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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 680 |
| AccB1I | GGYRCC | 1 cut(s) | 546 |
| AccI | GTMKAC | 1 cut(s) | 730 |
| AciI | CCGC | 4 cut(s) | 475, 756, 1096, 1506 |
| AclWI | GGATC | 2 cut(s) | 887, 1582 |
| AcsI | RAATTY | 6 cut(s) | 592, 638, 860, 1253, 1560, 1649 |
| AfaI | GTAC | 8 cut(s) | 7, 43, 238, 448, 908, 989, 1231, 1323 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 479, 706, 834, 1456 |
| AflIII | ACRYGT | 1 cut(s) | 186 |
| AgsI | TTSAA | 4 cut(s) | 405, 532, 634, 932 |
| AjnI | CCWGG | 4 cut(s) | 699, 723, 1098, 1455 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 859, 891 |
| AleI | CACNNNNGTG | 1 cut(s) | 189 |
| AluBI | AGCT | 9 cut(s) | 24, 219, 348, 526, 943, 1136, 1212, 1340, 1478 |
| AluI | AGCT | 9 cut(s) | 24, 219, 348, 526, 943, 1136, 1212, 1340, 1478 |
| Alw21I | GWGCWC | 2 cut(s) | 945, 1480 |
| AlwI | GGATC | 2 cut(s) | 887, 1582 |
| Ama87I | CYCGRG | 2 cut(s) | 705, 1473 |
| AoxI | GGCC | 6 cut(s) | 702, 708, 763, 1091, 1458, 1625 |
| ApaI | GGGCCC | 3 cut(s) | 712, 767, 1095 |
| ApoI | RAATTY | 6 cut(s) | 592, 638, 860, 1253, 1560, 1649 |
| AseI | ATTAAT | 2 cut(s) | 281, 515 |
| AspA2I | CCTAGG | 3 cut(s) | 478, 845, 1087 |
| AspLEI | GCGC | 2 cut(s) | 485, 1382 |
| AsuC2I | CCSGG | 2 cut(s) | 706, 707 |
| AsuHPI | GGTGA | 3 cut(s) | 817, 1076, 1567 |
| AvaI | CYCGRG | 2 cut(s) | 705, 1473 |
| AvaII | GGWCC | 3 cut(s) | 114, 507, 1513 |
| AvrII | CCTAGG | 3 cut(s) | 478, 845, 1087 |
| BaeGI | GKGCMC | 3 cut(s) | 712, 767, 1095 |
| BanI | GGYRCC | 1 cut(s) | 546 |
| BanII | GRGCYC | 5 cut(s) | 712, 767, 945, 1095, 1480 |
| BauI | CACGAG | 3 cut(s) | 805, 1555, 1621 |
| Bbv12I | GWGCWC | 2 cut(s) | 945, 1480 |
| BccI | CCATC | 4 cut(s) | 837, 978, 1587, 1615 |
| BceAI | ACGGC | 2 cut(s) | 1006, 1619 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1277, 1311 |
| BciT130I | CCWGG | 4 cut(s) | 701, 725, 1100, 1457 |
| BcnI | CCSGG | 2 cut(s) | 706, 707 |
| BfaI | CTAG | 9 cut(s) | 111, 198, 479, 486, 846, 1088, 1304, 1428, 1617 |
| BfmI | CTRYAG | 1 cut(s) | 1644 |
| BfoI | RGCGCY | 1 cut(s) | 486 |
| BlnI | CCTAGG | 3 cut(s) | 478, 845, 1087 |
| BmcAI | AGTACT | 2 cut(s) | 448, 1323 |
| Bme1390I | CCNGG | 6 cut(s) | 701, 706, 707, 725, 1100, 1457 |
| Bme18I | GGWCC | 3 cut(s) | 114, 507, 1513 |
| BmeT110I | CYCGRG | 2 cut(s) | 705, 1473 |
| BmrFI | CCNGG | 6 cut(s) | 701, 706, 707, 725, 1100, 1457 |
| BmrI | ACTGGG | 1 cut(s) | 811 |
| BmsI | GCATC | 3 cut(s) | 886, 1112, 1184 |
| BmuI | ACTGGG | 1 cut(s) | 811 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1467, 1499 |
| Bpu10I | CCTNAGC | 2 cut(s) | 323, 522 |
| BpuMI | CCSGG | 2 cut(s) | 706, 707 |
| BsaBI | GATNNNNATC | 2 cut(s) | 143, 884 |
| BsaJI | CCNNGG | 8 cut(s) | 478, 705, 723, 724, 845, 912, 1087, 1455 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 479, 706, 834, 1456 |
| Bse118I | RCCGGY | 1 cut(s) | 274 |
| Bse1I | ACTGG | 2 cut(s) | 817, 908 |
| Bse3DI | GCAATG | 1 cut(s) | 266 |
| Bse8I | GATNNNNATC | 2 cut(s) | 143, 884 |
| BseBI | CCWGG | 4 cut(s) | 701, 725, 1100, 1457 |
| BseDI | CCNNGG | 8 cut(s) | 478, 705, 723, 724, 845, 912, 1087, 1455 |
| BseGI | GGATG | 5 cut(s) | 696, 719, 1446, 1469, 1607 |
| BseJI | GATNNNNATC | 2 cut(s) | 143, 884 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 479, 706, 834, 1456 |
| BseMI | GCAATG | 1 cut(s) | 266 |
| BseMII | CTCAG | 2 cut(s) | 551, 1367 |
| BseNI | ACTGG | 2 cut(s) | 817, 908 |
| BseSI | GKGCMC | 3 cut(s) | 712, 767, 1095 |
| BshFI | GGCC | 6 cut(s) | 704, 710, 765, 1093, 1460, 1627 |
| BshNI | GGYRCC | 1 cut(s) | 546 |
| BsiHKAI | GWGCWC | 2 cut(s) | 945, 1480 |
| BsiHKCI | CYCGRG | 2 cut(s) | 705, 1473 |
| BsiSI | CCGG | 2 cut(s) | 275, 706 |
| BslFI | GGGAC | 1 cut(s) | 493 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 479, 706, 834, 1456 |
| BsmFI | GGGAC | 1 cut(s) | 493 |
| BsmI | GAATGC | 2 cut(s) | 302, 852 |
| BsnI | GGCC | 6 cut(s) | 704, 710, 765, 1093, 1460, 1627 |
| BsoBI | CYCGRG | 2 cut(s) | 705, 1473 |
| Bsp120I | GGGCCC | 3 cut(s) | 708, 763, 1091 |
| Bsp1286I | GDGCHC | 5 cut(s) | 712, 767, 945, 1095, 1480 |
| Bsp1407I | TGTACA | 1 cut(s) | 41 |
| Bsp19I | CCATGG | 1 cut(s) | 912 |
| BspACI | CCGC | 4 cut(s) | 475, 756, 1096, 1506 |
| BspANI | GGCC | 6 cut(s) | 704, 710, 765, 1093, 1460, 1627 |
| BspCNI | CTCAG | 2 cut(s) | 552, 1368 |
| BspPI | GGATC | 2 cut(s) | 887, 1582 |
| BspT107I | GGYRCC | 1 cut(s) | 546 |
| BsrDI | GCAATG | 1 cut(s) | 266 |
| BsrFI | RCCGGY | 1 cut(s) | 274 |
| BsrGI | TGTACA | 1 cut(s) | 41 |
| BsrI | ACTGG | 2 cut(s) | 817, 908 |
| BssAI | RCCGGY | 1 cut(s) | 274 |
| BssECI | CCNNGG | 8 cut(s) | 478, 705, 723, 724, 845, 912, 1087, 1455 |
| BssSI | CACGAG | 3 cut(s) | 805, 1555, 1621 |
| BssT1I | CCWWGG | 4 cut(s) | 478, 845, 912, 1087 |
| Bst2BI | CACGAG | 3 cut(s) | 805, 1555, 1621 |
| Bst2UI | CCWGG | 4 cut(s) | 701, 725, 1100, 1457 |
| BstAUI | TGTACA | 1 cut(s) | 41 |
| BstC8I | GCNNGC | 1 cut(s) | 995 |
| BstDEI | CTNAG | 5 cut(s) | 323, 522, 560, 574, 1376 |
| BstDSI | CCRYGG | 1 cut(s) | 912 |
| BstEII | GGTNACC | 2 cut(s) | 823, 1573 |
| BstF5I | GGATG | 5 cut(s) | 696, 719, 1446, 1469, 1607 |
| BstH2I | RGCGCY | 1 cut(s) | 486 |
| BstHHI | GCGC | 2 cut(s) | 485, 1382 |
| BstNI | CCWGG | 4 cut(s) | 701, 725, 1100, 1457 |
| BstNSI | RCATGY | 2 cut(s) | 190, 1175 |
| BstPI | GGTNACC | 2 cut(s) | 823, 1573 |
| BstSCI | CCNGG | 6 cut(s) | 699, 704, 705, 723, 1098, 1455 |
| BstSFI | CTRYAG | 1 cut(s) | 1644 |
| BstSLI | GKGCMC | 3 cut(s) | 712, 767, 1095 |
| BstX2I | RGATCY | 1 cut(s) | 879 |
| BstYI | RGATCY | 1 cut(s) | 879 |
| BsuRI | GGCC | 6 cut(s) | 704, 710, 765, 1093, 1460, 1627 |
| BtgI | CCRYGG | 1 cut(s) | 912 |
| BtsCI | GGATG | 5 cut(s) | 696, 719, 1446, 1469, 1607 |
| BtsIMutI | CAGTG | 1 cut(s) | 824 |
| Cac8I | GCNNGC | 1 cut(s) | 995 |
| CfoI | GCGC | 2 cut(s) | 485, 1382 |
| Cfr10I | RCCGGY | 1 cut(s) | 274 |
| Cfr9I | CCCGGG | 1 cut(s) | 705 |
| Csp6I | GTAC | 8 cut(s) | 6, 42, 237, 447, 907, 988, 1230, 1322 |
| CviAII | CATG | 4 cut(s) | 187, 653, 913, 1172 |
| CviQI | GTAC | 8 cut(s) | 6, 42, 237, 447, 907, 988, 1230, 1322 |
| DdeI | CTNAG | 5 cut(s) | 323, 522, 560, 574, 1376 |
| Ecl136II | GAGCTC | 2 cut(s) | 943, 1478 |
| Eco130I | CCWWGG | 4 cut(s) | 478, 845, 912, 1087 |
| Eco147I | AGGCCT | 1 cut(s) | 1627 |
| Eco24I | GRGCYC | 5 cut(s) | 712, 767, 945, 1095, 1480 |
| Eco47I | GGWCC | 3 cut(s) | 114, 507, 1513 |
| Eco53kI | GAGCTC | 2 cut(s) | 943, 1478 |
| Eco88I | CYCGRG | 2 cut(s) | 705, 1473 |
| Eco91I | GGTNACC | 2 cut(s) | 823, 1573 |
| EcoICRI | GAGCTC | 2 cut(s) | 943, 1478 |
| EcoO109I | RGGNCCY | 6 cut(s) | 507, 709, 764, 1091, 1092, 1459 |
| EcoO65I | GGTNACC | 2 cut(s) | 823, 1573 |
| EcoRII | CCWGG | 4 cut(s) | 699, 723, 1098, 1455 |
| EcoT14I | CCWWGG | 4 cut(s) | 478, 845, 912, 1087 |
| EcoT22I | ATGCAT | 1 cut(s) | 1177 |
| EcoT38I | GRGCYC | 5 cut(s) | 712, 767, 945, 1095, 1480 |
| ErhI | CCWWGG | 4 cut(s) | 478, 845, 912, 1087 |
| FaeI | CATG | 4 cut(s) | 190, 656, 916, 1175 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 859, 891 |
| FaqI | GGGAC | 1 cut(s) | 493 |
| FatI | CATG | 4 cut(s) | 186, 652, 912, 1171 |
| FauI | CCCGC | 2 cut(s) | 482, 1103 |
| FblI | GTMKAC | 1 cut(s) | 730 |
| FokI | GGATG | 5 cut(s) | 683, 706, 1433, 1456, 1594 |
| FriOI | GRGCYC | 5 cut(s) | 712, 767, 945, 1095, 1480 |
| FspBI | CTAG | 9 cut(s) | 111, 198, 479, 486, 846, 1088, 1304, 1428, 1617 |
| GlaI | GCGC | 2 cut(s) | 484, 1381 |
| HaeII | RGCGCY | 1 cut(s) | 486 |
| HaeIII | GGCC | 6 cut(s) | 704, 710, 765, 1093, 1460, 1627 |
| HapII | CCGG | 2 cut(s) | 275, 706 |
| HhaI | GCGC | 2 cut(s) | 485, 1382 |
| Hin1II | CATG | 4 cut(s) | 190, 656, 916, 1175 |
| Hin6I | GCGC | 2 cut(s) | 483, 1380 |
| HinP1I | GCGC | 2 cut(s) | 483, 1380 |
| HincII | GTYRAC | 1 cut(s) | 731 |
| HindII | GTYRAC | 1 cut(s) | 731 |
| HindIII | AAGCTT | 7 cut(s) | 22, 217, 346, 524, 1134, 1210, 1338 |
| HinfI | GANTC | 3 cut(s) | 732, 1389, 1482 |
| HpaII | CCGG | 2 cut(s) | 275, 706 |
| HphI | GGTGA | 3 cut(s) | 817, 1076, 1567 |
| Hpy166II | GTNNAC | 9 cut(s) | 6, 44, 239, 368, 492, 731, 909, 988, 1232 |
| Hpy188I | TCNGA | 3 cut(s) | 890, 1180, 1377 |
| Hpy188III | TCNNGA | 7 cut(s) | 11, 510, 794, 857, 883, 1450, 1473 |
| Hpy8I | GTNNAC | 9 cut(s) | 6, 44, 239, 368, 492, 731, 909, 988, 1232 |
| HpyF3I | CTNAG | 5 cut(s) | 323, 522, 560, 574, 1376 |
| Hsp92II | CATG | 4 cut(s) | 190, 656, 916, 1175 |
| HspAI | GCGC | 2 cut(s) | 483, 1380 |
| LmnI | GCTCC | 1 cut(s) | 1002 |
| LweI | GCATC | 3 cut(s) | 886, 1112, 1184 |
| MaeI | CTAG | 9 cut(s) | 111, 198, 479, 486, 846, 1088, 1304, 1428, 1617 |
| MaeIII | GTNAC | 5 cut(s) | 692, 823, 1442, 1573, 1636 |
| MboII | GAAGA | 1 cut(s) | 920 |
| MflI | RGATCY | 1 cut(s) | 879 |
| MhlI | GDGCHC | 5 cut(s) | 712, 767, 945, 1095, 1480 |
| MlyI | GAGTC | 2 cut(s) | 726, 1476 |
| MnlI | CCTC | 4 cut(s) | 660, 788, 1538, 1617 |
| Mph1103I | ATGCAT | 1 cut(s) | 1177 |
| MslI | CAYNNNNRTG | 1 cut(s) | 189 |
| MspI | CCGG | 2 cut(s) | 275, 706 |
| MspR9I | CCNGG | 6 cut(s) | 701, 706, 707, 725, 1100, 1457 |
| Mva1269I | GAATGC | 2 cut(s) | 302, 852 |
| MvaI | CCWGG | 4 cut(s) | 701, 725, 1100, 1457 |
| NciI | CCSGG | 2 cut(s) | 706, 707 |
| NcoI | CCATGG | 1 cut(s) | 912 |
| NlaIII | CATG | 4 cut(s) | 190, 656, 916, 1175 |
| NmuCI | GTSAC | 4 cut(s) | 692, 823, 1442, 1573 |
| NsiI | ATGCAT | 1 cut(s) | 1177 |
| NspI | RCATGY | 2 cut(s) | 190, 1175 |
| OliI | CACNNNNGTG | 1 cut(s) | 189 |
| PasI | CCCWGGG | 1 cut(s) | 724 |
| PceI | AGGCCT | 1 cut(s) | 1627 |
| PciI | ACATGT | 1 cut(s) | 186 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 736, 1486 |
| PctI | GAATGC | 2 cut(s) | 302, 852 |
| PfeI | GAWTC | 1 cut(s) | 1389 |
| PleI | GAGTC | 2 cut(s) | 726, 1476 |
| PpsI | GAGTC | 2 cut(s) | 726, 1476 |
| PpuMI | RGGWCCY | 1 cut(s) | 507 |
| PscI | ACATGT | 1 cut(s) | 186 |
| PshBI | ATTAAT | 2 cut(s) | 281, 515 |
| PsiI | TTATAA | 1 cut(s) | 680 |
| Psp124BI | GAGCTC | 2 cut(s) | 945, 1480 |
| Psp5II | RGGWCCY | 1 cut(s) | 507 |
| Psp6I | CCWGG | 4 cut(s) | 699, 723, 1098, 1455 |
| PspEI | GGTNACC | 2 cut(s) | 823, 1573 |
| PspGI | CCWGG | 4 cut(s) | 699, 723, 1098, 1455 |
| PspOMI | GGGCCC | 3 cut(s) | 708, 763, 1091 |
| PspPPI | RGGWCCY | 1 cut(s) | 507 |
| PsuI | RGATCY | 1 cut(s) | 879 |
| RsaI | GTAC | 8 cut(s) | 7, 43, 238, 448, 908, 989, 1231, 1323 |
| RsaNI | GTAC | 8 cut(s) | 6, 42, 237, 447, 907, 988, 1230, 1322 |
| RseI | CAYNNNNRTG | 1 cut(s) | 189 |
| SacI | GAGCTC | 2 cut(s) | 945, 1480 |
| SalI | GTCGAC | 1 cut(s) | 729 |
| ScaI | AGTACT | 2 cut(s) | 448, 1323 |
| SchI | GAGTC | 2 cut(s) | 726, 1476 |
| ScrFI | CCNGG | 6 cut(s) | 701, 706, 707, 725, 1100, 1457 |
| SduI | GDGCHC | 5 cut(s) | 712, 767, 945, 1095, 1480 |
| SfaNI | GCATC | 3 cut(s) | 886, 1112, 1184 |
| SfcI | CTRYAG | 1 cut(s) | 1644 |
| SinI | GGWCC | 3 cut(s) | 114, 507, 1513 |
| SmaI | CCCGGG | 1 cut(s) | 707 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 189 |
| SmlI | CTYRAG | 1 cut(s) | 9 |
| SmoI | CTYRAG | 1 cut(s) | 9 |
| SrfI | GCCCGGGC | 1 cut(s) | 707 |
| SseBI | AGGCCT | 1 cut(s) | 1627 |
| SsiI | CCGC | 4 cut(s) | 475, 756, 1096, 1506 |
| SspI | AATATT | 1 cut(s) | 1035 |
| SspMI | CTAG | 9 cut(s) | 111, 198, 479, 486, 846, 1088, 1304, 1428, 1617 |
| SstI | GAGCTC | 2 cut(s) | 945, 1480 |
| StuI | AGGCCT | 1 cut(s) | 1627 |
| StyD4I | CCNGG | 6 cut(s) | 699, 704, 705, 723, 1098, 1455 |
| StyI | CCWWGG | 4 cut(s) | 478, 845, 912, 1087 |
| TaqI | TCGA | 6 cut(s) | 54, 566, 730, 884, 1206, 1480 |
| TatI | WGTACW | 6 cut(s) | 5, 41, 236, 446, 1229, 1321 |
| TfiI | GAWTC | 1 cut(s) | 1389 |
| TscAI | CASTG | 1 cut(s) | 824 |
| TseFI | GTSAC | 4 cut(s) | 692, 823, 1442, 1573 |
| Tsp45I | GTSAC | 4 cut(s) | 692, 823, 1442, 1573 |
| TspDTI | ATGAA | 4 cut(s) | 378, 649, 1071, 1266 |
| TspMI | CCCGGG | 1 cut(s) | 705 |
| TspRI | CASTG | 1 cut(s) | 824 |
| VpaK11BI | GGWCC | 3 cut(s) | 114, 507, 1513 |
| VspI | ATTAAT | 2 cut(s) | 281, 515 |
| XapI | RAATTY | 6 cut(s) | 592, 638, 860, 1253, 1560, 1649 |
| XceI | RCATGY | 2 cut(s) | 190, 1175 |
| XmaI | CCCGGG | 1 cut(s) | 705 |
| XmaJI | CCTAGG | 3 cut(s) | 478, 845, 1087 |
| XmiI | GTMKAC | 1 cut(s) | 730 |
| XspI | CTAG | 9 cut(s) | 111, 198, 479, 486, 846, 1088, 1304, 1428, 1617 |
| ZrmI | AGTACT | 2 cut(s) | 448, 1323 |
| Zsp2I | ATGCAT | 1 cut(s) | 1177 |