pycom14g05380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0000158
Physical Location & Seq
Reverse (-)
5151569 .. 5151970
402 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g05380.1

Sequence Viewer

Length: 402 bp
ATGCCTTCCCTTTTCCTCCTCTCCATCTTTCTTTTTTTTTTTTTCTTTTGTCCCTATTTCTTCTTCTTTTCTTTTCCCCAGACCTCAACCGCATCATCTTCTCTCCCTCTTCTTTCTTTTTTTTCCCTATACCCCATATCTTGTTTCTTCTCACCCCAATTTCGAATCTCACCCACCGACTCTATCCTCCCCAAAATTCCAGAGCTCTATTTCTACACTTTCTACTTGATCTCCAGCAGATTAACTCCGTTTGTAGCTCCCGACACCGCCACCATAGCCGAGTCCAGCAAGCCCACCATAGCCGATTCTACCAAGCGGTGCCTCGTAAATATATTCAAAGATTTATATGTGGAATTTGAATTTAGATTTCTCAAATTTTCATATGATTTTAGGTCTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.58

Weight (kDa)

7.66

Isoelectric Point (pI)

62.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 318
AciI CCGC 3 cut(s) 90, 267, 316
AcsI RAATTY 4 cut(s) 195, 353, 359, 374
AgsI TTSAA 2 cut(s) 337, 359
AluBI AGCT 2 cut(s) 205, 257
AluI AGCT 2 cut(s) 205, 257
Alw21I GWGCWC 1 cut(s) 207
ApoI RAATTY 4 cut(s) 195, 353, 359, 374
AsuHPI GGTGA 2 cut(s) 144, 162
AsuII TTCGAA 1 cut(s) 163
BanI GGYRCC 1 cut(s) 318
BanII GRGCYC 1 cut(s) 207
BbsI GAAGAC 1 cut(s) 387
Bbv12I GWGCWC 1 cut(s) 207
BccI CCATC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 320
BmsI GCATC 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 387
BpmI CTGGAG 1 cut(s) 217
Bpu14I TTCGAA 1 cut(s) 163
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
BseRI GAGGAG 1 cut(s) 8
BshNI GGYRCC 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 207
BslFI GGGAC 1 cut(s) 36
BsmFI GGGAC 1 cut(s) 36
Bsp119I TTCGAA 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 228
BspACI CCGC 3 cut(s) 90, 267, 316
BspLI GGNNCC 1 cut(s) 320
BspT104I TTCGAA 1 cut(s) 163
BspT107I GGYRCC 1 cut(s) 318
BssMI GATC 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 114
BstBI TTCGAA 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 290
BstKTI GATC 1 cut(s) 231
BstMBI GATC 1 cut(s) 228
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstV2I GAAGAC 1 cut(s) 387
Cac8I GCNNGC 1 cut(s) 290
CviJI RGCY 5 cut(s) 205, 257, 278, 292, 302
CviKI_1 RGCY 5 cut(s) 205, 257, 278, 292, 302
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Ecl136II GAGCTC 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 207
FaiI YATR 9 cut(s) 130, 137, 275, 299, 332, 346, 348, 382, 384
FaqI GGGAC 1 cut(s) 36
FauNDI CATATG 1 cut(s) 382
FriOI GRGCYC 1 cut(s) 207
GsuI CTGGAG 1 cut(s) 217
HinfI GANTC 4 cut(s) 165, 179, 281, 305
HphI GGTGA 2 cut(s) 144, 162
Hpy188III TCNNGA 2 cut(s) 200, 260
HpyAV CCTTC 1 cut(s) 15
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
Kzo9I GATC 1 cut(s) 228
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 4 cut(s) 92, 213, 247, 298
LweI GCATC 1 cut(s) 101
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MboII GAAGA 6 cut(s) 52, 55, 90, 101, 139, 387
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 5 cut(s) 158, 195, 353, 359, 374
MlyI GAGTC 2 cut(s) 173, 290
MnlI CCTC 6 cut(s) 26, 29, 94, 117, 197, 332
MseI TTAA 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 275
NdeI CATATG 1 cut(s) 382
NdeII GATC 1 cut(s) 228
NlaIV GGNNCC 1 cut(s) 320
NmeAIII GCCGAG 1 cut(s) 304
NspV TTCGAA 1 cut(s) 163
PfeI GAWTC 2 cut(s) 165, 305
PleI GAGTC 2 cut(s) 173, 289
PpsI GAGTC 2 cut(s) 173, 289
Psp124BI GAGCTC 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 320
SacI GAGCTC 1 cut(s) 207
SaqAI TTAA 1 cut(s) 242
Sau3AI GATC 1 cut(s) 228
SchI GAGTC 2 cut(s) 173, 290
SduI GDGCHC 1 cut(s) 207
SetI ASST 4 cut(s) 86, 207, 259, 395
SfaNI GCATC 1 cut(s) 101
SfuI TTCGAA 1 cut(s) 163
Sse9I AATT 5 cut(s) 158, 195, 353, 359, 374
SsiI CCGC 3 cut(s) 90, 267, 316
SstI GAGCTC 1 cut(s) 207
TaqI TCGA 1 cut(s) 163
TasI AATT 5 cut(s) 158, 195, 353, 359, 374
TfiI GAWTC 2 cut(s) 165, 305
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TspDTI ATGAA 1 cut(s) 369
TspGWI ACGGA 1 cut(s) 237
XapI RAATTY 4 cut(s) 195, 353, 359, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.