pycom01g11810

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000158
Physical Location & Seq
Forward (+)
12829183 .. 12833524
4342 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11810.5

Sequence Viewer

Length: 3174 bp
ATGTCAACCAACTTAACATCTAGTTTTTCTTTGATGAAATGTCTATCCACCTTAACATTATCACAGTATAACAACATAGACCTTTTTGGTTTAAACCTTATTTCAGTGAGTAGAATCCGAAGCCTTAGAAGCTCACAAATGCCATGTGCCATTCCTCTGTACTCAACCTTGGCCGAAGACTTTGCCACCACATTTTGCTTCTTACTTCTCCAAGTCACAAGATTACCAGCTACAAACGTAAAGTATCCCGACGTAGATCGCCGATCAATGATATTTCTAACCCAATATGCATCGGTATACCCATTCACTTCCATATGCCCATGTTGTACATCAATCTTTTTCATGGAGCTCCCTTTAAGTAACTCAGAATCCGCATTACTGTTGTCATCGATAAATAAATCAGTCGCCCTACCAACCGTTGATACCTTTCCCTATTCGTTGGGATTTGATCCTGATAAATTGCTAGATGATGATTTTTTTGGGACAAATAATCCAATACTTTCTCCCAGGAAGTATTTAAGTTCCCCAAGTTCTTTCATCTCAAACTCAAAATACAATTACCTCTGTAAATGTTCGATTTCCATTGTATCATCACTTGTGACAATCATATCATCTACATATATGATAGGTAGAGTTACCTTACCATCATTGCACTTGATTAACAAAGTATGGTCTGAGTTTCCCAGTCGATACCTATATTTCTTCATCATCTGGGTGAACCACCTAAACCACGCTTTGGGTGATTGTTTAAGGCCATACAGTGCCTTTCGAACCATGTACACTTTTTCCTCTAAATCTCCATGCAGAAAAGCTTTTTTAACATCAAAATGTCTTAGAGCTACCCCAAAAGTTTGGGTAAACCCCTTGGCAAGTAACCTTGCCTTGTACCTATCAATTGTTCCATCTGCCTTATGCTTAATAGTGAACACCCACTTGCATCCCACTGGTTTCTTTCCTTTAGGGAGTGAAACCACACTCAATATATTATTTTTCTGTAATGCTTCCATTTTAACTTACATTACCTCTGTCCATTTCGGATCCTTCAAGGCTTCTTCCACTCTAATTTTGGTGAGAGTTGTTGAGTGGAGACGTAGTTTGCAATGGGGTACCACAACTTTTCTTCTAGAGAGTACTTGCCTGGTGGTTTTCCTCAATTTTCTCTTACCTCAGAGATATCCGTTGAATCATGGACGTGTACTTGAGGAGTATGAGGCGGGCTGTTATGTTCAACTTCATTGGTGGTGTTATGTTGCCCATTTAACTTTGGATGCCCACTCGGTTCTAATAAACGCCAAATTTGGCCCACTTGGGCTGTCGACAACAACCTCATCATTCTGCCCACTTGGGCTGTCAGCGACAACGTCATGGTTATGCCTACTTGGGCTGTTGGCAGAATCTAGGTGCTCACTTGGGCTGTTATACTCTGGACAGTTACACGACCCAACAGTGGTCCTACTTGGACTAACACGGTCATTAGAAGGTAACATCCATGGTGACGTACGTCTGTCGAGTAGATGGATGATAACATTGATATCCCTTTTGTTGAGGACTAAAGCCAATGAATACACACCGCACTGCACATGGATCAAGCTTGCTTCTTTGATTTTTTGTGAAGATGGACATATGCCACACATCCAAAAACTCGGGGTTCGAGTTGAAGAGTGGAAGGGAGCGAAACATGTTCAGCAAGCACGGCCAATGGGAGCCCTGCATTTTGGTGTATTGTATGTGTTATTGATTGATATGATTGTGGAATGGTGGTTGATGTGTAGGATAGTACTCTATGTTTTCTTGAACTACAAATGGCTTGATCCCGTCGGAGGGTACGTAGGTAGTCTAACAAAGAGGTTAGATGCAGCCATAAAGTATATGAAAAATGTGACATCCCACATCCACAAGGCCTTTTGGGAGCTCACTGGCTTTAGGTTCCATATGAACTTCGAAGTTAATGGGAAGTTGCTCGTGAGTTCCCAAAAACAAAACTGTGAGGGAATGGTAAGCCTAAAGCGGACAATATCGTGCTACGGTGGTGGAGTAGGCCCGGGATGTTCGATCCACCCCGGGCCGGGATGTAACAATTGGTATCAGAGCCTAACCCTGGCCGTGGTGTGCCGACGAGGATGTCGGGCCCTTAAGGGGGGTGGATTATTCCCATCCCTACCTAGCACGAGGCCTTTTGGGAGCTCACTGGCTTCGGGTTCCCCCATGATGGGTGACCCACTGGGAAGTTCCCAAAGCGGACAATATCGTGCTACGGTGGTGGACTTAGCCCGGGAAGTGATCCACCCCGGGCGGGGATGTGACAAAAAATTACCAATTCGAATCTGGAGTTGTGCTTTGTCTATATCCCGGACACGTTTGATCCTGGACATACGTCGAGATCAGGGTAATGAAAGTTTACTTGTTTATAATAGAGAAAATAACTATGGGGTTTTACTTGGCCTTACTTGGGCACAAGTAAGACTCTGTAGTTACAGTTCATTTGGCGTTACAACTGCTGACAATAATCATCCTTTAGGCCCCTTGTTTTGGCCTGTCGAGAATTGCTTTCACGACATTGGCAATGCGAACTTTGACATGTCTATAGAGAAAAGAGTTTTGTGGCATACATTAGTTTCATCAGTGAGGATTGACTTGGGATGTCTTGGTCTAAATTTATTATTGCGTAGGTTTGTTTGGACTCTTGCTTTTAGCCTCAGTGCTATTAGACCCACCATATTCTCTTATCTTCCCATCTACATTATAATCCCACCCATCACAAAAAAGTTAAAAATTAAAATATTTAAATTATTTAGAAGAATAAATATTAGAGTGCTCATAAACCCAGTTAAGCCTTCACTAATCGCCAAGGTCTTTCCTTCCGATTTTTATTCTAAACAAAATTCCAAAAGTATGATTGAAATGAGGGATAAACAAACTCATTCTCTATTAAACTCCTTTCCTTCGCCCTCCGTTGCATCTTACTCCATAACCTACCTTGATCCCTGCCCACGACCACCCCTCCTCCTTTTCTCTGTCAATCTCCCTTGTCTGCTCTTTGACCACCCCCATGTCAAAGAACACAAAATACACACACACACACACACACACACACACACACACACACACACACACACACACACAAAGCAACAACCTCAAGAAGCTCACGAAATCAAATCCAAACAACCTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

1058

Amino Acids

119.05

Weight (kDa)

9.33

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2409, 2744
AasI GACNNNNNNGTC 1 cut(s) 2121
Acc65I GGTACC 1 cut(s) 1106
AccB1I GGYRCC 1 cut(s) 1106
AccB7I CCANNNNNTGG 1 cut(s) 736
AccI GTMKAC 2 cut(s) 297, 1316
AciI CCGC 6 cut(s) 372, 1214, 1571, 2008, 2238, 2293
AclWI GGATC 9 cut(s) 443, 1032, 1045, 1592, 1805, 2047, 2275, 2356, 2975
AcoI YGGCCR 3 cut(s) 171, 1694, 2100
AcsI RAATTY 3 cut(s) 1295, 2653, 2881
AflII CTTAAG 1 cut(s) 2132
AflIII ACRYGT 4 cut(s) 1192, 1678, 2354, 2577
AgsI TTSAA 6 cut(s) 1045, 1183, 1229, 1658, 1795, 2900
AjiI CACGTC 1 cut(s) 1193
AjnI CCWGG 4 cut(s) 506, 1137, 2097, 2364
AluBI AGCT 9 cut(s) 132, 230, 349, 812, 839, 1591, 1912, 2184, 3143
AluI AGCT 9 cut(s) 132, 230, 349, 812, 839, 1591, 1912, 2184, 3143
Alw21I GWGCWC 5 cut(s) 351, 1406, 1914, 2186, 2817
Alw26I GTCTC 1 cut(s) 1081
AlwI GGATC 9 cut(s) 443, 1032, 1045, 1592, 1805, 2047, 2275, 2356, 2975
Ama87I CYCGRG 5 cut(s) 1643, 2041, 2060, 2271, 2288
ApaI GGGCCC 1 cut(s) 2131
ApeKI GCWGC 1 cut(s) 1856
ApoI RAATTY 3 cut(s) 1295, 2653, 2881
Asp718I GGTACC 1 cut(s) 1106
AspS9I GGNCC 7 cut(s) 1301, 1450, 2039, 2063, 2127, 2128, 2519
AsuHPI GGTGA 5 cut(s) 727, 752, 1081, 1505, 2225
AsuII TTCGAA 3 cut(s) 769, 1941, 2320
AvaI CYCGRG 5 cut(s) 1643, 2041, 2060, 2271, 2288
AvaII GGWCC 1 cut(s) 1450
BaeGI GKGCMC 2 cut(s) 2131, 2455
BaeI ACNNNNGTAYC 2 cut(s) 1816, 1849
BamHI GGATCC 1 cut(s) 1037
BanI GGYRCC 1 cut(s) 1106
BanII GRGCYC 5 cut(s) 351, 1708, 1914, 2131, 2186
BauI CACGAG 2 cut(s) 1961, 2167
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 5 cut(s) 351, 1406, 1914, 2186, 2817
BbvI GCAGC 1 cut(s) 1868
BccI CCATC 8 cut(s) 652, 910, 1509, 1610, 2161, 2203, 2741, 2762
BceAI ACGGC 2 cut(s) 1709, 2087
BcgI CGANNNNNNTGC 2 cut(s) 164, 198
BciT130I CCWGG 4 cut(s) 508, 1139, 2099, 2366
BciVI GTATCC 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 1081
BfaI CTAG 5 cut(s) 21, 464, 1124, 1398, 2163
BfmI CTRYAG 2 cut(s) 2467, 2583
BfrI CTTAAG 1 cut(s) 2132
BfuI GTATCC 1 cut(s) 255
BisI GCNGC 1 cut(s) 1857
BlsI GCNGC 1 cut(s) 1858
BmcAI AGTACT 2 cut(s) 1132, 1779
Bme18I GGWCC 1 cut(s) 1450
BmeT110I CYCGRG 5 cut(s) 1643, 2041, 2060, 2271, 2288
BmgBI CACGTC 1 cut(s) 1193
BmgT120I GGNCC 7 cut(s) 1301, 1450, 2039, 2063, 2127, 2128, 2519
BmiI GGNNCC 7 cut(s) 1039, 1108, 1705, 1928, 2129, 2200, 2521
BmrI ACTGGG 3 cut(s) 678, 2231, 2819
BmsI GCATC 5 cut(s) 299, 946, 1258, 1843, 2966
BmuI ACTGGG 3 cut(s) 678, 2231, 2819
BoxI GACNNNNGTC 2 cut(s) 1500, 2373
BpiI GAAGAC 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 2347
Bpu14I TTCGAA 3 cut(s) 769, 1941, 2320
BpuEI CTTGAG 2 cut(s) 1220, 3120
Bsa29I ATCGAT 1 cut(s) 389
BsaAI YACGTR 1 cut(s) 1828
BsaXI ACNNNNNCTCC 8 cut(s) 1078, 1108, 1812, 1842, 2985, 2988, 3015, 3018
Bse1I ACTGG 6 cut(s) 684, 949, 1921, 2193, 2226, 2825
Bse3DI GCAATG 3 cut(s) 647, 1106, 2569
BseBI CCWGG 4 cut(s) 508, 1139, 2099, 2366
BseCI ATCGAT 1 cut(s) 389
BseMI GCAATG 3 cut(s) 647, 1106, 2569
BseMII CTCAG 4 cut(s) 378, 666, 1181, 2710
BseNI ACTGG 6 cut(s) 684, 949, 1921, 2193, 2226, 2825
BseRI GAGGAG 2 cut(s) 1217, 2993
BseSI GKGCMC 2 cut(s) 2131, 2455
BseXI GCAGC 1 cut(s) 1868
BsgI GTGCAG 1 cut(s) 1561
BshNI GGYRCC 1 cut(s) 1106
BshVI ATCGAT 1 cut(s) 389
BsiHKAI GWGCWC 5 cut(s) 351, 1406, 1914, 2186, 2817
BsiHKCI CYCGRG 5 cut(s) 1643, 2041, 2060, 2271, 2288
BsiSI CCGG 6 cut(s) 2042, 2061, 2066, 2272, 2289, 2350
BsiWI CGTACG 1 cut(s) 1498
BslFI GGGAC 1 cut(s) 496
BsmAI GTCTC 1 cut(s) 1081
BsmBI CGTCTC 1 cut(s) 1081
BsmFI GGGAC 1 cut(s) 496
BsoBI CYCGRG 5 cut(s) 1643, 2041, 2060, 2271, 2288
Bsp119I TTCGAA 3 cut(s) 769, 1941, 2320
Bsp120I GGGCCC 1 cut(s) 2127
Bsp1286I GDGCHC 8 cut(s) 351, 1406, 1708, 1914, 2131, 2186, 2455, 2817
Bsp1407I TGTACA 2 cut(s) 326, 777
Bsp19I CCATGG 1 cut(s) 1489
BspACI CCGC 6 cut(s) 372, 1214, 1571, 2008, 2238, 2293
BspCNI CTCAG 4 cut(s) 377, 667, 1180, 2709
BspDI ATCGAT 1 cut(s) 389
BspLI GGNNCC 7 cut(s) 1039, 1108, 1705, 1928, 2129, 2200, 2521
BspPI GGATC 9 cut(s) 443, 1032, 1045, 1592, 1805, 2047, 2275, 2356, 2975
BspT104I TTCGAA 3 cut(s) 769, 1941, 2320
BspT107I GGYRCC 1 cut(s) 1106
BspTI CTTAAG 1 cut(s) 2132
BsrDI GCAATG 3 cut(s) 647, 1106, 2569
BsrGI TGTACA 2 cut(s) 326, 777
BsrI ACTGG 6 cut(s) 684, 949, 1921, 2193, 2226, 2825
BssNAI GTATAC 1 cut(s) 298
BssSI CACGAG 2 cut(s) 1961, 2167
BssT1I CCWWGG 4 cut(s) 168, 864, 1489, 2847
Bst1107I GTATAC 1 cut(s) 298
Bst2BI CACGAG 2 cut(s) 1961, 2167
Bst2UI CCWGG 4 cut(s) 508, 1139, 2099, 2366
Bst6I CTCTTC 1 cut(s) 1653
BstAFI CTTAAG 1 cut(s) 2132
BstAUI TGTACA 2 cut(s) 326, 777
BstBAI YACGTR 1 cut(s) 1828
BstBI TTCGAA 3 cut(s) 769, 1941, 2320
BstC8I GCNNGC 3 cut(s) 1216, 1593, 1689
BstDEI CTNAG 7 cut(s) 125, 364, 675, 833, 1167, 2266, 2696
BstDSI CCRYGG 2 cut(s) 1489, 2103
BstEII GGTNACC 1 cut(s) 2213
BstMAI GTCTC 1 cut(s) 1081
BstMWI GCNNNNNNNGC 2 cut(s) 129, 1693
BstNI CCWGG 4 cut(s) 508, 1139, 2099, 2366
BstNSI RCATGY 2 cut(s) 1682, 2581
BstPAI GACNNNNGTC 2 cut(s) 1500, 2373
BstPI GGTNACC 1 cut(s) 2213
BstSFI CTRYAG 2 cut(s) 2467, 2583
BstSLI GKGCMC 2 cut(s) 2131, 2455
BstSNI TACGTA 1 cut(s) 1828
BstV1I GCAGC 1 cut(s) 1868
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 1037
BstXI CCANNNNNNTGG 1 cut(s) 852
BstYI RGATCY 1 cut(s) 1037
BstZ17I GTATAC 1 cut(s) 298
Bsu15I ATCGAT 1 cut(s) 389
BsuI GTATCC 1 cut(s) 255
BsuTUI ATCGAT 1 cut(s) 389
BtgI CCRYGG 2 cut(s) 1489, 2103
BtrI CACGTC 1 cut(s) 1193
BtsI GCAGTG 1 cut(s) 1573
Cac8I GCNNGC 3 cut(s) 1216, 1593, 1689
Cfr13I GGNCC 7 cut(s) 1301, 1450, 2039, 2063, 2127, 2128, 2519
Cfr9I CCCGGG 4 cut(s) 2041, 2060, 2271, 2288
ClaI ATCGAT 1 cut(s) 389
DdeI CTNAG 7 cut(s) 125, 364, 675, 833, 1167, 2266, 2696
DraI TTTAAA 2 cut(s) 93, 2785
DrdI GACNNNNNNGTC 1 cut(s) 2121
DseDI GACNNNNNNGTC 1 cut(s) 2121
EaeI YGGCCR 3 cut(s) 171, 1694, 2100
Eam1104I CTCTTC 1 cut(s) 1653
EarI CTCTTC 1 cut(s) 1653
Ecl136II GAGCTC 3 cut(s) 349, 1912, 2184
Eco105I TACGTA 1 cut(s) 1828
Eco130I CCWWGG 4 cut(s) 168, 864, 1489, 2847
Eco147I AGGCCT 2 cut(s) 1901, 2173
Eco24I GRGCYC 5 cut(s) 351, 1708, 1914, 2131, 2186
Eco32I GATATC 2 cut(s) 1175, 1533
Eco47I GGWCC 1 cut(s) 1450
Eco53kI GAGCTC 3 cut(s) 349, 1912, 2184
Eco88I CYCGRG 5 cut(s) 1643, 2041, 2060, 2271, 2288
Eco91I GGTNACC 1 cut(s) 2213
EcoICRI GAGCTC 3 cut(s) 349, 1912, 2184
EcoO109I RGGNCCY 2 cut(s) 2128, 2519
EcoO65I GGTNACC 1 cut(s) 2213
EcoRII CCWGG 4 cut(s) 506, 1137, 2097, 2364
EcoRV GATATC 2 cut(s) 1175, 1533
EcoT14I CCWWGG 4 cut(s) 168, 864, 1489, 2847
EcoT22I ATGCAT 1 cut(s) 292
EcoT38I GRGCYC 5 cut(s) 351, 1708, 1914, 2131, 2186
ErhI CCWWGG 4 cut(s) 168, 864, 1489, 2847
Esp3I CGTCTC 1 cut(s) 1081
FaqI GGGAC 1 cut(s) 496
FauI CCCGC 2 cut(s) 1207, 2286
FauNDI CATATG 3 cut(s) 314, 1623, 1932
FblI GTMKAC 2 cut(s) 297, 1316
Fnu4HI GCNGC 1 cut(s) 1857
FriOI GRGCYC 5 cut(s) 351, 1708, 1914, 2131, 2186
Fsp4HI GCNGC 1 cut(s) 1857
FspBI CTAG 5 cut(s) 21, 464, 1124, 1398, 2163
GluI GCNGC 1 cut(s) 1857
GsuI CTGGAG 1 cut(s) 2347
HapII CCGG 6 cut(s) 2042, 2061, 2066, 2272, 2289, 2350
HincII GTYRAC 2 cut(s) 6, 1317
HindII GTYRAC 2 cut(s) 6, 1317
HindIII AAGCTT 2 cut(s) 810, 1589
HinfI GANTC 7 cut(s) 114, 368, 1183, 1394, 2322, 2463, 2680
HpaII CCGG 6 cut(s) 2042, 2061, 2066, 2272, 2289, 2350
HphI GGTGA 5 cut(s) 727, 752, 1081, 1505, 2225
Hpy188I TCNGA 8 cut(s) 119, 367, 676, 1037, 1170, 1820, 2088, 2863
Hpy99I CGWCG 4 cut(s) 254, 1820, 2118, 2379
HpyAV CCTTC 6 cut(s) 1051, 1472, 1660, 2844, 2868, 2952
HpyCH4V TGCA 9 cut(s) 290, 652, 804, 937, 1099, 1578, 1711, 1856, 2957
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 1693
HpyF3I CTNAG 7 cut(s) 125, 364, 675, 833, 1167, 2266, 2696
KpnI GGTACC 1 cut(s) 1110
LmnI GCTCC 6 cut(s) 346, 354, 1670, 1703, 1909, 2181
Lsp1109I GCAGC 1 cut(s) 1868
LweI GCATC 5 cut(s) 299, 946, 1258, 1843, 2966
MaeI CTAG 5 cut(s) 21, 464, 1124, 1398, 2163
MboII GAAGA 8 cut(s) 188, 694, 1044, 1112, 1625, 1670, 2720, 2808
MfeI CAATTG 2 cut(s) 894, 2077
MflI RGATCY 1 cut(s) 1037
MhlI GDGCHC 8 cut(s) 351, 1406, 1708, 1914, 2131, 2186, 2455, 2817
MlyI GAGTC 2 cut(s) 2457, 2674
MmeI TCCRAC 1 cut(s) 1798
Mph1103I ATGCAT 1 cut(s) 292
MslI CAYNNNNRTG 6 cut(s) 713, 826, 1191, 1369, 1716, 3048
MspCI CTTAAG 1 cut(s) 2132
MspI CCGG 6 cut(s) 2042, 2061, 2066, 2272, 2289, 2350
MssI GTTTAAAC 1 cut(s) 93
MunI CAATTG 2 cut(s) 894, 2077
MvaI CCWGG 4 cut(s) 508, 1139, 2099, 2366
MwoI GCNNNNNNNGC 2 cut(s) 129, 1693
NcoI CCATGG 1 cut(s) 1489
NdeI CATATG 3 cut(s) 314, 1623, 1932
NlaIV GGNNCC 7 cut(s) 1039, 1108, 1705, 1928, 2129, 2200, 2521
NmuCI GTSAC 6 cut(s) 214, 598, 1493, 1879, 2213, 2300
NsiI ATGCAT 1 cut(s) 292
NspI RCATGY 2 cut(s) 1682, 2581
NspV TTCGAA 3 cut(s) 769, 1941, 2320
PceI AGGCCT 2 cut(s) 1901, 2173
PciI ACATGT 2 cut(s) 1678, 2577
PcsI WCGNNNNNNNCGW 1 cut(s) 1824
PfeI GAWTC 5 cut(s) 114, 368, 1183, 1394, 2322
Pfl23II CGTACG 1 cut(s) 1498
PflFI GACNNNGTC 1 cut(s) 1360
PflMI CCANNNNNTGG 1 cut(s) 736
PfoI TCCNGGA 2 cut(s) 2348, 2364
PkrI GCNGC 1 cut(s) 1858
PleI GAGTC 2 cut(s) 2457, 2674
PmeI GTTTAAAC 1 cut(s) 93
PpsI GAGTC 2 cut(s) 2457, 2674
Ppu21I YACGTR 1 cut(s) 1828
PscI ACATGT 2 cut(s) 1678, 2577
PshAI GACNNNNGTC 2 cut(s) 1500, 2373
PsiI TTATAA 2 cut(s) 2409, 2744
Psp124BI GAGCTC 3 cut(s) 351, 1914, 2186
Psp6I CCWGG 4 cut(s) 506, 1137, 2097, 2364
PspEI GGTNACC 1 cut(s) 2213
PspGI CCWGG 4 cut(s) 506, 1137, 2097, 2364
PspLI CGTACG 1 cut(s) 1498
PspN4I GGNNCC 7 cut(s) 1039, 1108, 1705, 1928, 2129, 2200, 2521
PspOMI GGGCCC 1 cut(s) 2127
PspPI GGNCC 7 cut(s) 1301, 1450, 2039, 2063, 2127, 2128, 2519
PsrI GAACNNNNNNTAC 4 cut(s) 2461, 2493, 3051, 3083
PsuI RGATCY 1 cut(s) 1037
PsyI GACNNNGTC 1 cut(s) 1360
RseI CAYNNNNRTG 6 cut(s) 713, 826, 1191, 1369, 1716, 3048
SacI GAGCTC 3 cut(s) 351, 1914, 2186
SalI GTCGAC 1 cut(s) 1315
SatI GCNGC 1 cut(s) 1857
Sau96I GGNCC 7 cut(s) 1301, 1450, 2039, 2063, 2127, 2128, 2519
ScaI AGTACT 2 cut(s) 1132, 1779
SchI GAGTC 2 cut(s) 2457, 2674
SduI GDGCHC 8 cut(s) 351, 1406, 1708, 1914, 2131, 2186, 2455, 2817
SfaNI GCATC 5 cut(s) 299, 946, 1258, 1843, 2966
SfcI CTRYAG 2 cut(s) 2467, 2583
SfuI TTCGAA 3 cut(s) 769, 1941, 2320
SinI GGWCC 1 cut(s) 1450
SmaI CCCGGG 4 cut(s) 2043, 2062, 2273, 2290
SmiI ATTTAAAT 1 cut(s) 2785
SmiMI CAYNNNNRTG 6 cut(s) 713, 826, 1191, 1369, 1716, 3048
SmlI CTYRAG 3 cut(s) 1199, 2132, 3135
SmoI CTYRAG 3 cut(s) 1199, 2132, 3135
SnaBI TACGTA 1 cut(s) 1828
SseBI AGGCCT 2 cut(s) 1901, 2173
SsiI CCGC 6 cut(s) 372, 1214, 1571, 2008, 2238, 2293
SspI AATATT 2 cut(s) 2781, 2806
SspMI CTAG 5 cut(s) 21, 464, 1124, 1398, 2163
SstI GAGCTC 3 cut(s) 351, 1914, 2186
StuI AGGCCT 2 cut(s) 1901, 2173
StyI CCWWGG 4 cut(s) 168, 864, 1489, 2847
SwaI ATTTAAAT 1 cut(s) 2785
TatI WGTACW 6 cut(s) 159, 326, 777, 1130, 1195, 1777
TfiI GAWTC 5 cut(s) 114, 368, 1183, 1394, 2322
TseFI GTSAC 6 cut(s) 214, 598, 1493, 1879, 2213, 2300
TseI GCWGC 1 cut(s) 1856
Tsp45I GTSAC 6 cut(s) 214, 598, 1493, 1879, 2213, 2300
TspGWI ACGGA 2 cut(s) 1167, 2941
TspMI CCCGGG 4 cut(s) 2041, 2060, 2271, 2288
Tth111I GACNNNGTC 1 cut(s) 1360
Van91I CCANNNNNTGG 1 cut(s) 736
Vha464I CTTAAG 1 cut(s) 2132
VpaK11BI GGWCC 1 cut(s) 1450
XapI RAATTY 3 cut(s) 1295, 2653, 2881
XbaI TCTAGA 1 cut(s) 1123
XceI RCATGY 2 cut(s) 1682, 2581
XcmI CCANNNNNNNNNTGG 2 cut(s) 1063, 2322
XmaI CCCGGG 4 cut(s) 2041, 2060, 2271, 2288
XmiI GTMKAC 2 cut(s) 297, 1316
XspI CTAG 5 cut(s) 21, 464, 1124, 1398, 2163
ZrmI AGTACT 2 cut(s) 1132, 1779
Zsp2I ATGCAT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.