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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1308 |
| AatII | GACGTC | 1 cut(s) | 1306 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1333, 1684 |
| AccII | CGCG | 4 cut(s) | 244, 1145, 1436, 1554 |
| AciI | CCGC | 3 cut(s) | 1037, 1287, 1361 |
| AclWI | GGATC | 6 cut(s) | 1242, 1255, 1533, 1546, 1688, 1701 |
| AcsI | RAATTY | 4 cut(s) | 202, 768, 793, 1466 |
| AcuI | CTGAAG | 2 cut(s) | 348, 880 |
| AcyI | GRCGYC | 1 cut(s) | 1303 |
| AfaI | GTAC | 2 cut(s) | 996, 1007 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 575, 900, 1129, 1293, 1333, 1420, 1684 |
| AflII | CTTAAG | 1 cut(s) | 1291 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 483 |
| AhlI | ACTAGT | 1 cut(s) | 821 |
| AjnI | CCWGG | 5 cut(s) | 247, 545, 1127, 1418, 2040 |
| AluBI | AGCT | 6 cut(s) | 1184, 1192, 1240, 1475, 1483, 1752 |
| AluI | AGCT | 6 cut(s) | 1184, 1192, 1240, 1475, 1483, 1752 |
| Alw21I | GWGCWC | 3 cut(s) | 1194, 1485, 1754 |
| Alw26I | GTCTC | 1 cut(s) | 267 |
| AlwI | GGATC | 6 cut(s) | 1242, 1255, 1533, 1546, 1688, 1701 |
| ApaI | GGGCCC | 2 cut(s) | 874, 1300 |
| ApoI | RAATTY | 4 cut(s) | 202, 768, 793, 1466 |
| AseI | ATTAAT | 3 cut(s) | 525, 593, 2022 |
| AspLEI | GCGC | 2 cut(s) | 246, 1436 |
| AspS9I | GGNCC | 6 cut(s) | 861, 870, 871, 1296, 1297, 1894 |
| AsuC2I | CCSGG | 1 cut(s) | 1898 |
| AsuHPI | GGTGA | 3 cut(s) | 7, 1112, 1403 |
| AsuII | TTCGAA | 1 cut(s) | 1470 |
| BaeGI | GKGCMC | 3 cut(s) | 189, 874, 1300 |
| BamHI | GGATCC | 3 cut(s) | 1247, 1538, 1693 |
| BanII | GRGCYC | 7 cut(s) | 874, 1062, 1194, 1300, 1485, 1754, 1846 |
| BauI | CACGAG | 4 cut(s) | 875, 1100, 1391, 1496 |
| BbsI | GAAGAC | 1 cut(s) | 980 |
| Bbv12I | GWGCWC | 3 cut(s) | 1194, 1485, 1754 |
| BccI | CCATC | 9 cut(s) | 448, 571, 627, 900, 923, 1132, 1214, 1423, 1505 |
| BceAI | ACGGC | 2 cut(s) | 166, 822 |
| BciT130I | CCWGG | 5 cut(s) | 249, 547, 1129, 1420, 2042 |
| BcnI | CCSGG | 1 cut(s) | 1898 |
| BcoDI | GTCTC | 1 cut(s) | 267 |
| BcuI | ACTAGT | 1 cut(s) | 821 |
| BfaI | CTAG | 6 cut(s) | 822, 890, 1185, 1380, 1476, 1502 |
| BfrI | CTTAAG | 1 cut(s) | 1291 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1295 |
| Bme1390I | CCNGG | 6 cut(s) | 249, 547, 1129, 1420, 1898, 2042 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 483 |
| BmgT120I | GGNCC | 6 cut(s) | 861, 870, 871, 1296, 1297, 1894 |
| BmiI | GGNNCC | 6 cut(s) | 872, 1249, 1298, 1540, 1695, 1768 |
| BmrFI | CCNGG | 6 cut(s) | 249, 547, 1129, 1420, 1898, 2042 |
| BmrI | ACTGGG | 2 cut(s) | 858, 1397 |
| BmuI | ACTGGG | 2 cut(s) | 858, 1397 |
| BpiI | GAAGAC | 1 cut(s) | 980 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 959, 991 |
| Bpu10I | CCTNAGC | 1 cut(s) | 742 |
| Bpu14I | TTCGAA | 1 cut(s) | 1470 |
| BpuEI | CTTGAG | 1 cut(s) | 999 |
| BpuMI | CCSGG | 1 cut(s) | 1898 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1923 |
| BsaHI | GRCGYC | 1 cut(s) | 1303 |
| BsaJI | CCNNGG | 5 cut(s) | 247, 1128, 1257, 1327, 1419 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 575, 900, 1129, 1293, 1333, 1420, 1684 |
| Bse1I | ACTGG | 6 cut(s) | 137, 304, 864, 998, 1403, 1761 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1923 |
| BseBI | CCWGG | 5 cut(s) | 249, 547, 1129, 1420, 2042 |
| BseDI | CCNNGG | 5 cut(s) | 247, 1128, 1257, 1327, 1419 |
| BseGI | GGATG | 8 cut(s) | 459, 1032, 1124, 1277, 1356, 1415, 1568, 1906 |
| BseJI | GATNNNNATC | 1 cut(s) | 1923 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 575, 900, 1129, 1293, 1333, 1420, 1684 |
| BseMII | CTCAG | 2 cut(s) | 38, 996 |
| BseNI | ACTGG | 6 cut(s) | 137, 304, 864, 998, 1403, 1761 |
| BseSI | GKGCMC | 3 cut(s) | 189, 874, 1300 |
| Bsh1236I | CGCG | 4 cut(s) | 244, 1145, 1436, 1554 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1194, 1485, 1754 |
| BsiSI | CCGG | 1 cut(s) | 1897 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 575, 900, 1129, 1293, 1333, 1420, 1684 |
| BsmAI | GTCTC | 1 cut(s) | 267 |
| Bsp119I | TTCGAA | 1 cut(s) | 1470 |
| Bsp120I | GGGCCC | 2 cut(s) | 870, 1296 |
| Bsp1286I | GDGCHC | 8 cut(s) | 189, 874, 1062, 1194, 1300, 1485, 1754, 1846 |
| Bsp143I | GATC | 3 cut(s) | 1247, 1538, 1693 |
| Bsp19I | CCATGG | 1 cut(s) | 1257 |
| Bsp68I | TCGCGA | 1 cut(s) | 1554 |
| BspACI | CCGC | 3 cut(s) | 1037, 1287, 1361 |
| BspCNI | CTCAG | 2 cut(s) | 37, 995 |
| BspFNI | CGCG | 4 cut(s) | 244, 1145, 1436, 1554 |
| BspHI | TCATGA | 1 cut(s) | 2151 |
| BspLI | GGNNCC | 6 cut(s) | 872, 1249, 1298, 1540, 1695, 1768 |
| BspPI | GGATC | 6 cut(s) | 1242, 1255, 1533, 1546, 1688, 1701 |
| BspT104I | TTCGAA | 1 cut(s) | 1470 |
| BspTI | CTTAAG | 1 cut(s) | 1291 |
| BsrI | ACTGG | 6 cut(s) | 137, 304, 864, 998, 1403, 1761 |
| BssECI | CCNNGG | 5 cut(s) | 247, 1128, 1257, 1327, 1419 |
| BssMI | GATC | 3 cut(s) | 1247, 1538, 1693 |
| BssNI | GRCGYC | 1 cut(s) | 1303 |
| BssSI | CACGAG | 4 cut(s) | 875, 1100, 1391, 1496 |
| BssT1I | CCWWGG | 2 cut(s) | 1257, 1327 |
| Bst2BI | CACGAG | 4 cut(s) | 875, 1100, 1391, 1496 |
| Bst2UI | CCWGG | 5 cut(s) | 249, 547, 1129, 1420, 2042 |
| Bst4CI | ACNGT | 4 cut(s) | 542, 1114, 1870, 2128 |
| BstACI | GRCGYC | 1 cut(s) | 1303 |
| BstAFI | CTTAAG | 1 cut(s) | 1291 |
| BstBI | TTCGAA | 1 cut(s) | 1470 |
| BstC8I | GCNNGC | 3 cut(s) | 811, 815, 2096 |
| BstDEI | CTNAG | 6 cut(s) | 24, 400, 742, 982, 1608, 1700 |
| BstDSI | CCRYGG | 1 cut(s) | 1257 |
| BstEII | GGTNACC | 2 cut(s) | 1118, 1409 |
| BstF5I | GGATG | 8 cut(s) | 459, 1032, 1124, 1277, 1356, 1415, 1568, 1906 |
| BstFNI | CGCG | 4 cut(s) | 244, 1145, 1436, 1554 |
| BstHHI | GCGC | 2 cut(s) | 246, 1436 |
| BstKTI | GATC | 3 cut(s) | 1250, 1541, 1696 |
| BstMAI | GTCTC | 1 cut(s) | 267 |
| BstMBI | GATC | 3 cut(s) | 1247, 1538, 1693 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 410, 1295 |
| BstNI | CCWGG | 5 cut(s) | 249, 547, 1129, 1420, 2042 |
| BstNSI | RCATGY | 2 cut(s) | 952, 2098 |
| BstPI | GGTNACC | 2 cut(s) | 1118, 1409 |
| BstSCI | CCNGG | 6 cut(s) | 247, 545, 1127, 1418, 1896, 2040 |
| BstSLI | GKGCMC | 3 cut(s) | 189, 874, 1300 |
| BstUI | CGCG | 4 cut(s) | 244, 1145, 1436, 1554 |
| BstV2I | GAAGAC | 1 cut(s) | 980 |
| BstX2I | RGATCY | 3 cut(s) | 1247, 1538, 1693 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 839, 1258 |
| BstYI | RGATCY | 3 cut(s) | 1247, 1538, 1693 |
| BtgI | CCRYGG | 1 cut(s) | 1257 |
| BtgZI | GCGATG | 2 cut(s) | 1278, 1569 |
| BtsCI | GGATG | 8 cut(s) | 459, 1032, 1124, 1277, 1356, 1415, 1568, 1906 |
| BtsIMutI | CAGTG | 3 cut(s) | 1119, 1410, 1754 |
| BtuMI | TCGCGA | 1 cut(s) | 1554 |
| Cac8I | GCNNGC | 3 cut(s) | 811, 815, 2096 |
| CciI | TCATGA | 1 cut(s) | 2151 |
| CfoI | GCGC | 2 cut(s) | 246, 1436 |
| Cfr13I | GGNCC | 6 cut(s) | 861, 870, 871, 1296, 1297, 1894 |
| Csp6I | GTAC | 2 cut(s) | 995, 1006 |
| CviQI | GTAC | 2 cut(s) | 995, 1006 |
| DdeI | CTNAG | 6 cut(s) | 24, 400, 742, 982, 1608, 1700 |
| DpnI | GATC | 3 cut(s) | 1249, 1540, 1695 |
| DpnII | GATC | 3 cut(s) | 1247, 1538, 1693 |
| DraI | TTTAAA | 1 cut(s) | 786 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1308 |
| DriI | GACNNNNNGTC | 1 cut(s) | 483 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1308 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 483 |
| Ecl136II | GAGCTC | 3 cut(s) | 1192, 1483, 1752 |
| Eco130I | CCWWGG | 2 cut(s) | 1257, 1327 |
| Eco147I | AGGCCT | 3 cut(s) | 1203, 1494, 1741 |
| Eco24I | GRGCYC | 7 cut(s) | 874, 1062, 1194, 1300, 1485, 1754, 1846 |
| Eco32I | GATATC | 1 cut(s) | 71 |
| Eco53kI | GAGCTC | 3 cut(s) | 1192, 1483, 1752 |
| Eco57I | CTGAAG | 2 cut(s) | 348, 880 |
| Eco91I | GGTNACC | 2 cut(s) | 1118, 1409 |
| EcoICRI | GAGCTC | 3 cut(s) | 1192, 1483, 1752 |
| EcoO109I | RGGNCCY | 2 cut(s) | 870, 1296 |
| EcoO65I | GGTNACC | 2 cut(s) | 1118, 1409 |
| EcoRI | GAATTC | 1 cut(s) | 1466 |
| EcoRII | CCWGG | 5 cut(s) | 247, 545, 1127, 1418, 2040 |
| EcoRV | GATATC | 1 cut(s) | 71 |
| EcoT14I | CCWWGG | 2 cut(s) | 1257, 1327 |
| EcoT22I | ATGCAT | 5 cut(s) | 390, 950, 1916, 2096, 2100 |
| EcoT38I | GRGCYC | 7 cut(s) | 874, 1062, 1194, 1300, 1485, 1754, 1846 |
| ErhI | CCWWGG | 2 cut(s) | 1257, 1327 |
| FauI | CCCGC | 3 cut(s) | 1044, 1294, 1368 |
| FauNDI | CATATG | 1 cut(s) | 51 |
| FokI | GGATG | 8 cut(s) | 466, 1019, 1111, 1284, 1343, 1402, 1575, 1913 |
| FriOI | GRGCYC | 7 cut(s) | 874, 1062, 1194, 1300, 1485, 1754, 1846 |
| FspBI | CTAG | 6 cut(s) | 822, 890, 1185, 1380, 1476, 1502 |
| GlaI | GCGC | 2 cut(s) | 245, 1435 |
| HapII | CCGG | 1 cut(s) | 1897 |
| HhaI | GCGC | 2 cut(s) | 246, 1436 |
| Hin1I | GRCGYC | 1 cut(s) | 1303 |
| Hin6I | GCGC | 2 cut(s) | 244, 1434 |
| HinP1I | GCGC | 2 cut(s) | 244, 1434 |
| HindIII | AAGCTT | 1 cut(s) | 1238 |
| HinfI | GANTC | 5 cut(s) | 847, 941, 970, 1874, 2134 |
| HpaII | CCGG | 1 cut(s) | 1897 |
| HphI | GGTGA | 3 cut(s) | 7, 1112, 1403 |
| Hpy166II | GTNNAC | 1 cut(s) | 1051 |
| Hpy188I | TCNGA | 7 cut(s) | 27, 367, 1163, 1341, 1454, 1640, 1782 |
| Hpy188III | TCNNGA | 5 cut(s) | 630, 1016, 1076, 1553, 2152 |
| Hpy8I | GTNNAC | 1 cut(s) | 1051 |
| Hpy99I | CGWCG | 2 cut(s) | 1305, 1314 |
| HpyAV | CCTTC | 6 cut(s) | 118, 403, 434, 475, 569, 904 |
| HpyCH4III | ACNGT | 4 cut(s) | 542, 1114, 1870, 2128 |
| HpyCH4IV | ACGT | 1 cut(s) | 1303 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 410, 1295 |
| HpyF3I | CTNAG | 6 cut(s) | 24, 400, 742, 982, 1608, 1700 |
| HpySE526I | ACGT | 1 cut(s) | 1303 |
| Hsp92I | GRCGYC | 1 cut(s) | 1303 |
| HspAI | GCGC | 2 cut(s) | 244, 1434 |
| Kzo9I | GATC | 3 cut(s) | 1247, 1538, 1693 |
| LmnI | GCTCC | 4 cut(s) | 279, 1197, 1488, 1749 |
| MaeI | CTAG | 6 cut(s) | 822, 890, 1185, 1380, 1476, 1502 |
| MaeII | ACGT | 1 cut(s) | 1303 |
| MalI | GATC | 3 cut(s) | 1249, 1540, 1695 |
| MboI | GATC | 3 cut(s) | 1247, 1538, 1693 |
| MboII | GAAGA | 2 cut(s) | 643, 980 |
| MfeI | CAATTG | 4 cut(s) | 570, 1024, 1573, 1647 |
| MflI | RGATCY | 3 cut(s) | 1247, 1538, 1693 |
| MhlI | GDGCHC | 8 cut(s) | 189, 874, 1062, 1194, 1300, 1485, 1754, 1846 |
| MlyI | GAGTC | 2 cut(s) | 935, 1883 |
| MmeI | TCCRAC | 4 cut(s) | 257, 418, 881, 904 |
| Mph1103I | ATGCAT | 5 cut(s) | 390, 950, 1916, 2096, 2100 |
| MslI | CAYNNNNRTG | 2 cut(s) | 949, 1256 |
| MspCI | CTTAAG | 1 cut(s) | 1291 |
| MspI | CCGG | 1 cut(s) | 1897 |
| MspR9I | CCNGG | 6 cut(s) | 249, 547, 1129, 1420, 1898, 2042 |
| MunI | CAATTG | 4 cut(s) | 570, 1024, 1573, 1647 |
| MvaI | CCWGG | 5 cut(s) | 249, 547, 1129, 1420, 2042 |
| MvnI | CGCG | 4 cut(s) | 244, 1145, 1436, 1554 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 410, 1295 |
| NciI | CCSGG | 1 cut(s) | 1898 |
| NcoI | CCATGG | 1 cut(s) | 1257 |
| NdeI | CATATG | 1 cut(s) | 51 |
| NdeII | GATC | 3 cut(s) | 1247, 1538, 1693 |
| NlaIV | GGNNCC | 6 cut(s) | 872, 1249, 1298, 1540, 1695, 1768 |
| NmuCI | GTSAC | 6 cut(s) | 146, 1028, 1118, 1352, 1409, 1903 |
| NruI | TCGCGA | 1 cut(s) | 1554 |
| NsiI | ATGCAT | 5 cut(s) | 390, 950, 1916, 2096, 2100 |
| NspI | RCATGY | 2 cut(s) | 952, 2098 |
| NspV | TTCGAA | 1 cut(s) | 1470 |
| PaeI | GCATGC | 1 cut(s) | 2098 |
| PagI | TCATGA | 1 cut(s) | 2151 |
| PceI | AGGCCT | 3 cut(s) | 1203, 1494, 1741 |
| PfeI | GAWTC | 3 cut(s) | 847, 970, 2134 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1333, 1684 |
| PleI | GAGTC | 2 cut(s) | 935, 1882 |
| PpsI | GAGTC | 2 cut(s) | 935, 1882 |
| PshBI | ATTAAT | 3 cut(s) | 525, 593, 2022 |
| Psp124BI | GAGCTC | 3 cut(s) | 1194, 1485, 1754 |
| Psp6I | CCWGG | 5 cut(s) | 247, 545, 1127, 1418, 2040 |
| PspEI | GGTNACC | 2 cut(s) | 1118, 1409 |
| PspGI | CCWGG | 5 cut(s) | 247, 545, 1127, 1418, 2040 |
| PspN4I | GGNNCC | 6 cut(s) | 872, 1249, 1298, 1540, 1695, 1768 |
| PspOMI | GGGCCC | 2 cut(s) | 870, 1296 |
| PspPI | GGNCC | 6 cut(s) | 861, 870, 871, 1296, 1297, 1894 |
| PsuI | RGATCY | 3 cut(s) | 1247, 1538, 1693 |
| RruI | TCGCGA | 1 cut(s) | 1554 |
| RsaI | GTAC | 2 cut(s) | 996, 1007 |
| RsaNI | GTAC | 2 cut(s) | 995, 1006 |
| RseI | CAYNNNNRTG | 2 cut(s) | 949, 1256 |
| SacI | GAGCTC | 3 cut(s) | 1194, 1485, 1754 |
| Sau3AI | GATC | 3 cut(s) | 1247, 1538, 1693 |
| Sau96I | GGNCC | 6 cut(s) | 861, 870, 871, 1296, 1297, 1894 |
| SchI | GAGTC | 2 cut(s) | 935, 1883 |
| ScrFI | CCNGG | 6 cut(s) | 249, 547, 1129, 1420, 1898, 2042 |
| SduI | GDGCHC | 8 cut(s) | 189, 874, 1062, 1194, 1300, 1485, 1754, 1846 |
| SfuI | TTCGAA | 1 cut(s) | 1470 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 949, 1256 |
| SmlI | CTYRAG | 2 cut(s) | 1014, 1291 |
| SmoI | CTYRAG | 2 cut(s) | 1014, 1291 |
| SpeI | ACTAGT | 1 cut(s) | 821 |
| SphI | GCATGC | 1 cut(s) | 2098 |
| SseBI | AGGCCT | 3 cut(s) | 1203, 1494, 1741 |
| SsiI | CCGC | 3 cut(s) | 1037, 1287, 1361 |
| SspI | AATATT | 3 cut(s) | 181, 529, 663 |
| SspMI | CTAG | 6 cut(s) | 822, 890, 1185, 1380, 1476, 1502 |
| SstI | GAGCTC | 3 cut(s) | 1194, 1485, 1754 |
| StuI | AGGCCT | 3 cut(s) | 1203, 1494, 1741 |
| StyD4I | CCNGG | 6 cut(s) | 247, 545, 1127, 1418, 1896, 2040 |
| StyI | CCWWGG | 2 cut(s) | 1257, 1327 |
| TaaI | ACNGT | 4 cut(s) | 542, 1114, 1870, 2128 |
| TaiI | ACGT | 1 cut(s) | 1306 |
| TaqI | TCGA | 5 cut(s) | 200, 629, 1179, 1470, 1927 |
| TfiI | GAWTC | 3 cut(s) | 847, 970, 2134 |
| TscAI | CASTG | 3 cut(s) | 1119, 1410, 1761 |
| TseFI | GTSAC | 6 cut(s) | 146, 1028, 1118, 1352, 1409, 1903 |
| Tsp45I | GTSAC | 6 cut(s) | 146, 1028, 1118, 1352, 1409, 1903 |
| TspGWI | ACGGA | 2 cut(s) | 993, 1759 |
| TspRI | CASTG | 3 cut(s) | 1119, 1410, 1761 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1333, 1684 |
| Vha464I | CTTAAG | 1 cut(s) | 1291 |
| VspI | ATTAAT | 3 cut(s) | 525, 593, 2022 |
| XapI | RAATTY | 4 cut(s) | 202, 768, 793, 1466 |
| XceI | RCATGY | 2 cut(s) | 952, 2098 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 881, 1264 |
| XspI | CTAG | 6 cut(s) | 822, 890, 1185, 1380, 1476, 1502 |
| ZraI | GACGTC | 1 cut(s) | 1304 |
| Zsp2I | ATGCAT | 5 cut(s) | 390, 950, 1916, 2096, 2100 |