pycom02g18230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000158
Physical Location & Seq
Forward (+)
16536328 .. 16537793
1466 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g18230.9

Sequence Viewer

Length: 948 bp
ATGATATCGTTTGTTCAACAAAAAAAAAAAATCAATCATTTGACAATTAATTTAATCACATTATTATGCGCGTATGTTTTGAATGTCACATTATTGCTAGCTTATTGTGTGACATCCCGGCCCGGGCCCTTACCACATCCGGGGCTCGACTCCACTGTAGTACAATATTGTCCACTTTTGGCCCCAACCATGCCCTCACGGTTTTGTTTCTGGGAACTCACACGAGAACTTCCCAATGAGTCACTCATCCTGGGAATGCTCTCGCCCAAACTCAGATGGAAATATAAATATAAGACTTACATTATCCACTCCCCTGGGCTATGTGGGATGTTACAATCCACCCCCTTAGGGGCCCGACGTCCTCGTCGGCACACCTCCGCCCAGGGATTGGCTATGATACCAAATTGTCACATCCCACCCTGGGCCCCCACCGCATCCTGGGCTTTACTCCACCGTAGCACGATATTGTCCGCCTTGGGCCCCGACCACGTCCTCACGATTTTGTTTCTAGGACCTCACACGAGAACTTCCCAATGGGTCACTCGTCTTGGGAATACTCTCGCCCGAACTCCTTCCAAAAGGCCTCGTGCTAGCTCTTGGGCAATGTGGGATGTTACATATTGTGAGGTACTAATTATATATATATATAACTGTACAAAAAATTTAATTATTAAAAAGACACTGTTAAAATGTCGAAAATACCCCTGCATTTTTGTCCACTTCTTTTTTTTTTTTGGTGAAACTTGTGACCCCAAAAGAGGTTGTTGGATACAATACTATATTTATTATAGAATAAATTTTACCAATTACGTCCCTAATATTAAAATTCAAAGCTACTATATTCAACTTTCTTGTAGATTGGTAATTTTTCATAAAGAATTAATGTATGAAGTTAAGGGCTTATATACGAGAAAATTACAGTATTGTACTATAAAGTATGTTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

316

Amino Acids

36.7

Weight (kDa)

9.76

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 363
AatII GACGTC 1 cut(s) 361
AccB7I CCANNNNNTGG 1 cut(s) 388
AccII CGCG 1 cut(s) 71
AciI CCGC 3 cut(s) 378, 432, 471
AcsI RAATTY 3 cut(s) 661, 796, 825
AcyI GRCGYC 1 cut(s) 358
AfaI GTAC 4 cut(s) 162, 630, 655, 928
AfiI CCNNNNNNNGG 8 cut(s) 123, 140, 348, 349, 388, 421, 438, 758
AgsI TTSAA 4 cut(s) 17, 82, 830, 845
AjiI CACGTC 1 cut(s) 490
AjnI CCWGG 5 cut(s) 249, 313, 381, 419, 437
AluBI AGCT 3 cut(s) 101, 594, 834
AluI AGCT 3 cut(s) 101, 594, 834
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 7 cut(s) 119, 125, 180, 351, 423, 478, 581
ApaI GGGCCC 4 cut(s) 129, 355, 427, 482
ApoI RAATTY 3 cut(s) 661, 796, 825
AseI ATTAAT 2 cut(s) 48, 881
Asp700I GAANNNNTTC 1 cut(s) 571
AspLEI GCGC 1 cut(s) 71
AsuC2I CCSGG 4 cut(s) 118, 123, 124, 141
AsuHPI GGTGA 1 cut(s) 749
AsuNHI GCTAGC 2 cut(s) 97, 590
AvaI CYCGRG 1 cut(s) 122
AvaII GGWCC 1 cut(s) 512
AxyI CCTNAGG 1 cut(s) 346
BaeGI GKGCMC 4 cut(s) 129, 355, 427, 482
BanII GRGCYC 5 cut(s) 129, 147, 355, 427, 482
BauI CACGAG 3 cut(s) 222, 520, 585
BccI CCATC 1 cut(s) 270
BciT130I CCWGG 5 cut(s) 251, 315, 383, 421, 439
BciVI GTATCC 1 cut(s) 762
BcnI CCSGG 4 cut(s) 118, 123, 124, 141
BfaI CTAG 3 cut(s) 98, 509, 591
BfmI CTRYAG 1 cut(s) 156
BfuI GTATCC 1 cut(s) 762
Bme1390I CCNGG 9 cut(s) 118, 123, 124, 141, 251, 315, 383, 421, 439
Bme18I GGWCC 1 cut(s) 512
BmeT110I CYCGRG 1 cut(s) 122
BmgBI CACGTC 1 cut(s) 490
BmiI GGNNCC 8 cut(s) 127, 183, 352, 353, 425, 426, 480, 481
BmrFI CCNGG 9 cut(s) 118, 123, 124, 141, 251, 315, 383, 421, 439
BmsI GCATC 1 cut(s) 443
BmtI GCTAGC 2 cut(s) 101, 594
BpuMI CCSGG 4 cut(s) 118, 123, 124, 141
BsaHI GRCGYC 1 cut(s) 358
Bsc4I CCNNNNNNNGG 8 cut(s) 123, 140, 348, 349, 388, 421, 438, 758
Bse21I CCTNAGG 1 cut(s) 346
Bse3DI GCAATG 1 cut(s) 609
BseBI CCWGG 5 cut(s) 251, 315, 383, 421, 439
BseGI GGATG 7 cut(s) 113, 136, 246, 333, 411, 434, 616
BseLI CCNNNNNNNGG 8 cut(s) 123, 140, 348, 349, 388, 421, 438, 758
BseMI GCAATG 1 cut(s) 609
BseMII CTCAG 1 cut(s) 286
BseSI GKGCMC 4 cut(s) 129, 355, 427, 482
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 7 cut(s) 121, 127, 182, 353, 425, 480, 583
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 3 cut(s) 118, 123, 140
BslFI GGGAC 1 cut(s) 797
BslI CCNNNNNNNGG 8 cut(s) 123, 140, 348, 349, 388, 421, 438, 758
BsmFI GGGAC 1 cut(s) 797
BsmI GAATGC 1 cut(s) 261
BsnI GGCC 7 cut(s) 121, 127, 182, 353, 425, 480, 583
BsoBI CYCGRG 1 cut(s) 122
Bsp120I GGGCCC 4 cut(s) 125, 351, 423, 478
Bsp1286I GDGCHC 5 cut(s) 129, 147, 355, 427, 482
Bsp1407I TGTACA 1 cut(s) 653
BspACI CCGC 3 cut(s) 378, 432, 471
BspANI GGCC 7 cut(s) 121, 127, 182, 353, 425, 480, 583
BspCNI CTCAG 1 cut(s) 285
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 8 cut(s) 127, 183, 352, 353, 425, 426, 480, 481
BspOI GCTAGC 2 cut(s) 101, 594
BsrDI GCAATG 1 cut(s) 609
BsrGI TGTACA 1 cut(s) 653
BssNI GRCGYC 1 cut(s) 358
BssSI CACGAG 3 cut(s) 222, 520, 585
BssT1I CCWWGG 1 cut(s) 474
Bst2BI CACGAG 3 cut(s) 222, 520, 585
Bst2UI CCWGG 5 cut(s) 251, 315, 383, 421, 439
Bst4CI ACNGT 6 cut(s) 157, 201, 455, 653, 684, 921
BstACI GRCGYC 1 cut(s) 358
BstAUI TGTACA 1 cut(s) 653
BstC8I GCNNGC 2 cut(s) 99, 592
BstDEI CTNAG 2 cut(s) 272, 346
BstF5I GGATG 7 cut(s) 113, 136, 246, 333, 411, 434, 616
BstFNI CGCG 1 cut(s) 71
BstHHI GCGC 1 cut(s) 71
BstMWI GCNNNNNNNGC 2 cut(s) 431, 440
BstNI CCWGG 5 cut(s) 251, 315, 383, 421, 439
BstSCI CCNGG 9 cut(s) 116, 121, 122, 139, 249, 313, 381, 419, 437
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 4 cut(s) 129, 355, 427, 482
BstUI CGCG 1 cut(s) 71
BstXI CCANNNNNNTGG 1 cut(s) 314
Bsu36I CCTNAGG 1 cut(s) 346
BsuI GTATCC 1 cut(s) 762
BsuRI GGCC 7 cut(s) 121, 127, 182, 353, 425, 480, 583
BtrI CACGTC 1 cut(s) 490
BtsCI GGATG 7 cut(s) 113, 136, 246, 333, 411, 434, 616
BtsIMutI CAGTG 2 cut(s) 153, 680
Cac8I GCNNGC 2 cut(s) 99, 592
CfoI GCGC 1 cut(s) 71
Cfr9I CCCGGG 1 cut(s) 122
Csp6I GTAC 4 cut(s) 161, 629, 654, 927
CviAII CATG 1 cut(s) 190
CviQI GTAC 4 cut(s) 161, 629, 654, 927
DdeI CTNAG 2 cut(s) 272, 346
DrdI GACNNNNNNGTC 1 cut(s) 363
DseDI GACNNNNNNGTC 1 cut(s) 363
EciI GGCGGA 2 cut(s) 367, 460
Eco130I CCWWGG 1 cut(s) 474
Eco147I AGGCCT 1 cut(s) 583
Eco24I GRGCYC 5 cut(s) 129, 147, 355, 427, 482
Eco32I GATATC 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 512
Eco81I CCTNAGG 1 cut(s) 346
Eco88I CYCGRG 1 cut(s) 122
EcoO109I RGGNCCY 5 cut(s) 126, 351, 424, 479, 512
EcoRII CCWGG 5 cut(s) 249, 313, 381, 419, 437
EcoRV GATATC 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 474
EcoT38I GRGCYC 5 cut(s) 129, 147, 355, 427, 482
ErhI CCWWGG 1 cut(s) 474
FaeI CATG 1 cut(s) 193
FaqI GGGAC 1 cut(s) 797
FatI CATG 1 cut(s) 189
FokI GGATG 7 cut(s) 100, 123, 233, 340, 398, 421, 623
FriOI GRGCYC 5 cut(s) 129, 147, 355, 427, 482
FspBI CTAG 3 cut(s) 98, 509, 591
GlaI GCGC 1 cut(s) 70
HaeIII GGCC 7 cut(s) 121, 127, 182, 353, 425, 480, 583
HapII CCGG 3 cut(s) 118, 123, 140
HhaI GCGC 1 cut(s) 71
Hin1I GRCGYC 1 cut(s) 358
Hin1II CATG 1 cut(s) 193
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HinfI GANTC 2 cut(s) 149, 239
HpaII CCGG 3 cut(s) 118, 123, 140
HphI GGTGA 1 cut(s) 749
Hpy166II GTNNAC 2 cut(s) 173, 718
Hpy188I TCNGA 1 cut(s) 275
Hpy188III TCNNGA 1 cut(s) 496
Hpy8I GTNNAC 2 cut(s) 173, 718
Hpy99I CGWCG 2 cut(s) 360, 369
HpyAV CCTTC 1 cut(s) 582
HpyCH4III ACNGT 6 cut(s) 157, 201, 455, 653, 684, 921
HpyCH4IV ACGT 3 cut(s) 358, 489, 810
HpyCH4V TGCA 1 cut(s) 708
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 440
HpyF3I CTNAG 2 cut(s) 272, 346
HpySE526I ACGT 3 cut(s) 358, 489, 810
Hsp92I GRCGYC 1 cut(s) 358
Hsp92II CATG 1 cut(s) 193
HspAI GCGC 1 cut(s) 69
LweI GCATC 1 cut(s) 443
MaeI CTAG 3 cut(s) 98, 509, 591
MaeII ACGT 3 cut(s) 358, 489, 810
MaeIII GTNAC 8 cut(s) 85, 109, 240, 330, 407, 538, 613, 746
MhlI GDGCHC 5 cut(s) 129, 147, 355, 427, 482
MlyI GAGTC 2 cut(s) 143, 248
MmeI TCCRAC 1 cut(s) 746
MnlI CCTC 8 cut(s) 205, 372, 385, 503, 525, 594, 619, 752
MroXI GAANNNNTTC 1 cut(s) 571
MseI TTAA 9 cut(s) 48, 53, 665, 672, 686, 822, 881, 894, 942
MslI CAYNNNNRTG 1 cut(s) 64
MspI CCGG 3 cut(s) 118, 123, 140
MspR9I CCNGG 9 cut(s) 118, 123, 124, 141, 251, 315, 383, 421, 439
Mva1269I GAATGC 1 cut(s) 261
MvaI CCWGG 5 cut(s) 251, 315, 383, 421, 439
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 431, 440
NciI CCSGG 4 cut(s) 118, 123, 124, 141
NheI GCTAGC 2 cut(s) 97, 590
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 8 cut(s) 127, 183, 352, 353, 425, 426, 480, 481
NmuCI GTSAC 6 cut(s) 85, 109, 240, 407, 538, 746
PasI CCCWGGG 3 cut(s) 314, 382, 420
PceI AGGCCT 1 cut(s) 583
PctI GAATGC 1 cut(s) 261
PdmI GAANNNNTTC 1 cut(s) 571
PflFI GACNNNGTC 1 cut(s) 488
PflMI CCANNNNNTGG 1 cut(s) 388
PleI GAGTC 2 cut(s) 143, 247
PpsI GAGTC 2 cut(s) 143, 247
PpuMI RGGWCCY 1 cut(s) 512
PshBI ATTAAT 2 cut(s) 48, 881
Psp5II RGGWCCY 1 cut(s) 512
Psp6I CCWGG 5 cut(s) 249, 313, 381, 419, 437
PspGI CCWGG 5 cut(s) 249, 313, 381, 419, 437
PspN4I GGNNCC 8 cut(s) 127, 183, 352, 353, 425, 426, 480, 481
PspOMI GGGCCC 4 cut(s) 125, 351, 423, 478
PspPPI RGGWCCY 1 cut(s) 512
PsyI GACNNNGTC 1 cut(s) 488
RsaI GTAC 4 cut(s) 162, 630, 655, 928
RsaNI GTAC 4 cut(s) 161, 629, 654, 927
RseI CAYNNNNRTG 1 cut(s) 64
SaqAI TTAA 9 cut(s) 48, 53, 665, 672, 686, 822, 881, 894, 942
SchI GAGTC 2 cut(s) 143, 248
ScrFI CCNGG 9 cut(s) 118, 123, 124, 141, 251, 315, 383, 421, 439
SduI GDGCHC 5 cut(s) 129, 147, 355, 427, 482
SfaNI GCATC 1 cut(s) 443
SfcI CTRYAG 1 cut(s) 156
SinI GGWCC 1 cut(s) 512
SmaI CCCGGG 1 cut(s) 124
SmiMI CAYNNNNRTG 1 cut(s) 64
SrfI GCCCGGGC 1 cut(s) 124
SseBI AGGCCT 1 cut(s) 583
SsiI CCGC 3 cut(s) 378, 432, 471
SspI AATATT 2 cut(s) 167, 820
SspMI CTAG 3 cut(s) 98, 509, 591
StuI AGGCCT 1 cut(s) 583
StyD4I CCNGG 9 cut(s) 116, 121, 122, 139, 249, 313, 381, 419, 437
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 6 cut(s) 157, 201, 455, 653, 684, 921
TaiI ACGT 3 cut(s) 361, 492, 813
TaqI TCGA 2 cut(s) 147, 694
TatI WGTACW 3 cut(s) 160, 653, 926
Tru1I TTAA 9 cut(s) 48, 53, 665, 672, 686, 822, 881, 894, 942
Tru9I TTAA 9 cut(s) 48, 53, 665, 672, 686, 822, 881, 894, 942
TscAI CASTG 2 cut(s) 160, 687
TseFI GTSAC 6 cut(s) 85, 109, 240, 407, 538, 746
Tsp45I GTSAC 6 cut(s) 85, 109, 240, 407, 538, 746
TspDTI ATGAA 2 cut(s) 860, 903
TspMI CCCGGG 1 cut(s) 122
TspRI CASTG 2 cut(s) 160, 687
Tth111I GACNNNGTC 1 cut(s) 488
Van91I CCANNNNNTGG 1 cut(s) 388
VpaK11BI GGWCC 1 cut(s) 512
VspI ATTAAT 2 cut(s) 48, 881
XapI RAATTY 3 cut(s) 661, 796, 825
XmaI CCCGGG 1 cut(s) 122
XmnI GAANNNNTTC 1 cut(s) 571
XspI CTAG 3 cut(s) 98, 509, 591
ZraI GACGTC 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.