pycom02g08600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000158
Physical Location & Seq
Forward (+)
5947537 .. 5948649
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g08600.3

Sequence Viewer

Length: 867 bp
ATGCAAATGCGCGCATCTCTTTATTTGTTTATAATTTTCAATTTTTTATTTTTTTCGAACGCGGAAATTTCCAATTTTTTTATTGATTTTTTTTGCAAGTTGAACAATTGTTTAGCTTTATCTAGTAATGGAATGAGATTTATTCCGGATTTTTACGTTCGAGGCCCGTCAATCGAGAGATGTGAATTATTTAAGAGAGAAAAATATCTGTACTCTTTTAACGTAAAATTAAGATTGAGTGGTCTAAATCTTCATGTATGCAAATTTCGAACACAAAAATTCAGAATAAATCTCTATCTCATTGACTCTGATGTACAACTGTACATGCATAGGGTTGTCTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTGTTCCCCTTCCGTATTCCAGTCACATCGCTGTGTCACATCCCGGTCCGGGGCGGATCACTTTCCAGGCCCGCTCCACCACCGTAGCACGATATTGTCCGCTTTGGGCTTACCATTCCCTCACGGTTTTGTTTTTGGGAACTCACGAGCAACTTCCCAGTGGGTCACCCATCATGGGATTGCTCTAGCCCCCTTCTCGCTTAACTTCGGAGTTCCTACGGAACCCGAAGCCAGTGAGCTCCCAAAAGGCCTTGTGCTAGGTAGGGATTGGAATATACATATAAGGATCACTCCCCTGGGCGATGTGGGATGTCACAATCCACCCCCCTTAGGGGCCCGACGTCCTCGTCGGCACATTTCCGGCCAGGGATTGACTCTGATACCAATTGTCACATCCCGGATACCAGAGCCAATCCCTGGCCGGAAATGTGCCGACGAGGACGTCGGATGTGACAACCCGTTCCAAATTTTACGTTTTTATTTTATTTTAAAAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

289

Amino Acids

33.07

Weight (kDa)

9.52

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 32
AasI GACNNNNNNGTC 2 cut(s) 714, 809
AatII GACGTC 2 cut(s) 712, 813
AccB7I CCANNNNNTGG 1 cut(s) 785
AccBSI CCGCTC 1 cut(s) 442
AccII CGCG 2 cut(s) 12, 62
AccIII TCCGGA 1 cut(s) 145
AciI CCGC 4 cut(s) 62, 422, 440, 468
AclWI GGATC 2 cut(s) 432, 662
AcoI YGGCCR 2 cut(s) 730, 787
AcsI RAATTY 4 cut(s) 66, 263, 278, 834
AcyI GRCGYC 2 cut(s) 709, 810
AfaI GTAC 3 cut(s) 212, 315, 323
AfiI CCNNNNNNNGG 7 cut(s) 417, 418, 543, 698, 699, 700, 785
AgsI TTSAA 2 cut(s) 40, 103
AjnI CCWGG 4 cut(s) 433, 663, 732, 784
AluBI AGCT 2 cut(s) 116, 607
AluI AGCT 2 cut(s) 116, 607
Alw21I GWGCWC 1 cut(s) 609
AlwI GGATC 2 cut(s) 432, 662
Aor13HI TCCGGA 1 cut(s) 145
AoxI GGCC 6 cut(s) 163, 436, 616, 702, 730, 787
ApaI GGGCCC 1 cut(s) 706
ApoI RAATTY 4 cut(s) 66, 263, 278, 834
AspLEI GCGC 2 cut(s) 12, 14
AspS9I GGNCC 5 cut(s) 164, 414, 437, 702, 703
AsuC2I CCSGG 3 cut(s) 412, 418, 766
AsuHPI GGTGA 1 cut(s) 526
AsuII TTCGAA 2 cut(s) 56, 268
AvaII GGWCC 1 cut(s) 414
AxyI CCTNAGG 1 cut(s) 697
BaeGI GKGCMC 1 cut(s) 706
BanII GRGCYC 2 cut(s) 609, 706
BauI CACGAG 1 cut(s) 513
Bbv12I GWGCWC 1 cut(s) 609
BccI CCATC 1 cut(s) 546
BciT130I CCWGG 4 cut(s) 435, 665, 734, 786
BciVI GTATCC 1 cut(s) 762
BcnI CCSGG 3 cut(s) 412, 418, 766
BfaI CTAG 3 cut(s) 123, 554, 626
BfuI GTATCC 1 cut(s) 762
Bme1390I CCNGG 7 cut(s) 412, 418, 435, 665, 734, 766, 786
Bme18I GGWCC 1 cut(s) 414
BmgT120I GGNCC 5 cut(s) 164, 414, 437, 702, 703
BmiI GGNNCC 3 cut(s) 591, 703, 704
BmrFI CCNGG 7 cut(s) 412, 418, 435, 665, 734, 766, 786
BmrI ACTGGG 1 cut(s) 520
BmsI GCATC 1 cut(s) 23
BmuI ACTGGG 1 cut(s) 520
Bpu14I TTCGAA 2 cut(s) 56, 268
BpuMI CCSGG 3 cut(s) 412, 418, 766
BsaHI GRCGYC 2 cut(s) 709, 810
BsaJI CCNNGG 5 cut(s) 417, 663, 664, 733, 784
BsaWI WCCGGW 1 cut(s) 145
Bsc4I CCNNNNNNNGG 7 cut(s) 417, 418, 543, 698, 699, 700, 785
Bse1I ACTGG 3 cut(s) 388, 526, 600
Bse21I CCTNAGG 1 cut(s) 697
BseAI TCCGGA 1 cut(s) 145
BseBI CCWGG 4 cut(s) 435, 665, 734, 786
BseDI CCNNGG 5 cut(s) 417, 663, 664, 733, 784
BseGI GGATG 4 cut(s) 407, 683, 761, 821
BseLI CCNNNNNNNGG 7 cut(s) 417, 418, 543, 698, 699, 700, 785
BseNI ACTGG 3 cut(s) 388, 526, 600
BsePI GCGCGC 1 cut(s) 10
BseSI GKGCMC 1 cut(s) 706
Bsh1236I CGCG 2 cut(s) 12, 62
BshFI GGCC 6 cut(s) 165, 438, 618, 704, 732, 789
BsiHKAI GWGCWC 1 cut(s) 609
BsiSI CCGG 6 cut(s) 146, 412, 417, 729, 766, 790
BslI CCNNNNNNNGG 7 cut(s) 417, 418, 543, 698, 699, 700, 785
BsnI GGCC 6 cut(s) 165, 438, 618, 704, 732, 789
Bsp119I TTCGAA 2 cut(s) 56, 268
Bsp120I GGGCCC 1 cut(s) 702
Bsp1286I GDGCHC 2 cut(s) 609, 706
Bsp13I TCCGGA 1 cut(s) 145
Bsp1407I TGTACA 2 cut(s) 313, 321
Bsp143I GATC 2 cut(s) 424, 654
BspACI CCGC 4 cut(s) 62, 422, 440, 468
BspANI GGCC 6 cut(s) 165, 438, 618, 704, 732, 789
BspEI TCCGGA 1 cut(s) 145
BspFNI CGCG 2 cut(s) 12, 62
BspLI GGNNCC 3 cut(s) 591, 703, 704
BspPI GGATC 2 cut(s) 432, 662
BspT104I TTCGAA 2 cut(s) 56, 268
BsrBI CCGCTC 1 cut(s) 442
BsrGI TGTACA 2 cut(s) 313, 321
BsrI ACTGG 3 cut(s) 388, 526, 600
BssECI CCNNGG 5 cut(s) 417, 663, 664, 733, 784
BssHII GCGCGC 1 cut(s) 10
BssMI GATC 2 cut(s) 424, 654
BssNI GRCGYC 2 cut(s) 709, 810
BssSI CACGAG 1 cut(s) 513
Bst2BI CACGAG 1 cut(s) 513
Bst2UI CCWGG 4 cut(s) 435, 665, 734, 786
Bst4CI ACNGT 3 cut(s) 321, 452, 494
BstACI GRCGYC 2 cut(s) 709, 810
BstAUI TGTACA 2 cut(s) 313, 321
BstBI TTCGAA 2 cut(s) 56, 268
BstC8I GCNNGC 2 cut(s) 12, 440
BstDEI CTNAG 1 cut(s) 697
BstEII GGTNACC 1 cut(s) 532
BstF5I GGATG 4 cut(s) 407, 683, 761, 821
BstFNI CGCG 2 cut(s) 12, 62
BstHHI GCGC 2 cut(s) 12, 14
BstKTI GATC 2 cut(s) 427, 657
BstMBI GATC 2 cut(s) 424, 654
BstNI CCWGG 4 cut(s) 435, 665, 734, 786
BstNSI RCATGY 1 cut(s) 328
BstPI GGTNACC 1 cut(s) 532
BstSCI CCNGG 7 cut(s) 410, 416, 433, 663, 732, 764, 784
BstSLI GKGCMC 1 cut(s) 706
BstUI CGCG 2 cut(s) 12, 62
Bsu36I CCTNAGG 1 cut(s) 697
BsuI GTATCC 1 cut(s) 762
BsuRI GGCC 6 cut(s) 165, 438, 618, 704, 732, 789
BtgZI GCGATG 2 cut(s) 380, 684
BtsCI GGATG 4 cut(s) 407, 683, 761, 821
BtsIMutI CAGTG 2 cut(s) 533, 607
Cac8I GCNNGC 2 cut(s) 12, 440
CfoI GCGC 2 cut(s) 12, 14
Cfr13I GGNCC 5 cut(s) 164, 414, 437, 702, 703
CpoI CGGWCCG 1 cut(s) 414
Csp6I GTAC 3 cut(s) 211, 314, 322
CspI CGGWCCG 1 cut(s) 414
CviAII CATG 3 cut(s) 254, 325, 542
CviQI GTAC 3 cut(s) 211, 314, 322
DdeI CTNAG 1 cut(s) 697
DpnI GATC 2 cut(s) 426, 656
DpnII GATC 2 cut(s) 424, 654
DraI TTTAAA 1 cut(s) 858
DrdI GACNNNNNNGTC 2 cut(s) 714, 809
DseDI GACNNNNNNGTC 2 cut(s) 714, 809
EaeI YGGCCR 2 cut(s) 730, 787
EciI GGCGGA 1 cut(s) 437
Ecl136II GAGCTC 1 cut(s) 607
Eco147I AGGCCT 1 cut(s) 618
Eco24I GRGCYC 2 cut(s) 609, 706
Eco47I GGWCC 1 cut(s) 414
Eco53kI GAGCTC 1 cut(s) 607
Eco81I CCTNAGG 1 cut(s) 697
Eco91I GGTNACC 1 cut(s) 532
EcoICRI GAGCTC 1 cut(s) 607
EcoO109I RGGNCCY 1 cut(s) 702
EcoO65I GGTNACC 1 cut(s) 532
EcoRII CCWGG 4 cut(s) 433, 663, 732, 784
EcoT22I ATGCAT 1 cut(s) 330
EcoT38I GRGCYC 2 cut(s) 609, 706
FaeI CATG 3 cut(s) 257, 328, 545
FaiI YATR 9 cut(s) 32, 255, 259, 326, 330, 543, 644, 648, 650
FatI CATG 3 cut(s) 253, 324, 541
FauI CCCGC 1 cut(s) 447
FokI GGATG 4 cut(s) 394, 690, 748, 828
FriOI GRGCYC 2 cut(s) 609, 706
FspBI CTAG 3 cut(s) 123, 554, 626
GlaI GCGC 2 cut(s) 11, 13
HaeIII GGCC 6 cut(s) 165, 438, 618, 704, 732, 789
HapII CCGG 6 cut(s) 146, 412, 417, 729, 766, 790
HhaI GCGC 2 cut(s) 12, 14
Hin1I GRCGYC 2 cut(s) 709, 810
Hin1II CATG 3 cut(s) 257, 328, 545
Hin6I GCGC 2 cut(s) 10, 12
HinP1I GCGC 2 cut(s) 10, 12
HinfI GANTC 2 cut(s) 305, 742
HpaII CCGG 6 cut(s) 146, 412, 417, 729, 766, 790
HphI GGTGA 1 cut(s) 526
Hpy188I TCNGA 5 cut(s) 284, 310, 578, 747, 815
Hpy188III TCNNGA 3 cut(s) 146, 175, 513
Hpy99I CGWCG 4 cut(s) 711, 720, 806, 815
HpyAV CCTTC 2 cut(s) 387, 571
HpyCH4III ACNGT 3 cut(s) 321, 452, 494
HpyCH4IV ACGT 6 cut(s) 156, 222, 709, 810, 841, 863
HpyCH4V TGCA 4 cut(s) 4, 96, 261, 328
HpyF3I CTNAG 1 cut(s) 697
HpySE526I ACGT 6 cut(s) 156, 222, 709, 810, 841, 863
Hsp92I GRCGYC 2 cut(s) 709, 810
Hsp92II CATG 3 cut(s) 257, 328, 545
HspAI GCGC 2 cut(s) 10, 12
Kpn2I TCCGGA 1 cut(s) 145
Kzo9I GATC 2 cut(s) 424, 654
LmnI GCTCC 2 cut(s) 447, 612
LweI GCATC 1 cut(s) 23
MaeI CTAG 3 cut(s) 123, 554, 626
MaeII ACGT 6 cut(s) 156, 222, 709, 810, 841, 863
MaeIII GTNAC 6 cut(s) 390, 403, 532, 680, 757, 818
MalI GATC 2 cut(s) 426, 656
MbiI CCGCTC 1 cut(s) 442
MboI GATC 2 cut(s) 424, 654
MboII GAAGA 1 cut(s) 242
MfeI CAATTG 2 cut(s) 106, 753
MhlI GDGCHC 2 cut(s) 609, 706
MlyI GAGTC 2 cut(s) 299, 736
MmeI TCCRAC 1 cut(s) 793
MnlI CCTC 4 cut(s) 155, 498, 723, 799
Mph1103I ATGCAT 1 cut(s) 330
MroI TCCGGA 1 cut(s) 145
MseI TTAA 5 cut(s) 192, 219, 230, 570, 857
MslI CAYNNNNRTG 1 cut(s) 399
MspI CCGG 6 cut(s) 146, 412, 417, 729, 766, 790
MspR9I CCNGG 7 cut(s) 412, 418, 435, 665, 734, 766, 786
MunI CAATTG 2 cut(s) 106, 753
MvaI CCWGG 4 cut(s) 435, 665, 734, 786
MvnI CGCG 2 cut(s) 12, 62
NciI CCSGG 3 cut(s) 412, 418, 766
NdeII GATC 2 cut(s) 424, 654
NlaIII CATG 3 cut(s) 257, 328, 545
NlaIV GGNNCC 3 cut(s) 591, 703, 704
NmuCI GTSAC 6 cut(s) 390, 403, 532, 680, 757, 818
NsiI ATGCAT 1 cut(s) 330
NspI RCATGY 1 cut(s) 328
NspV TTCGAA 2 cut(s) 56, 268
PasI CCCWGGG 1 cut(s) 664
PauI GCGCGC 1 cut(s) 10
PceI AGGCCT 1 cut(s) 618
PflMI CCANNNNNTGG 1 cut(s) 785
PfoI TCCNGGA 1 cut(s) 764
PleI GAGTC 2 cut(s) 299, 736
PpsI GAGTC 2 cut(s) 299, 736
PsiI TTATAA 1 cut(s) 32
Psp124BI GAGCTC 1 cut(s) 609
Psp6I CCWGG 4 cut(s) 433, 663, 732, 784
PspEI GGTNACC 1 cut(s) 532
PspGI CCWGG 4 cut(s) 433, 663, 732, 784
PspN4I GGNNCC 3 cut(s) 591, 703, 704
PspOMI GGGCCC 1 cut(s) 702
PspPI GGNCC 5 cut(s) 164, 414, 437, 702, 703
PteI GCGCGC 1 cut(s) 10
RsaI GTAC 3 cut(s) 212, 315, 323
RsaNI GTAC 3 cut(s) 211, 314, 322
RseI CAYNNNNRTG 1 cut(s) 399
Rsr2I CGGWCCG 1 cut(s) 414
RsrII CGGWCCG 1 cut(s) 414
SacI GAGCTC 1 cut(s) 609
SaqAI TTAA 5 cut(s) 192, 219, 230, 570, 857
Sau3AI GATC 2 cut(s) 424, 654
Sau96I GGNCC 5 cut(s) 164, 414, 437, 702, 703
SchI GAGTC 2 cut(s) 299, 736
ScrFI CCNGG 7 cut(s) 412, 418, 435, 665, 734, 766, 786
SduI GDGCHC 2 cut(s) 609, 706
SetI ASST 9 cut(s) 118, 159, 225, 609, 631, 712, 813, 844, 866
SfaNI GCATC 1 cut(s) 23
SfuI TTCGAA 2 cut(s) 56, 268
SinI GGWCC 1 cut(s) 414
SmiMI CAYNNNNRTG 1 cut(s) 399
SseBI AGGCCT 1 cut(s) 618
SsiI CCGC 4 cut(s) 62, 422, 440, 468
SspMI CTAG 3 cut(s) 123, 554, 626
SstI GAGCTC 1 cut(s) 609
StuI AGGCCT 1 cut(s) 618
StyD4I CCNGG 7 cut(s) 410, 416, 433, 663, 732, 764, 784
TaaI ACNGT 3 cut(s) 321, 452, 494
TaiI ACGT 6 cut(s) 159, 225, 712, 813, 844, 866
TaqI TCGA 4 cut(s) 56, 160, 174, 268
TatI WGTACW 3 cut(s) 210, 313, 321
Tru1I TTAA 5 cut(s) 192, 219, 230, 570, 857
Tru9I TTAA 5 cut(s) 192, 219, 230, 570, 857
TscAI CASTG 2 cut(s) 533, 607
TseFI GTSAC 6 cut(s) 390, 403, 532, 680, 757, 818
Tsp45I GTSAC 6 cut(s) 390, 403, 532, 680, 757, 818
TspDTI ATGAA 1 cut(s) 242
TspGWI ACGGA 2 cut(s) 370, 602
TspRI CASTG 2 cut(s) 533, 607
Van91I CCANNNNNTGG 1 cut(s) 785
VpaK11BI GGWCC 1 cut(s) 414
XapI RAATTY 4 cut(s) 66, 263, 278, 834
XceI RCATGY 1 cut(s) 328
XspI CTAG 3 cut(s) 123, 554, 626
ZraI GACGTC 2 cut(s) 710, 811
Zsp2I ATGCAT 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.