pycom01g04250

Retroviral aspartyl protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000158
Physical Location & Seq
Forward (+)
3183051 .. 3185675
2625 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g04250.1

Sequence Viewer

Length: 2016 bp
ATGTCAAGGACTGTGGGGCCAAGAGGGCCGAAAGGAAGGATCATGGTGTTGGTGGCCGAACACCATAAACTCAAGGCCGCCATGAGCAGTTCTCTATCCATGGTAATCTCCATGGTCGAGAGCATGATGGCGCTCATTCGGTCGACCCAGGCGGCCCAGGCCGCGGTAGTCGAGGGCCAAGCCCCTTGGGGCCGCGCCAAGCACCATTTCGACCAATCAAACCCCTGCAGCAGGGGTGTTAAGCATTGTTCCTTGAGAAGGTTACTGATGCACGACGGCACTGCGTCATTTTCGAAGAGTAGCGTTTTGATGGCGCTCCGGTCAATAAAGTCTTTGCACTTGTTGCACTCATCGGAAAGCTTGGAGATGAAGGAGGCCATTGGTAAAGAAGAGAGTAGTGCCAGGAATGGCAAAGGGAGGTTTTCAAAATGTCTGAAAGCGTGGGATGCGAATGGAAGAAATTTGGGTATTTATAGGCATTTCAGAAAGAAGATCAAGCGTTTGATATTCGAAAGCACTATTTTTCGAGGAACCAGGACGCACGATTGCCCTGCACAAAGCCTCTCAAATACCTTGAGATTTTTCCTTTTCTTTTTCTGCCGACACACCTTCAGTTTGGATAAACAGCACTGTGGAGGCACCCGGCGAACACCTGCAGTTTGGATAAATAGCACTAAGGGTTTTCGAACCCTTGTTGGTAGAGGTCACCTTGCTAGCCCCCTCGGCGTAGTAAGGTGTTATGAATTACGTTATTCGGCGTACTGGACGCCGAGTGATTTTATGATTGGATATTCACAAGTGACTTTCAGAGTTCGGCATTCTAATGGCCGAACTACATTTACCATCAAGACATACATCACGTTTGAGTACCTGTGTCCGTATAGTTTGGTTGACCGAATCGGGCGCCGACGATTTGTGAACTTTACAGAACTAGCAGCCTTGTTTTTAGGCTCTAGAACCCAAAGACCGAGAGTGTTCCTTCCTCGGTCGCAGTCGCAAGATAAAGAAGTCAACAACGCACTCAACGCGACATCAACGAATTTTACTCCTCGGCCGAGCTCGGCCGACGAGTTGGCACGCCCCGCATTCAACCGAAGGACGTTTTGTAATTTTTGGAGTCAACAGGGACATTATGAGTTTCTAGTCATGCCCTTTGGACTCACTAATACCCTTCCTCAGGCAGTTTATACTAGTATTTTTTATGACATCTTGGTTTATAAAAAAACTTGGGAGGATCACTTGTCTAATTTGTACAAGACCCTCAAGTTACTCCAGGAAAACCAATTATATGTGAAAAATAAAAAATGTATATTTGGTCAAAGTAAAGTACTTGATTCAAGCCATTTAGGATTGGTGAATTCTTGCCAATGTGAAAGAATTGAGAGGATTCATTGGGCTCACAGGATACTACAGGAAGTTTGTTCTTGGTTATGGGAAAAATATTTGATGAACCCAAACAATATGATTGGACGTAGAAAGTTTGACAAAGTTTGCAGTGTTTTGGCCGCAAAGAGGAGAGGACATGGGACGACAAAAATGTTTTTGTTTTGTTTTGACCTAAGGAAATCTAAACGAGTGATATCATATAGAATTATGACTTCTTGTATTGATGTGAATCATACACTGATTACAATGAGAAAATTACATTCCTATATGATACGCTACAATTACAAAAATGATTTCGGATTAATTAATTATATTCTAACAGGTGTCAATAATGTCAATGACGAACTCAGTTTTAGTCATCCAAAGGTGGAAGTTTTTGCTGGTTGCATAGGCCTAGAAAGGGTAAATTGCTTATTCAAAGGGCAATATAGTAATAAGGAAAATGAGGTATGTTCAGTTGAATTTCAAAACAATTTTTTTATTGAGGTAGGACTTTTGCCAAAACCAACAGGATCCTCTCCGGATCTTTTGGTGGAGATCTTGAGGATTCGTAAATTATATTTGTTTATCGTATATCTTGTAGTCATTAAAATGATTTCTAACCACACAATATACGATAAACGAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag

Protein Analysis

672

Amino Acids

77.43

Weight (kDa)

9.97

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1218
AarI CACCTGC 1 cut(s) 661
Acc36I ACCTGC 1 cut(s) 661
AccB1I GGYRCC 2 cut(s) 638, 903
AccI GTMKAC 1 cut(s) 143
AccII CGCG 3 cut(s) 164, 195, 1028
AccIII TCCGGA 1 cut(s) 1906
AciI CCGC 7 cut(s) 78, 152, 162, 164, 193, 1083, 1506
AclWI GGATC 5 cut(s) 47, 1242, 1893, 1906, 1917
AcoI YGGCCR 5 cut(s) 54, 826, 1052, 1062, 1503
AcsI RAATTY 4 cut(s) 460, 1039, 1357, 1847
AcuI CTGAAG 1 cut(s) 595
AcyI GRCGYC 2 cut(s) 767, 904
AfaI GTAC 4 cut(s) 761, 869, 1253, 1329
AfiI CCNNNNNNNGG 6 cut(s) 163, 231, 258, 1177, 1512, 1786
AgsI TTSAA 6 cut(s) 426, 1090, 1338, 1804, 1847, 1853
AhlI ACTAGT 1 cut(s) 1190
AjnI CCWGG 5 cut(s) 147, 156, 401, 533, 1272
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AluBI AGCT 2 cut(s) 360, 1059
AluI AGCT 2 cut(s) 360, 1059
Alw21I GWGCWC 1 cut(s) 1061
AlwI GGATC 5 cut(s) 47, 1242, 1893, 1906, 1917
Aor13HI TCCGGA 1 cut(s) 1906
ApeKI GCWGC 2 cut(s) 228, 935
ApoI RAATTY 4 cut(s) 460, 1039, 1357, 1847
AseI ATTAAT 2 cut(s) 1688, 1692
AspLEI GCGC 4 cut(s) 133, 197, 316, 906
AspS9I GGNCC 5 cut(s) 17, 26, 154, 175, 190
AsuC2I CCSGG 1 cut(s) 643
AsuHPI GGTGA 2 cut(s) 698, 1366
AsuII TTCGAA 3 cut(s) 293, 510, 685
AsuNHI GCTAGC 1 cut(s) 713
AxyI CCTNAGG 2 cut(s) 1176, 1559
BamHI GGATCC 1 cut(s) 1898
BanI GGYRCC 2 cut(s) 638, 903
BanII GRGCYC 2 cut(s) 1061, 1399
Bbv12I GWGCWC 1 cut(s) 1061
BbvI GCAGC 2 cut(s) 240, 947
BccI CCATC 3 cut(s) 121, 304, 851
BceAI ACGGC 1 cut(s) 292
BcgI CGANNNNNNTGC 4 cut(s) 263, 297, 533, 567
BciT130I CCWGG 5 cut(s) 149, 158, 403, 535, 1274
BciVI GTATCC 1 cut(s) 1398
BcnI CCSGG 1 cut(s) 643
BcuI ACTAGT 1 cut(s) 1190
BfaI CTAG 6 cut(s) 714, 932, 954, 1142, 1191, 1781
BfmI CTRYAG 3 cut(s) 226, 654, 1409
BfoI RGCGCY 3 cut(s) 134, 317, 907
BfuAI ACCTGC 1 cut(s) 661
BfuI GTATCC 1 cut(s) 1398
BglI GCCNNNNNGGC 2 cut(s) 25, 723
BglII AGATCT 1 cut(s) 1923
BisI GCNGC 7 cut(s) 78, 153, 162, 193, 229, 936, 1506
BlsI GCNGC 7 cut(s) 79, 154, 163, 194, 230, 937, 1507
BmcAI AGTACT 1 cut(s) 1329
Bme1390I CCNGG 6 cut(s) 149, 158, 403, 535, 643, 1274
BmgT120I GGNCC 5 cut(s) 17, 26, 154, 175, 190
BmiI GGNNCC 6 cut(s) 18, 191, 532, 640, 905, 1900
BmrFI CCNGG 6 cut(s) 149, 158, 403, 535, 643, 1274
BmsI GCATC 2 cut(s) 258, 436
BmtI GCTAGC 1 cut(s) 717
BplI GAGNNNNNCTC 2 cut(s) 76, 108
BpmI CTGGAG 1 cut(s) 1256
Bpu14I TTCGAA 3 cut(s) 293, 510, 685
BpuEI CTTGAG 5 cut(s) 56, 274, 595, 1247, 1948
BpuMI CCSGG 1 cut(s) 643
BsaBI GATNNNNATC 1 cut(s) 1614
BsaHI GRCGYC 2 cut(s) 767, 904
BsaJI CCNNGG 9 cut(s) 99, 111, 147, 156, 162, 185, 721, 983, 1049
BsaWI WCCGGW 2 cut(s) 318, 1906
Bsc4I CCNNNNNNNGG 6 cut(s) 163, 231, 258, 1177, 1512, 1786
Bse1I ACTGG 1 cut(s) 767
Bse21I CCTNAGG 2 cut(s) 1176, 1559
Bse8I GATNNNNATC 1 cut(s) 1614
BseAI TCCGGA 1 cut(s) 1906
BseBI CCWGG 5 cut(s) 149, 158, 403, 535, 1274
BseDI CCNNGG 9 cut(s) 99, 111, 147, 156, 162, 185, 721, 983, 1049
BseGI GGATG 2 cut(s) 451, 1744
BseJI GATNNNNATC 1 cut(s) 1614
BseLI CCNNNNNNNGG 6 cut(s) 163, 231, 258, 1177, 1512, 1786
BseMII CTCAG 2 cut(s) 1190, 1747
BseNI ACTGG 1 cut(s) 767
BseRI GAGGAG 2 cut(s) 1038, 1528
BseX3I CGGCCG 2 cut(s) 1052, 1062
BseXI GCAGC 2 cut(s) 240, 947
BsgI GTGCAG 1 cut(s) 537
Bsh1236I CGCG 3 cut(s) 164, 195, 1028
Bsh1285I CGRYCG 4 cut(s) 143, 989, 1055, 1065
BshNI GGYRCC 2 cut(s) 638, 903
BsiEI CGRYCG 4 cut(s) 143, 989, 1055, 1065
BsiHKAI GWGCWC 1 cut(s) 1061
BsiSI CCGG 3 cut(s) 319, 643, 1907
BslFI GGGAC 2 cut(s) 1140, 1540
BslI CCNNNNNNNGG 6 cut(s) 163, 231, 258, 1177, 1512, 1786
BsmFI GGGAC 2 cut(s) 1140, 1540
BsmI GAATGC 2 cut(s) 817, 1085
Bsp119I TTCGAA 3 cut(s) 293, 510, 685
Bsp1286I GDGCHC 2 cut(s) 1061, 1399
Bsp13I TCCGGA 1 cut(s) 1906
Bsp1407I TGTACA 1 cut(s) 1251
Bsp143I GATC 6 cut(s) 39, 492, 1234, 1898, 1909, 1923
Bsp19I CCATGG 2 cut(s) 99, 111
BspACI CCGC 7 cut(s) 78, 152, 162, 164, 193, 1083, 1506
BspCNI CTCAG 2 cut(s) 1189, 1746
BspEI TCCGGA 1 cut(s) 1906
BspFNI CGCG 3 cut(s) 164, 195, 1028
BspLI GGNNCC 6 cut(s) 18, 191, 532, 640, 905, 1900
BspMAI CTGCAG 2 cut(s) 230, 658
BspMI ACCTGC 1 cut(s) 661
BspOI GCTAGC 1 cut(s) 717
BspPI GGATC 5 cut(s) 47, 1242, 1893, 1906, 1917
BspT104I TTCGAA 3 cut(s) 293, 510, 685
BspT107I GGYRCC 2 cut(s) 638, 903
BsrGI TGTACA 1 cut(s) 1251
BsrI ACTGG 1 cut(s) 767
BssECI CCNNGG 9 cut(s) 99, 111, 147, 156, 162, 185, 721, 983, 1049
BssMI GATC 6 cut(s) 39, 492, 1234, 1898, 1909, 1923
BssNI GRCGYC 2 cut(s) 767, 904
BssT1I CCWWGG 3 cut(s) 99, 111, 185
Bst2UI CCWGG 5 cut(s) 149, 158, 403, 535, 1274
Bst4CI ACNGT 2 cut(s) 13, 632
Bst6I CTCTTC 2 cut(s) 290, 384
BstACI GRCGYC 2 cut(s) 767, 904
BstAPI GCANNNNNTGC 1 cut(s) 343
BstAUI TGTACA 1 cut(s) 1251
BstBI TTCGAA 3 cut(s) 293, 510, 685
BstC8I GCNNGC 2 cut(s) 715, 1078
BstDEI CTNAG 4 cut(s) 675, 1176, 1559, 1733
BstDSI CCRYGG 3 cut(s) 99, 111, 162
BstEII GGTNACC 1 cut(s) 704
BstENI CCTNNNNNAGG 3 cut(s) 229, 256, 1175
BstF5I GGATG 2 cut(s) 451, 1744
BstFNI CGCG 3 cut(s) 164, 195, 1028
BstH2I RGCGCY 3 cut(s) 134, 317, 907
BstHHI GCGC 4 cut(s) 133, 197, 316, 906
BstKTI GATC 6 cut(s) 42, 495, 1237, 1901, 1912, 1926
BstMBI GATC 6 cut(s) 39, 492, 1234, 1898, 1909, 1923
BstMCI CGRYCG 4 cut(s) 143, 989, 1055, 1065
BstMWI GCNNNNNNNGC 8 cut(s) 25, 158, 161, 343, 446, 723, 1025, 1082
BstNI CCWGG 5 cut(s) 149, 158, 403, 535, 1274
BstPI GGTNACC 1 cut(s) 704
BstSCI CCNGG 6 cut(s) 147, 156, 401, 533, 641, 1272
BstSFI CTRYAG 3 cut(s) 226, 654, 1409
BstUI CGCG 3 cut(s) 164, 195, 1028
BstV1I GCAGC 2 cut(s) 240, 947
BstX2I RGATCY 3 cut(s) 1898, 1909, 1923
BstYI RGATCY 3 cut(s) 1898, 1909, 1923
BstZI CGGCCG 2 cut(s) 1052, 1062
Bsu36I CCTNAGG 2 cut(s) 1176, 1559
BsuI GTATCC 1 cut(s) 1398
BtgI CCRYGG 3 cut(s) 99, 111, 162
BtsCI GGATG 2 cut(s) 451, 1744
BtsI GCAGTG 2 cut(s) 279, 1501
BtsIMutI CAGTG 4 cut(s) 279, 628, 1501, 1622
BveI ACCTGC 1 cut(s) 661
Cac8I GCNNGC 2 cut(s) 715, 1078
CfoI GCGC 4 cut(s) 133, 197, 316, 906
Cfr13I GGNCC 5 cut(s) 17, 26, 154, 175, 190
Cfr42I CCGCGG 1 cut(s) 165
CseI GACGC 3 cut(s) 273, 547, 775
Csp6I GTAC 4 cut(s) 760, 868, 1252, 1328
CspCI CAANNNNNGTGG 1 cut(s) 29
CviAII CATG 8 cut(s) 43, 82, 100, 112, 124, 1147, 1523, 2013
CviQI GTAC 4 cut(s) 760, 868, 1252, 1328
DdeI CTNAG 4 cut(s) 675, 1176, 1559, 1733
DinI GGCGCC 1 cut(s) 905
DpnI GATC 6 cut(s) 41, 494, 1236, 1900, 1911, 1925
DpnII GATC 6 cut(s) 39, 492, 1234, 1898, 1909, 1923
EaeI YGGCCR 5 cut(s) 54, 826, 1052, 1062, 1503
EagI CGGCCG 2 cut(s) 1052, 1062
Eam1104I CTCTTC 2 cut(s) 290, 384
EarI CTCTTC 2 cut(s) 290, 384
Ecl136II GAGCTC 1 cut(s) 1059
EclXI CGGCCG 2 cut(s) 1052, 1062
Eco130I CCWWGG 3 cut(s) 99, 111, 185
Eco147I AGGCCT 1 cut(s) 1779
Eco24I GRGCYC 2 cut(s) 1061, 1399
Eco32I GATATC 1 cut(s) 1581
Eco52I CGGCCG 2 cut(s) 1052, 1062
Eco53kI GAGCTC 1 cut(s) 1059
Eco57I CTGAAG 1 cut(s) 595
Eco81I CCTNAGG 2 cut(s) 1176, 1559
Eco91I GGTNACC 1 cut(s) 704
EcoICRI GAGCTC 1 cut(s) 1059
EcoNI CCTNNNNNAGG 3 cut(s) 229, 256, 1175
EcoO65I GGTNACC 1 cut(s) 704
EcoRI GAATTC 1 cut(s) 1357
EcoRII CCWGG 5 cut(s) 147, 156, 401, 533, 1272
EcoRV GATATC 1 cut(s) 1581
EcoT14I CCWWGG 3 cut(s) 99, 111, 185
EcoT38I GRGCYC 2 cut(s) 1061, 1399
EgeI GGCGCC 1 cut(s) 905
EheI GGCGCC 1 cut(s) 905
ErhI CCWWGG 3 cut(s) 99, 111, 185
FaeI CATG 8 cut(s) 46, 85, 103, 115, 127, 1150, 1526, 2016
FaqI GGGAC 2 cut(s) 1140, 1540
FatI CATG 8 cut(s) 42, 81, 99, 111, 123, 1146, 1522, 2012
FauI CCCGC 1 cut(s) 1090
FblI GTMKAC 1 cut(s) 143
Fnu4HI GCNGC 7 cut(s) 78, 153, 162, 193, 229, 936, 1506
FokI GGATG 2 cut(s) 458, 1731
FriOI GRGCYC 2 cut(s) 1061, 1399
Fsp4HI GCNGC 7 cut(s) 78, 153, 162, 193, 229, 936, 1506
FspBI CTAG 6 cut(s) 714, 932, 954, 1142, 1191, 1781
GlaI GCGC 4 cut(s) 132, 196, 315, 905
GluI GCNGC 7 cut(s) 78, 153, 162, 193, 229, 936, 1506
GsuI CTGGAG 1 cut(s) 1256
HaeII RGCGCY 3 cut(s) 134, 317, 907
HapII CCGG 3 cut(s) 319, 643, 1907
HgaI GACGC 3 cut(s) 273, 547, 775
HhaI GCGC 4 cut(s) 133, 197, 316, 906
Hin1I GRCGYC 2 cut(s) 767, 904
Hin1II CATG 8 cut(s) 46, 85, 103, 115, 127, 1150, 1526, 2016
Hin6I GCGC 4 cut(s) 131, 195, 314, 904
HinP1I GCGC 4 cut(s) 131, 195, 314, 904
HincII GTYRAC 4 cut(s) 144, 892, 1012, 1121
HindII GTYRAC 4 cut(s) 144, 892, 1012, 1121
HindIII AAGCTT 1 cut(s) 358
HinfI GANTC 7 cut(s) 897, 1117, 1158, 1334, 1387, 1615, 1933
HpaII CCGG 3 cut(s) 319, 643, 1907
HphI GGTGA 2 cut(s) 698, 1366
Hpy166II GTNNAC 5 cut(s) 144, 892, 919, 1012, 1121
Hpy188I TCNGA 5 cut(s) 355, 435, 485, 809, 1685
Hpy188III TCNNGA 5 cut(s) 118, 847, 954, 1907, 1927
Hpy8I GTNNAC 5 cut(s) 144, 892, 919, 1012, 1121
Hpy99I CGWCG 3 cut(s) 278, 912, 1070
HpyAV CCTTC 7 cut(s) 30, 252, 364, 619, 989, 1089, 1181
HpyCH4III ACNGT 2 cut(s) 13, 632
HpyCH4IV ACGT 4 cut(s) 748, 860, 1100, 1471
HpyCH4V TGCA 8 cut(s) 228, 271, 337, 346, 554, 656, 1494, 1773
HpyF10VI GCNNNNNNNGC 8 cut(s) 25, 158, 161, 343, 446, 723, 1025, 1082
HpyF3I CTNAG 4 cut(s) 675, 1176, 1559, 1733
HpySE526I ACGT 4 cut(s) 748, 860, 1100, 1471
Hsp92I GRCGYC 2 cut(s) 767, 904
Hsp92II CATG 8 cut(s) 46, 85, 103, 115, 127, 1150, 1526, 2016
HspAI GCGC 4 cut(s) 131, 195, 314, 904
KasI GGCGCC 1 cut(s) 903
Kpn2I TCCGGA 1 cut(s) 1906
KspI CCGCGG 1 cut(s) 165
Kzo9I GATC 6 cut(s) 39, 492, 1234, 1898, 1909, 1923
LmnI GCTCC 1 cut(s) 321
Lsp1109I GCAGC 2 cut(s) 240, 947
LweI GCATC 2 cut(s) 258, 436
MaeI CTAG 6 cut(s) 714, 932, 954, 1142, 1191, 1781
MaeII ACGT 4 cut(s) 748, 860, 1100, 1471
MaeIII GTNAC 4 cut(s) 261, 704, 799, 1266
MalI GATC 6 cut(s) 41, 494, 1236, 1900, 1911, 1925
MboI GATC 6 cut(s) 39, 492, 1234, 1898, 1909, 1923
MboII GAAGA 4 cut(s) 307, 401, 468, 502
MflI RGATCY 3 cut(s) 1898, 1909, 1923
MhlI GDGCHC 2 cut(s) 1061, 1399
Mly113I GGCGCC 1 cut(s) 904
MlyI GAGTC 2 cut(s) 1126, 1152
MroI TCCGGA 1 cut(s) 1906
MseI TTAA 4 cut(s) 240, 1688, 1692, 1974
MslI CAYNNNNRTG 2 cut(s) 822, 1976
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 3 cut(s) 319, 643, 1907
MspR9I CCNGG 6 cut(s) 149, 158, 403, 535, 643, 1274
Mva1269I GAATGC 2 cut(s) 817, 1085
MvaI CCWGG 5 cut(s) 149, 158, 403, 535, 1274
MvnI CGCG 3 cut(s) 164, 195, 1028
MwoI GCNNNNNNNGC 8 cut(s) 25, 158, 161, 343, 446, 723, 1025, 1082
NarI GGCGCC 1 cut(s) 904
NciI CCSGG 1 cut(s) 643
NcoI CCATGG 2 cut(s) 99, 111
NdeII GATC 6 cut(s) 39, 492, 1234, 1898, 1909, 1923
NheI GCTAGC 1 cut(s) 713
NlaIII CATG 8 cut(s) 46, 85, 103, 115, 127, 1150, 1526, 2016
NlaIV GGNNCC 6 cut(s) 18, 191, 532, 640, 905, 1900
NmeAIII GCCGAG 5 cut(s) 702, 795, 1030, 1040, 1080
NmuCI GTSAC 2 cut(s) 704, 799
NspV TTCGAA 3 cut(s) 293, 510, 685
PacI TTAATTAA 1 cut(s) 1692
PaqCI CACCTGC 1 cut(s) 661
PceI AGGCCT 1 cut(s) 1779
PctI GAATGC 2 cut(s) 817, 1085
PfeI GAWTC 5 cut(s) 897, 1334, 1387, 1615, 1933
PfoI TCCNGGA 1 cut(s) 1272
PkrI GCNGC 7 cut(s) 79, 154, 163, 194, 230, 937, 1507
PleI GAGTC 2 cut(s) 1125, 1152
PluTI GGCGCC 1 cut(s) 907
PpsI GAGTC 2 cut(s) 1125, 1152
PshBI ATTAAT 2 cut(s) 1688, 1692
PsiI TTATAA 1 cut(s) 1218
Psp124BI GAGCTC 1 cut(s) 1061
Psp6I CCWGG 5 cut(s) 147, 156, 401, 533, 1272
PspEI GGTNACC 1 cut(s) 704
PspGI CCWGG 5 cut(s) 147, 156, 401, 533, 1272
PspN4I GGNNCC 6 cut(s) 18, 191, 532, 640, 905, 1900
PspPI GGNCC 5 cut(s) 17, 26, 154, 175, 190
PsrI GAACNNNNNNTAC 2 cut(s) 823, 855
PstI CTGCAG 2 cut(s) 230, 658
PsuI RGATCY 3 cut(s) 1898, 1909, 1923
RsaI GTAC 4 cut(s) 761, 869, 1253, 1329
RsaNI GTAC 4 cut(s) 760, 868, 1252, 1328
RseI CAYNNNNRTG 2 cut(s) 822, 1976
SacI GAGCTC 1 cut(s) 1061
SacII CCGCGG 1 cut(s) 165
SalI GTCGAC 1 cut(s) 142
SaqAI TTAA 4 cut(s) 240, 1688, 1692, 1974
SatI GCNGC 7 cut(s) 78, 153, 162, 193, 229, 936, 1506
Sau3AI GATC 6 cut(s) 39, 492, 1234, 1898, 1909, 1923
Sau96I GGNCC 5 cut(s) 17, 26, 154, 175, 190
ScaI AGTACT 1 cut(s) 1329
SchI GAGTC 2 cut(s) 1126, 1152
ScrFI CCNGG 6 cut(s) 149, 158, 403, 535, 643, 1274
SduI GDGCHC 2 cut(s) 1061, 1399
SfaNI GCATC 2 cut(s) 258, 436
SfcI CTRYAG 3 cut(s) 226, 654, 1409
SfiI GGCCNNNNNGGCC 1 cut(s) 25
SfoI GGCGCC 1 cut(s) 905
Sfr303I CCGCGG 1 cut(s) 165
SfuI TTCGAA 3 cut(s) 293, 510, 685
SgrBI CCGCGG 1 cut(s) 165
SmiMI CAYNNNNRTG 2 cut(s) 822, 1976
SmlI CTYRAG 5 cut(s) 71, 253, 574, 1262, 1927
SmoI CTYRAG 5 cut(s) 71, 253, 574, 1262, 1927
SpeI ACTAGT 1 cut(s) 1190
SseBI AGGCCT 1 cut(s) 1779
SsiI CCGC 7 cut(s) 78, 152, 162, 164, 193, 1083, 1506
SspDI GGCGCC 1 cut(s) 903
SspI AATATT 1 cut(s) 1442
SspMI CTAG 6 cut(s) 714, 932, 954, 1142, 1191, 1781
SstI GAGCTC 1 cut(s) 1061
StuI AGGCCT 1 cut(s) 1779
StyD4I CCNGG 6 cut(s) 147, 156, 401, 533, 641, 1272
StyI CCWWGG 3 cut(s) 99, 111, 185
TaaI ACNGT 2 cut(s) 13, 632
TaiI ACGT 4 cut(s) 751, 863, 1103, 1474
TaqI TCGA 8 cut(s) 117, 143, 171, 210, 293, 510, 526, 685
TaqII GACCGA 4 cut(s) 129, 909, 975, 982
TatI WGTACW 2 cut(s) 1251, 1327
TauI GCSGC 5 cut(s) 80, 155, 164, 195, 1508
TfiI GAWTC 5 cut(s) 897, 1334, 1387, 1615, 1933
Tru1I TTAA 4 cut(s) 240, 1688, 1692, 1974
Tru9I TTAA 4 cut(s) 240, 1688, 1692, 1974
TscAI CASTG 4 cut(s) 286, 635, 1501, 1629
TseFI GTSAC 2 cut(s) 704, 799
TseI GCWGC 2 cut(s) 228, 935
Tsp45I GTSAC 2 cut(s) 704, 799
TspDTI ATGAA 4 cut(s) 383, 756, 1379, 1463
TspGWI ACGGA 1 cut(s) 867
TspRI CASTG 4 cut(s) 286, 635, 1501, 1629
VspI ATTAAT 2 cut(s) 1688, 1692
XagI CCTNNNNNAGG 3 cut(s) 229, 256, 1175
XapI RAATTY 4 cut(s) 460, 1039, 1357, 1847
XbaI TCTAGA 1 cut(s) 953
XmiI GTMKAC 1 cut(s) 143
XspI CTAG 6 cut(s) 714, 932, 954, 1142, 1191, 1781
ZrmI AGTACT 1 cut(s) 1329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.