protein dimerization activity
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 80, 2117 |
| AccB1I | GGYRCC | 1 cut(s) | 3121 |
| AccBSI | CCGCTC | 2 cut(s) | 2287, 2572 |
| AccI | GTMKAC | 2 cut(s) | 1297, 3370 |
| AccII | CGCG | 2 cut(s) | 2468, 4621 |
| AciI | CCGC | 6 cut(s) | 359, 2285, 2552, 2570, 2598, 4621 |
| AcvI | CACGTG | 1 cut(s) | 3366 |
| AfaI | GTAC | 2 cut(s) | 2991, 4322 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 124, 1036, 2262, 2263, 2388, 2547, 2548, 2673 |
| AflIII | ACRYGT | 4 cut(s) | 1509, 1760, 3365, 3396 |
| AhlI | ACTAGT | 1 cut(s) | 2729 |
| AjnI | CCWGG | 3 cut(s) | 2508, 2545, 2793 |
| AleI | CACNNNNGTG | 1 cut(s) | 2244 |
| AluBI | AGCT | 9 cut(s) | 275, 1409, 1868, 2452, 2737, 2828, 3794, 4354, 4548 |
| AluI | AGCT | 9 cut(s) | 275, 1409, 1868, 2452, 2737, 2828, 3794, 4354, 4548 |
| Alw21I | GWGCWC | 3 cut(s) | 287, 2454, 2739 |
| Alw26I | GTCTC | 3 cut(s) | 1242, 3746, 4250 |
| Alw44I | GTGCAC | 1 cut(s) | 283 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 4104 |
| Ama87I | CYCGRG | 2 cut(s) | 2261, 2563 |
| AoxI | GGCC | 5 cut(s) | 2258, 2461, 2543, 2566, 2746 |
| ApaI | GGGCCC | 1 cut(s) | 2570 |
| ApaLI | GTGCAC | 1 cut(s) | 283 |
| ApeKI | GCWGC | 3 cut(s) | 3112, 3997, 4493 |
| AseI | ATTAAT | 1 cut(s) | 1143 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 267, 756, 1623, 2064, 4044 |
| AspLEI | GCGC | 3 cut(s) | 837, 2470, 4621 |
| AspS9I | GGNCC | 3 cut(s) | 2259, 2566, 2567 |
| AsuC2I | CCSGG | 6 cut(s) | 2257, 2262, 2263, 2542, 2564, 2565 |
| AsuHPI | GGTGA | 4 cut(s) | 2285, 2371, 2656, 3021 |
| AsuII | TTCGAA | 4 cut(s) | 2421, 2706, 3208, 4303 |
| AvaI | CYCGRG | 2 cut(s) | 2261, 2563 |
| BaeGI | GKGCMC | 3 cut(s) | 287, 2285, 2570 |
| BanI | GGYRCC | 1 cut(s) | 3121 |
| BanII | GRGCYC | 3 cut(s) | 2454, 2570, 2739 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3652, 3684 |
| BauI | CACGAG | 5 cut(s) | 204, 288, 2358, 2643, 2750 |
| BbrPI | CACGTG | 1 cut(s) | 3366 |
| BbsI | GAAGAC | 1 cut(s) | 4572 |
| Bbv12I | GWGCWC | 3 cut(s) | 287, 2454, 2739 |
| BbvI | GCAGC | 3 cut(s) | 3124, 3984, 4505 |
| BceAI | ACGGC | 1 cut(s) | 2263 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4457, 4491 |
| BciT130I | CCWGG | 3 cut(s) | 2510, 2547, 2795 |
| BciVI | GTATCC | 8 cut(s) | 728, 959, 1388, 1847, 2036, 2246, 2516, 2937 |
| BcnI | CCSGG | 6 cut(s) | 2257, 2262, 2263, 2542, 2564, 2565 |
| BcoDI | GTCTC | 3 cut(s) | 1242, 3746, 4250 |
| BcuI | ACTAGT | 1 cut(s) | 2729 |
| BfaI | CTAG | 8 cut(s) | 2399, 2471, 2684, 2730, 2756, 3657, 4407, 4419 |
| BfmI | CTRYAG | 1 cut(s) | 2581 |
| BfuI | GTATCC | 8 cut(s) | 728, 959, 1388, 1847, 2036, 2246, 2516, 2937 |
| BisI | GCNGC | 3 cut(s) | 3113, 3998, 4494 |
| BlsI | GCNGC | 3 cut(s) | 3114, 3999, 4495 |
| Bme1390I | CCNGG | 9 cut(s) | 2257, 2262, 2263, 2510, 2542, 2547, 2564, 2565, 2795 |
| BmeT110I | CYCGRG | 2 cut(s) | 2261, 2563 |
| BmgT120I | GGNCC | 3 cut(s) | 2259, 2566, 2567 |
| BmiI | GGNNCC | 4 cut(s) | 2436, 2568, 2721, 3123 |
| BmrFI | CCNGG | 9 cut(s) | 2257, 2262, 2263, 2510, 2542, 2547, 2564, 2565, 2795 |
| BmsI | GCATC | 9 cut(s) | 248, 1115, 3628, 3823, 3841, 3971, 3993, 4048, 4218 |
| BpiI | GAAGAC | 1 cut(s) | 4572 |
| Bpu14I | TTCGAA | 4 cut(s) | 2421, 2706, 3208, 4303 |
| BpuEI | CTTGAG | 2 cut(s) | 4297, 4554 |
| BpuMI | CCSGG | 6 cut(s) | 2257, 2262, 2263, 2542, 2564, 2565 |
| Bsa29I | ATCGAT | 1 cut(s) | 1701 |
| BsaAI | YACGTR | 2 cut(s) | 2993, 3366 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2974 |
| BsaJI | CCNNGG | 8 cut(s) | 2261, 2262, 2508, 2509, 2546, 2563, 2793, 2794 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2909, 2939, 3109, 3139 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 124, 1036, 2262, 2263, 2388, 2547, 2548, 2673 |
| Bse1I | ACTGG | 2 cut(s) | 47, 2445 |
| Bse3DI | GCAATG | 1 cut(s) | 567 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2974 |
| BseBI | CCWGG | 3 cut(s) | 2510, 2547, 2795 |
| BseCI | ATCGAT | 1 cut(s) | 1701 |
| BseDI | CCNNGG | 8 cut(s) | 2261, 2262, 2508, 2509, 2546, 2563, 2793, 2794 |
| BseJI | GATNNNNATC | 1 cut(s) | 2974 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 124, 1036, 2262, 2263, 2388, 2547, 2548, 2673 |
| BseMI | GCAATG | 1 cut(s) | 567 |
| BseMII | CTCAG | 4 cut(s) | 125, 160, 209, 2669 |
| BseNI | ACTGG | 2 cut(s) | 47, 2445 |
| BseSI | GKGCMC | 3 cut(s) | 287, 2285, 2570 |
| BseXI | GCAGC | 3 cut(s) | 3124, 3984, 4505 |
| Bsh1236I | CGCG | 2 cut(s) | 2468, 4621 |
| Bsh1285I | CGRYCG | 1 cut(s) | 4481 |
| BshFI | GGCC | 5 cut(s) | 2260, 2463, 2545, 2568, 2748 |
| BshNI | GGYRCC | 1 cut(s) | 3121 |
| BshVI | ATCGAT | 1 cut(s) | 1701 |
| BsiEI | CGRYCG | 1 cut(s) | 4481 |
| BsiHKAI | GWGCWC | 3 cut(s) | 287, 2454, 2739 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2261, 2563 |
| BsiSI | CCGG | 5 cut(s) | 2257, 2262, 2542, 2564, 3109 |
| BslFI | GGGAC | 3 cut(s) | 1030, 1423, 1672 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 124, 1036, 2262, 2263, 2388, 2547, 2548, 2673 |
| BsmAI | GTCTC | 3 cut(s) | 1242, 3746, 4250 |
| BsmFI | GGGAC | 3 cut(s) | 1030, 1423, 1672 |
| BsmI | GAATGC | 3 cut(s) | 1296, 3911, 4046 |
| BsnI | GGCC | 5 cut(s) | 2260, 2463, 2545, 2568, 2748 |
| BsoBI | CYCGRG | 2 cut(s) | 2261, 2563 |
| Bsp119I | TTCGAA | 4 cut(s) | 2421, 2706, 3208, 4303 |
| Bsp120I | GGGCCC | 1 cut(s) | 2566 |
| Bsp1286I | GDGCHC | 5 cut(s) | 287, 2285, 2454, 2570, 2739 |
| Bsp1407I | TGTACA | 1 cut(s) | 4320 |
| BspACI | CCGC | 6 cut(s) | 359, 2285, 2552, 2570, 2598, 4621 |
| BspANI | GGCC | 5 cut(s) | 2260, 2463, 2545, 2568, 2748 |
| BspCNI | CTCAG | 4 cut(s) | 126, 159, 208, 2668 |
| BspDI | ATCGAT | 1 cut(s) | 1701 |
| BspFNI | CGCG | 2 cut(s) | 2468, 4621 |
| BspHI | TCATGA | 1 cut(s) | 1809 |
| BspLI | GGNNCC | 4 cut(s) | 2436, 2568, 2721, 3123 |
| BspT104I | TTCGAA | 4 cut(s) | 2421, 2706, 3208, 4303 |
| BspT107I | GGYRCC | 1 cut(s) | 3121 |
| BsrBI | CCGCTC | 2 cut(s) | 2287, 2572 |
| BsrDI | GCAATG | 1 cut(s) | 567 |
| BsrGI | TGTACA | 1 cut(s) | 4320 |
| BsrI | ACTGG | 2 cut(s) | 47, 2445 |
| BssECI | CCNNGG | 8 cut(s) | 2261, 2262, 2508, 2509, 2546, 2563, 2793, 2794 |
| BssNAI | GTATAC | 1 cut(s) | 3371 |
| BssSI | CACGAG | 5 cut(s) | 204, 288, 2358, 2643, 2750 |
| Bst1107I | GTATAC | 1 cut(s) | 3371 |
| Bst2BI | CACGAG | 5 cut(s) | 204, 288, 2358, 2643, 2750 |
| Bst2UI | CCWGG | 3 cut(s) | 2510, 2547, 2795 |
| Bst6I | CTCTTC | 4 cut(s) | 357, 2411, 2696, 3678 |
| BstAUI | TGTACA | 1 cut(s) | 4320 |
| BstBAI | YACGTR | 2 cut(s) | 2993, 3366 |
| BstBI | TTCGAA | 4 cut(s) | 2421, 2706, 3208, 4303 |
| BstC8I | GCNNGC | 3 cut(s) | 2285, 2570, 3868 |
| BstDEI | CTNAG | 7 cut(s) | 134, 146, 195, 349, 2655, 3509, 4241 |
| BstEII | GGTNACC | 3 cut(s) | 2377, 2662, 3410 |
| BstFNI | CGCG | 2 cut(s) | 2468, 4621 |
| BstHHI | GCGC | 3 cut(s) | 837, 2470, 4621 |
| BstMAI | GTCTC | 3 cut(s) | 1242, 3746, 4250 |
| BstMCI | CGRYCG | 1 cut(s) | 4481 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 2284, 3121, 4003 |
| BstNI | CCWGG | 3 cut(s) | 2510, 2547, 2795 |
| BstNSI | RCATGY | 4 cut(s) | 1513, 1764, 3400, 3997 |
| BstPI | GGTNACC | 3 cut(s) | 2377, 2662, 3410 |
| BstSCI | CCNGG | 9 cut(s) | 2255, 2260, 2261, 2508, 2540, 2545, 2562, 2563, 2793 |
| BstSFI | CTRYAG | 1 cut(s) | 2581 |
| BstSLI | GKGCMC | 3 cut(s) | 287, 2285, 2570 |
| BstSNI | TACGTA | 1 cut(s) | 2993 |
| BstUI | CGCG | 2 cut(s) | 2468, 4621 |
| BstV1I | GCAGC | 3 cut(s) | 3124, 3984, 4505 |
| BstV2I | GAAGAC | 1 cut(s) | 4572 |
| BstZ17I | GTATAC | 1 cut(s) | 3371 |
| Bsu15I | ATCGAT | 1 cut(s) | 1701 |
| BsuI | GTATCC | 8 cut(s) | 728, 959, 1388, 1847, 2036, 2246, 2516, 2937 |
| BsuRI | GGCC | 5 cut(s) | 2260, 2463, 2545, 2568, 2748 |
| BsuTUI | ATCGAT | 1 cut(s) | 1701 |
| BtgZI | GCGATG | 2 cut(s) | 2529, 2814 |
| BtsIMutI | CAGTG | 5 cut(s) | 54, 2452, 2578, 2663, 4032 |
| Cac8I | GCNNGC | 3 cut(s) | 2285, 2570, 3868 |
| CaiI | CAGNNNCTG | 1 cut(s) | 4104 |
| CciI | TCATGA | 1 cut(s) | 1809 |
| CfoI | GCGC | 3 cut(s) | 837, 2470, 4621 |
| Cfr13I | GGNCC | 3 cut(s) | 2259, 2566, 2567 |
| Cfr9I | CCCGGG | 2 cut(s) | 2261, 2563 |
| ClaI | ATCGAT | 1 cut(s) | 1701 |
| CseI | GACGC | 1 cut(s) | 1283 |
| Csp6I | GTAC | 2 cut(s) | 2990, 4321 |
| CviAII | CATG | 7 cut(s) | 1510, 1761, 1810, 2336, 2672, 3397, 3994 |
| CviQI | GTAC | 2 cut(s) | 2990, 4321 |
| DdeI | CTNAG | 7 cut(s) | 134, 146, 195, 349, 2655, 3509, 4241 |
| DraI | TTTAAA | 9 cut(s) | 34, 739, 970, 1162, 1332, 1606, 2047, 2974, 3597 |
| Eam1104I | CTCTTC | 4 cut(s) | 357, 2411, 2696, 3678 |
| EarI | CTCTTC | 4 cut(s) | 357, 2411, 2696, 3678 |
| EciI | GGCGGA | 1 cut(s) | 2567 |
| Ecl136II | GAGCTC | 2 cut(s) | 2452, 2737 |
| Eco105I | TACGTA | 1 cut(s) | 2993 |
| Eco147I | AGGCCT | 2 cut(s) | 2463, 2748 |
| Eco24I | GRGCYC | 3 cut(s) | 2454, 2570, 2739 |
| Eco32I | GATATC | 2 cut(s) | 61, 1585 |
| Eco53kI | GAGCTC | 2 cut(s) | 2452, 2737 |
| Eco72I | CACGTG | 1 cut(s) | 3366 |
| Eco88I | CYCGRG | 2 cut(s) | 2261, 2563 |
| Eco91I | GGTNACC | 3 cut(s) | 2377, 2662, 3410 |
| EcoICRI | GAGCTC | 2 cut(s) | 2452, 2737 |
| EcoO65I | GGTNACC | 3 cut(s) | 2377, 2662, 3410 |
| EcoRI | GAATTC | 3 cut(s) | 752, 1619, 2060 |
| EcoRII | CCWGG | 3 cut(s) | 2508, 2545, 2793 |
| EcoRV | GATATC | 2 cut(s) | 61, 1585 |
| EcoT22I | ATGCAT | 1 cut(s) | 3986 |
| EcoT38I | GRGCYC | 3 cut(s) | 2454, 2570, 2739 |
| FaeI | CATG | 7 cut(s) | 1513, 1764, 1813, 2339, 2675, 3400, 3997 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 3204, 3236, 4184, 4216 |
| FaqI | GGGAC | 3 cut(s) | 1030, 1423, 1672 |
| FatI | CATG | 7 cut(s) | 1509, 1760, 1809, 2335, 2671, 3396, 3993 |
| FauI | CCCGC | 2 cut(s) | 2292, 2577 |
| FauNDI | CATATG | 2 cut(s) | 3018, 3711 |
| FblI | GTMKAC | 2 cut(s) | 1297, 3370 |
| Fnu4HI | GCNGC | 3 cut(s) | 3113, 3998, 4494 |
| FriOI | GRGCYC | 3 cut(s) | 2454, 2570, 2739 |
| Fsp4HI | GCNGC | 3 cut(s) | 3113, 3998, 4494 |
| FspBI | CTAG | 8 cut(s) | 2399, 2471, 2684, 2730, 2756, 3657, 4407, 4419 |
| GlaI | GCGC | 3 cut(s) | 836, 2469, 4620 |
| GluI | GCNGC | 3 cut(s) | 3113, 3998, 4494 |
| HaeIII | GGCC | 5 cut(s) | 2260, 2463, 2545, 2568, 2748 |
| HapII | CCGG | 5 cut(s) | 2257, 2262, 2542, 2564, 3109 |
| HgaI | GACGC | 1 cut(s) | 1283 |
| HhaI | GCGC | 3 cut(s) | 837, 2470, 4621 |
| Hin1II | CATG | 7 cut(s) | 1513, 1764, 1813, 2339, 2675, 3400, 3997 |
| Hin6I | GCGC | 3 cut(s) | 835, 2468, 4619 |
| HinP1I | GCGC | 3 cut(s) | 835, 2468, 4619 |
| HincII | GTYRAC | 3 cut(s) | 216, 3622, 4632 |
| HindII | GTYRAC | 3 cut(s) | 216, 3622, 4632 |
| HindIII | AAGCTT | 3 cut(s) | 273, 3792, 4546 |
| HinfI | GANTC | 9 cut(s) | 220, 245, 814, 1417, 3255, 3269, 3424, 4113, 4372 |
| HpaI | GTTAAC | 1 cut(s) | 216 |
| HpaII | CCGG | 5 cut(s) | 2257, 2262, 2542, 2564, 3109 |
| HphI | GGTGA | 4 cut(s) | 2285, 2371, 2656, 3021 |
| Hpy166II | GTNNAC | 8 cut(s) | 216, 285, 1298, 3371, 3622, 4145, 4321, 4632 |
| Hpy8I | GTNNAC | 8 cut(s) | 216, 285, 1298, 3371, 3622, 4145, 4321, 4632 |
| Hpy99I | CGWCG | 3 cut(s) | 1035, 1227, 2126 |
| HpyAV | CCTTC | 3 cut(s) | 3555, 3608, 4041 |
| HpyCH4IV | ACGT | 4 cut(s) | 1733, 2992, 3365, 4126 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 2284, 3121, 4003 |
| HpyF3I | CTNAG | 7 cut(s) | 134, 146, 195, 349, 2655, 3509, 4241 |
| HpySE526I | ACGT | 4 cut(s) | 1733, 2992, 3365, 4126 |
| Hsp92II | CATG | 7 cut(s) | 1513, 1764, 1813, 2339, 2675, 3400, 3997 |
| HspAI | GCGC | 3 cut(s) | 835, 2468, 4619 |
| KspAI | GTTAAC | 1 cut(s) | 216 |
| LmnI | GCTCC | 5 cut(s) | 2292, 2457, 2577, 2742, 4351 |
| Lsp1109I | GCAGC | 3 cut(s) | 3124, 3984, 4505 |
| LweI | GCATC | 9 cut(s) | 248, 1115, 3628, 3823, 3841, 3971, 3993, 4048, 4218 |
| MaeI | CTAG | 8 cut(s) | 2399, 2471, 2684, 2730, 2756, 3657, 4407, 4419 |
| MaeII | ACGT | 4 cut(s) | 1733, 2992, 3365, 4126 |
| MbiI | CCGCTC | 2 cut(s) | 2287, 2572 |
| MhlI | GDGCHC | 5 cut(s) | 287, 2285, 2454, 2570, 2739 |
| MlyI | GAGTC | 2 cut(s) | 808, 3418 |
| Mph1103I | ATGCAT | 1 cut(s) | 3986 |
| MroXI | GAANNNNTTC | 5 cut(s) | 267, 756, 1623, 2064, 4044 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1308, 2244, 4025, 4328 |
| MspI | CCGG | 5 cut(s) | 2257, 2262, 2542, 2564, 3109 |
| MspR9I | CCNGG | 9 cut(s) | 2257, 2262, 2263, 2510, 2542, 2547, 2564, 2565, 2795 |
| Mva1269I | GAATGC | 3 cut(s) | 1296, 3911, 4046 |
| MvaI | CCWGG | 3 cut(s) | 2510, 2547, 2795 |
| MvnI | CGCG | 2 cut(s) | 2468, 4621 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 2284, 3121, 4003 |
| NciI | CCSGG | 6 cut(s) | 2257, 2262, 2263, 2542, 2564, 2565 |
| NdeI | CATATG | 2 cut(s) | 3018, 3711 |
| NlaIII | CATG | 7 cut(s) | 1513, 1764, 1813, 2339, 2675, 3400, 3997 |
| NlaIV | GGNNCC | 4 cut(s) | 2436, 2568, 2721, 3123 |
| NmuCI | GTSAC | 7 cut(s) | 583, 602, 1210, 2248, 2377, 2533, 2662 |
| NsiI | ATGCAT | 1 cut(s) | 3986 |
| NspI | RCATGY | 4 cut(s) | 1513, 1764, 3400, 3997 |
| NspV | TTCGAA | 4 cut(s) | 2421, 2706, 3208, 4303 |
| OliI | CACNNNNGTG | 1 cut(s) | 2244 |
| PagI | TCATGA | 1 cut(s) | 1809 |
| PasI | CCCWGGG | 2 cut(s) | 2509, 2794 |
| PceI | AGGCCT | 2 cut(s) | 2463, 2748 |
| PciI | ACATGT | 3 cut(s) | 1509, 1760, 3396 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 663, 1291 |
| PctI | GAATGC | 3 cut(s) | 1296, 3911, 4046 |
| PdmI | GAANNNNTTC | 5 cut(s) | 267, 756, 1623, 2064, 4044 |
| PfeI | GAWTC | 7 cut(s) | 220, 245, 1417, 3255, 3269, 4113, 4372 |
| PkrI | GCNGC | 3 cut(s) | 3114, 3999, 4495 |
| PleI | GAGTC | 2 cut(s) | 808, 3418 |
| PmaCI | CACGTG | 1 cut(s) | 3366 |
| PmlI | CACGTG | 1 cut(s) | 3366 |
| PpsI | GAGTC | 2 cut(s) | 808, 3418 |
| Ppu21I | YACGTR | 2 cut(s) | 2993, 3366 |
| PscI | ACATGT | 3 cut(s) | 1509, 1760, 3396 |
| PshBI | ATTAAT | 1 cut(s) | 1143 |
| PsiI | TTATAA | 2 cut(s) | 80, 2117 |
| Psp124BI | GAGCTC | 2 cut(s) | 2454, 2739 |
| Psp6I | CCWGG | 3 cut(s) | 2508, 2545, 2793 |
| PspCI | CACGTG | 1 cut(s) | 3366 |
| PspEI | GGTNACC | 3 cut(s) | 2377, 2662, 3410 |
| PspGI | CCWGG | 3 cut(s) | 2508, 2545, 2793 |
| PspN4I | GGNNCC | 4 cut(s) | 2436, 2568, 2721, 3123 |
| PspOMI | GGGCCC | 1 cut(s) | 2566 |
| PspPI | GGNCC | 3 cut(s) | 2259, 2566, 2567 |
| PstNI | CAGNNNCTG | 1 cut(s) | 4104 |
| RsaI | GTAC | 2 cut(s) | 2991, 4322 |
| RsaNI | GTAC | 2 cut(s) | 2990, 4321 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1308, 2244, 4025, 4328 |
| SacI | GAGCTC | 2 cut(s) | 2454, 2739 |
| SatI | GCNGC | 3 cut(s) | 3113, 3998, 4494 |
| Sau96I | GGNCC | 3 cut(s) | 2259, 2566, 2567 |
| SchI | GAGTC | 2 cut(s) | 808, 3418 |
| ScrFI | CCNGG | 9 cut(s) | 2257, 2262, 2263, 2510, 2542, 2547, 2564, 2565, 2795 |
| SduI | GDGCHC | 5 cut(s) | 287, 2285, 2454, 2570, 2739 |
| SfaNI | GCATC | 9 cut(s) | 248, 1115, 3628, 3823, 3841, 3971, 3993, 4048, 4218 |
| SfcI | CTRYAG | 1 cut(s) | 2581 |
| SfuI | TTCGAA | 4 cut(s) | 2421, 2706, 3208, 4303 |
| SmaI | CCCGGG | 2 cut(s) | 2263, 2565 |
| SmiI | ATTTAAAT | 1 cut(s) | 2974 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1308, 2244, 4025, 4328 |
| SmlI | CTYRAG | 2 cut(s) | 4276, 4569 |
| SmoI | CTYRAG | 2 cut(s) | 4276, 4569 |
| SnaBI | TACGTA | 1 cut(s) | 2993 |
| SpeI | ACTAGT | 1 cut(s) | 2729 |
| SseBI | AGGCCT | 2 cut(s) | 2463, 2748 |
| SsiI | CCGC | 6 cut(s) | 359, 2285, 2552, 2570, 2598, 4621 |
| SspI | AATATT | 9 cut(s) | 39, 487, 550, 734, 965, 1601, 2042, 3692, 4253 |
| SspMI | CTAG | 8 cut(s) | 2399, 2471, 2684, 2730, 2756, 3657, 4407, 4419 |
| SstI | GAGCTC | 2 cut(s) | 2454, 2739 |
| StuI | AGGCCT | 2 cut(s) | 2463, 2748 |
| StyD4I | CCNGG | 9 cut(s) | 2255, 2260, 2261, 2508, 2540, 2545, 2562, 2563, 2793 |
| SwaI | ATTTAAAT | 1 cut(s) | 2974 |
| TaiI | ACGT | 4 cut(s) | 1736, 2995, 3368, 4129 |
| TaqII | GACCGA | 1 cut(s) | 4467 |
| TatI | WGTACW | 1 cut(s) | 4320 |
| TfiI | GAWTC | 7 cut(s) | 220, 245, 1417, 3255, 3269, 4113, 4372 |
| TscAI | CASTG | 5 cut(s) | 54, 2452, 2585, 2663, 4032 |
| TseFI | GTSAC | 7 cut(s) | 583, 602, 1210, 2248, 2377, 2533, 2662 |
| TseI | GCWGC | 3 cut(s) | 3112, 3997, 4493 |
| Tsp45I | GTSAC | 7 cut(s) | 583, 602, 1210, 2248, 2377, 2533, 2662 |
| TspGWI | ACGGA | 3 cut(s) | 2447, 2732, 3573 |
| TspMI | CCCGGG | 2 cut(s) | 2261, 2563 |
| TspRI | CASTG | 5 cut(s) | 54, 2452, 2585, 2663, 4032 |
| VneI | GTGCAC | 1 cut(s) | 283 |
| VspI | ATTAAT | 1 cut(s) | 1143 |
| XceI | RCATGY | 4 cut(s) | 1513, 1764, 3400, 3997 |
| XmaI | CCCGGG | 2 cut(s) | 2261, 2563 |
| XmiI | GTMKAC | 2 cut(s) | 1297, 3370 |
| XmnI | GAANNNNTTC | 5 cut(s) | 267, 756, 1623, 2064, 4044 |
| XspI | CTAG | 8 cut(s) | 2399, 2471, 2684, 2730, 2756, 3657, 4407, 4419 |
| Zsp2I | ATGCAT | 1 cut(s) | 3986 |