pycom10g23360

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
25544287 .. 25544783
497 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g23360.2

Sequence Viewer

Length: 237 bp
ATGAAGCATTTCATAAATCAAATGTTACATATCAGAAAATTCGATTTTTCCCAAAAATTTCCAAATTTCACAAGAATGAAGATCTCAACAAGTAGAGTAAACTTTATACCTGCGGCCAAGACCAATTTGGCCGTAAAACACCCCAAACTGGCCACGAACCGCCGGAACCCAAAGATGGGTGCTCTTCAATTCGACTTCCTCGGTATCCCAACGCCCCTACAACCTATTGGGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.98

Weight (kDa)

11.86

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 118
AciI CCGC 2 cut(s) 113, 160
AcoI YGGCCR 3 cut(s) 114, 129, 150
AcsI RAATTY 3 cut(s) 38, 56, 64
AfiI CCNNNNNNNGG 3 cut(s) 148, 175, 176
AgsI TTSAA 1 cut(s) 188
Alw21I GWGCWC 1 cut(s) 184
AoxI GGCC 3 cut(s) 114, 129, 150
ApoI RAATTY 3 cut(s) 38, 56, 64
Asp700I GAANNNNTTC 1 cut(s) 8
BalI TGGCCA 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 184
BccI CCATC 1 cut(s) 169
BceAI ACGGC 1 cut(s) 116
BciVI GTATCC 1 cut(s) 215
BfuAI ACCTGC 1 cut(s) 118
BfuI GTATCC 1 cut(s) 215
BglII AGATCT 1 cut(s) 81
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 199
Bsc4I CCNNNNNNNGG 3 cut(s) 148, 175, 176
Bse1I ACTGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 199
BseLI CCNNNNNNNGG 3 cut(s) 148, 175, 176
BseNI ACTGG 1 cut(s) 153
BshFI GGCC 3 cut(s) 116, 131, 152
BsiHKAI GWGCWC 1 cut(s) 184
BsiSI CCGG 1 cut(s) 163
BslI CCNNNNNNNGG 3 cut(s) 148, 175, 176
BsnI GGCC 3 cut(s) 116, 131, 152
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 1 cut(s) 81
BspACI CCGC 2 cut(s) 113, 160
BspANI GGCC 3 cut(s) 116, 131, 152
BspLI GGNNCC 1 cut(s) 167
BspMI ACCTGC 1 cut(s) 118
BspQI GCTCTTC 1 cut(s) 189
BsrI ACTGG 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 1 cut(s) 81
Bst6I CTCTTC 1 cut(s) 189
BstKTI GATC 1 cut(s) 84
BstMBI GATC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BsuI GTATCC 1 cut(s) 215
BsuRI GGCC 3 cut(s) 116, 131, 152
BveI ACCTGC 1 cut(s) 118
CviJI RGCY 3 cut(s) 116, 131, 152
CviKI_1 RGCY 3 cut(s) 116, 131, 152
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
EaeI YGGCCR 3 cut(s) 114, 129, 150
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
FaiI YATR 3 cut(s) 14, 30, 107
Fnu4HI GCNGC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 3 cut(s) 116, 131, 152
HapII CCGG 1 cut(s) 163
HpaII CCGG 1 cut(s) 163
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 1 cut(s) 35
Hpy188III TCNNGA 1 cut(s) 234
Hpy8I GTNNAC 1 cut(s) 100
Kzo9I GATC 1 cut(s) 81
LguI GCTCTTC 1 cut(s) 189
LpnPI CCDG 3 cut(s) 123, 134, 176
MaeIII GTNAC 1 cut(s) 24
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MboII GAAGA 2 cut(s) 91, 176
MflI RGATCY 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 184
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 5 cut(s) 38, 56, 64, 124, 188
MluNI TGGCCA 1 cut(s) 152
MnlI CCTC 1 cut(s) 209
Mox20I TGGCCA 1 cut(s) 152
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 152
MslI CAYNNNNRTG 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 152
MspI CCGG 1 cut(s) 163
NdeII GATC 1 cut(s) 81
NlaIV GGNNCC 1 cut(s) 167
PciSI GCTCTTC 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 167
PsuI RGATCY 1 cut(s) 81
RseI CAYNNNNRTG 1 cut(s) 74
SapI GCTCTTC 1 cut(s) 189
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 1 cut(s) 81
SduI GDGCHC 1 cut(s) 184
SetI ASST 2 cut(s) 112, 226
SgeI CNNG 8 cut(s) 84, 102, 122, 130, 161, 166, 175, 212
SmiMI CAYNNNNRTG 1 cut(s) 74
Sse9I AATT 5 cut(s) 38, 56, 64, 124, 188
SsiI CCGC 2 cut(s) 113, 160
TaqI TCGA 2 cut(s) 42, 192
TasI AATT 5 cut(s) 38, 56, 64, 124, 188
TauI GCSGC 1 cut(s) 116
TspDTI ATGAA 2 cut(s) 17, 92
XapI RAATTY 3 cut(s) 38, 56, 64
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.