC | 2 cut(s) | 546, 1696 |
| Hpy99I | CGWCG | 2 cut(s) | 870, 1366 |
| HpyAV | CCTTC | 2 cut(s) | 172, 406 |
| HpyCH4III | ACNGT | 7 cut(s) | 53, 95, 326, 550, 1255, 1412, 1454 |
| HpyCH4IV | ACGT | 2 cut(s) | 865, 1355 |
| HpyCH4V | TGCA | 2 cut(s) | 307, 414 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 449, 790, 1034 |
| HpyF3I | CTNAG | 4 cut(s) | 767, 876, 1011, 1343 |
| HpySE526I | ACGT | 2 cut(s) | 865, 1355 |
| Hsp92I | GRCGYC | 1 cut(s) | 865 |
| Hsp92II | CATG | 6 cut(s) | 146, 647, 766, 1010, 1232, 1505 |
| HspAI | GCGC | 1 cut(s) | 584 |
| Kzo9I | GATC | 9 cut(s) | 13, 357, 601, 613, 636, 673, 1116, 1278, 1614 |
| LmnI | GCTCC | 6 cut(s) | 213, 777, 1021, 1261, 1407, 1572 |
| MaeII | ACGT | 2 cut(s) | 865, 1355 |
| MaeIII | GTNAC | 9 cut(s) | 3, 133, 320, 646, 814, 1058, 1298, 1326, 1492 |
| MalI | GATC | 9 cut(s) | 15, 359, 603, 615, 638, 675, 1118, 1280, 1616 |
| MbiI | CCGCTC | 4 cut(s) | 780, 1024, 1264, 1402 |
| MboI | GATC | 9 cut(s) | 13, 357, 601, 613, 636, 673, 1116, 1278, 1614 |
| MboII | GAAGA | 7 cut(s) | 391, 394, 429, 482, 485, 739, 1513 |
| MflI | RGATCY | 1 cut(s) | 357 |
| MhlI | GDGCHC | 6 cut(s) | 41, 210, 786, 1030, 1270, 1569 |
| MluCI | AATT | 6 cut(s) | 287, 430, 819, 1063, 1657, 1683 |
| MmeI | TCCRAC | 4 cut(s) | 587, 848, 1359, 1376 |
| MroXI | GAANNNNTTC | 2 cut(s) | 794, 1038 |
| MseI | TTAA | 8 cut(s) | 171, 534, 576, 632, 719, 962, 1202, 1530 |
| MslI | CAYNNNNRTG | 1 cut(s) | 644 |
| MspCI | CTTAAG | 1 cut(s) | 631 |
| MvaI | CCWGG | 7 cut(s) | 665, 842, 1086, 1311, 1380, 1395, 1625 |
| MvnI | CGCG | 1 cut(s) | 1375 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 449, 790, 1034 |
| NdeII | GATC | 9 cut(s) | 13, 357, 601, 613, 636, 673, 1116, 1278, 1614 |
| NlaIII | CATG | 6 cut(s) | 146, 647, 766, 1010, 1232, 1505 |
| NmuCI | GTSAC | 9 cut(s) | 3, 133, 320, 646, 814, 1058, 1298, 1326, 1492 |
| NspV | TTCGAA | 3 cut(s) | 713, 956, 1196 |
| OliI | CACNNNNGTG | 1 cut(s) | 644 |
| PasI | CCCWGGG | 3 cut(s) | 664, 1310, 1624 |
| PceI | AGGCCT | 5 cut(s) | 219, 255, 916, 1156, 1578 |
| PdmI | GAANNNNTTC | 2 cut(s) | 794, 1038 |
| PfeI | GAWTC | 3 cut(s) | 420, 795, 1039 |
| PkrI | GCNGC | 2 cut(s) | 366, 1377 |
| PshBI | ATTAAT | 1 cut(s) | 576 |
| Psp124BI | GAGCTC | 2 cut(s) | 210, 1569 |
| Psp6I | CCWGG | 7 cut(s) | 663, 840, 1084, 1309, 1378, 1393, 1623 |
| PspEI | GGTNACC | 2 cut(s) | 133, 1492 |
| PspGI | CCWGG | 7 cut(s) | 663, 840, 1084, 1309, 1378, 1393, 1623 |
| PspOMI | GGGCCC | 4 cut(s) | 37, 782, 1026, 1266 |
| PstI | CTGCAG | 1 cut(s) | 416 |
| PsuI | RGATCY | 1 cut(s) | 357 |
| RsaI | GTAC | 1 cut(s) | 279 |
| RsaNI | GTAC | 1 cut(s) | 278 |
| RseI | CAYNNNNRTG | 1 cut(s) | 644 |
| SacI | GAGCTC | 2 cut(s) | 210, 1569 |
| SaqAI | TTAA | 8 cut(s) | 171, 534, 576, 632, 719, 962, 1202, 1530 |
| SatI | GCNGC | 2 cut(s) | 365, 1376 |
| Sau3AI | GATC | 9 cut(s) | 13, 357, 601, 613, 636, 673, 1116, 1278, 1614 |
| ScaI | AGTACT | 1 cut(s) | 279 |
| SduI | GDGCHC | 6 cut(s) | 41, 210, 786, 1030, 1270, 1569 |
| SfcI | CTRYAG | 1 cut(s) | 412 |
| SfuI | TTCGAA | 3 cut(s) | 713, 956, 1196 |
| SinI | GGWCC | 4 cut(s) | 25, 870, 1094, 1349 |
| SmaI | CCCGGG | 5 cut(s) | 36, 787, 1031, 1271, 1288 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 644 |
| SmlI | CTYRAG | 1 cut(s) | 631 |
| SmoI | CTYRAG | 1 cut(s) | 631 |
| Sse9I | AATT | 6 cut(s) | 287, 430, 819, 1063, 1657, 1683 |
| SseBI | AGGCCT | 5 cut(s) | 219, 255, 916, 1156, 1578 |
| SstI | GAGCTC | 2 cut(s) | 210, 1569 |
| StuI | AGGCCT | 5 cut(s) | 219, 255, 916, 1156, 1578 |
| StyI | CCWWGG | 1 cut(s) | 1107 |
| TaaI | ACNGT | 7 cut(s) | 53, 95, 326, 550, 1255, 1412, 1454 |
| TaiI | ACGT | 2 cut(s) | 868, 1358 |
| TaqI | TCGA | 3 cut(s) | 713, 956, 1196 |
| TasI | AATT | 6 cut(s) | 287, 430, 819, 1063, 1657, 1683 |
| TatI | WGTACW | 1 cut(s) | 277 |
| TauI | GCSGC | 2 cut(s) | 367, 1378 |
| TfiI | GAWTC | 3 cut(s) | 420, 795, 1039 |
| Tru1I | TTAA | 8 cut(s) | 171, 534, 576, 632, 719, 962, 1202, 1530 |
| Tru9I | TTAA | 8 cut(s) | 171, 534, 576, 632, 719, 962, 1202, 1530 |
| TscAI | CASTG | 7 cut(s) | 134, 208, 936, 1176, 1457, 1493, 1567 |
| TseFI | GTSAC | 9 cut(s) | 3, 133, 320, 646, 814, 1058, 1298, 1326, 1492 |
| Tsp45I | GTSAC | 9 cut(s) | 3, 133, 320, 646, 814, 1058, 1298, 1326, 1492 |
| TspDTI | ATGAA | 2 cut(s) | 329, 1669 |
| TspGWI | ACGGA | 5 cut(s) | 203, 691, 934, 1174, 1562 |
| TspMI | CCCGGG | 5 cut(s) | 34, 785, 1029, 1269, 1286 |
| TspRI | CASTG | 7 cut(s) | 134, 208, 936, 1176, 1457, 1493, 1567 |
| Vha464I | CTTAAG | 1 cut(s) | 631 |
| VpaK11BI | GGWCC | 4 cut(s) | 25, 870, 1094, 1349 |
| VspI | ATTAAT | 1 cut(s) | 576 |
| XmaI | CCCGGG | 5 cut(s) | 34, 785, 1029, 1269, 1286 |
| XmiI | GTMKAC | 1 cut(s) | 545 |
| XmnI | GAANNNNTTC | 2 cut(s) | 794, 1038 |
| ZraI | GACGTC | 1 cut(s) | 866 |
| ZrmI | AGTACT | 1 cut(s) | 279 |