pycom17g16430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000158
Physical Location & Seq
Forward (+)
14558092 .. 14559159
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g16430.1

Sequence Viewer

Length: 804 bp
ATGCATAGCACGATATTGTCCACTTTGGGCCCCAGCCACACCCTCACGGATTACTCTTGCCTGAACTCACTTAACTTCGGAGTTTCGATGAAATCCAAAGCTAGTGAGTTCCTAAAAGACCTCGTGCTATATGGAGGTGGGCATGTCCATATAAGGCACATCACCCCCTCTCCGTTGGTCGATGTGGGATGTTACAATCCACCCTCCTTAGGGGCCCGAAGTCCTCATGGGCACACTCACACCACATGGCAGAGGGGCTCTGATACCATTCTGGTATATTGTAACATCCCATATCAATCAACGGAGAGGGGGAGGCCTTTTGGGAACTCACTGGCTTCGTGTGATAGCCCGTCCCTAAAAATCCTAGGGGCAAAGCATGATTTTCGAAGACATAGAGCTCGACCTTACGGACGCATAGGCATAGTTACGAACCCGAAAGTATTTGGAATGAAATACTATTTTAATTATTTTACACTATATTTTATTATTATTACTAAAGGTTTTTTTTTTTTTATGATATATGGGTGTGTGTGTGTGCAAAGGAGTGGAGAAAATGGAAGAAAAGGGGGAGACCAATCGGGGAAAGAGGGAAGAGAAATGAGGACCAATGGGAGGGAGAGCAGGAGGGAAAGGAGAGAAGAAGAAAATGAGGGAACCCAAATGGGTCTTCCTCGACCCGTGCAACCTATTTCCTTAAACCGACGGCTCATCGCCGTTTCTCATCCAAATTTTCGACAAATTGGACCTATAAACTGCTCCCAGTCATCACCTTGGCCCTTTCTCTACTTGTTCCACCAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

268

Amino Acids

30.25

Weight (kDa)

9.79

Isoelectric Point (pI)

51.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 727
AfiI CCNNNNNNNGG 3 cut(s) 209, 210, 612
AjuI GAANNNNNNNTTGG 2 cut(s) 651, 683
AluBI AGCT 2 cut(s) 101, 398
AluI AGCT 2 cut(s) 101, 398
Alw21I GWGCWC 1 cut(s) 400
Alw26I GTCTC 1 cut(s) 564
AoxI GGCC 4 cut(s) 28, 213, 314, 773
ApaI GGGCCC 2 cut(s) 32, 217
ApoI RAATTY 1 cut(s) 727
AspA2I CCTAGG 1 cut(s) 364
AspS9I GGNCC 7 cut(s) 28, 29, 213, 214, 603, 743, 774
AsuHPI GGTGA 2 cut(s) 154, 759
AsuII TTCGAA 1 cut(s) 385
AvaII GGWCC 2 cut(s) 603, 743
AvrII CCTAGG 1 cut(s) 364
AxyI CCTNAGG 1 cut(s) 208
BaeGI GKGCMC 3 cut(s) 32, 217, 234
BanII GRGCYC 4 cut(s) 32, 217, 260, 400
BauI CACGAG 1 cut(s) 122
BbsI GAAGAC 2 cut(s) 394, 659
Bbv12I GWGCWC 1 cut(s) 400
BceAI ACGGC 2 cut(s) 698, 719
BcgI CGANNNNNNTGC 2 cut(s) 365, 399
BcoDI GTCTC 1 cut(s) 564
BfaI CTAG 2 cut(s) 102, 365
BlnI CCTAGG 1 cut(s) 364
Bme18I GGWCC 2 cut(s) 603, 743
BmgT120I GGNCC 7 cut(s) 28, 29, 213, 214, 603, 743, 774
BmiI GGNNCC 5 cut(s) 30, 31, 214, 215, 655
BmrI ACTGGG 1 cut(s) 754
BmuI ACTGGG 1 cut(s) 754
BpiI GAAGAC 2 cut(s) 394, 659
Bpu14I TTCGAA 1 cut(s) 385
BsaI GGTCTC 1 cut(s) 564
BsaJI CCNNGG 2 cut(s) 364, 770
BsaXI ACNNNNNCTCC 2 cut(s) 154, 184
Bsc4I CCNNNNNNNGG 3 cut(s) 209, 210, 612
Bse1I ACTGG 2 cut(s) 336, 760
Bse21I CCTNAGG 1 cut(s) 208
BseDI CCNNGG 2 cut(s) 364, 770
BseGI GGATG 3 cut(s) 194, 285, 721
BseLI CCNNNNNNNGG 3 cut(s) 209, 210, 612
BseNI ACTGG 2 cut(s) 336, 760
BseSI GKGCMC 3 cut(s) 32, 217, 234
BseYI CCCAGC 1 cut(s) 32
BshFI GGCC 4 cut(s) 30, 215, 316, 775
BsiHKAI GWGCWC 1 cut(s) 400
BslFI GGGAC 1 cut(s) 337
BslI CCNNNNNNNGG 3 cut(s) 209, 210, 612
BsmAI GTCTC 1 cut(s) 564
BsmFI GGGAC 1 cut(s) 337
BsnI GGCC 4 cut(s) 30, 215, 316, 775
Bso31I GGTCTC 1 cut(s) 564
Bsp119I TTCGAA 1 cut(s) 385
Bsp120I GGGCCC 2 cut(s) 28, 213
Bsp1286I GDGCHC 5 cut(s) 32, 217, 234, 260, 400
BspANI GGCC 4 cut(s) 30, 215, 316, 775
BspLI GGNNCC 5 cut(s) 30, 31, 214, 215, 655
BspT104I TTCGAA 1 cut(s) 385
BspTNI GGTCTC 1 cut(s) 564
BsrI ACTGG 2 cut(s) 336, 760
BssECI CCNNGG 2 cut(s) 364, 770
BssSI CACGAG 1 cut(s) 122
BssT1I CCWWGG 2 cut(s) 364, 770
Bst2BI CACGAG 1 cut(s) 122
Bst6I CTCTTC 1 cut(s) 586
BstBI TTCGAA 1 cut(s) 385
BstDEI CTNAG 1 cut(s) 208
BstF5I GGATG 3 cut(s) 194, 285, 721
BstMAI GTCTC 1 cut(s) 564
BstNSI RCATGY 1 cut(s) 146
BstSLI GKGCMC 3 cut(s) 32, 217, 234
BstV2I GAAGAC 2 cut(s) 394, 659
Bsu36I CCTNAGG 1 cut(s) 208
BsuRI GGCC 4 cut(s) 30, 215, 316, 775
BtgZI GCGATG 1 cut(s) 694
BtsCI GGATG 3 cut(s) 194, 285, 721
BtsIMutI CAGTG 1 cut(s) 329
Cfr13I GGNCC 7 cut(s) 28, 29, 213, 214, 603, 743, 774
CseI GACGC 1 cut(s) 420
CviAII CATG 4 cut(s) 143, 227, 246, 377
DdeI CTNAG 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 586
EarI CTCTTC 1 cut(s) 586
Ecl136II GAGCTC 1 cut(s) 398
Eco130I CCWWGG 2 cut(s) 364, 770
Eco147I AGGCCT 1 cut(s) 316
Eco24I GRGCYC 4 cut(s) 32, 217, 260, 400
Eco31I GGTCTC 1 cut(s) 564
Eco47I GGWCC 2 cut(s) 603, 743
Eco53kI GAGCTC 1 cut(s) 398
Eco81I CCTNAGG 1 cut(s) 208
EcoICRI GAGCTC 1 cut(s) 398
EcoO109I RGGNCCY 2 cut(s) 29, 213
EcoT14I CCWWGG 2 cut(s) 364, 770
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 4 cut(s) 32, 217, 260, 400
ErhI CCWWGG 2 cut(s) 364, 770
FaeI CATG 4 cut(s) 146, 230, 249, 380
FaqI GGGAC 1 cut(s) 337
FatI CATG 4 cut(s) 142, 226, 245, 376
FokI GGATG 3 cut(s) 201, 272, 708
FriOI GRGCYC 4 cut(s) 32, 217, 260, 400
FspBI CTAG 2 cut(s) 102, 365
GsaI CCCAGC 1 cut(s) 36
HaeIII GGCC 4 cut(s) 30, 215, 316, 775
HgaI GACGC 1 cut(s) 420
Hin1II CATG 4 cut(s) 146, 230, 249, 380
HphI GGTGA 2 cut(s) 154, 759
Hpy166II GTNNAC 1 cut(s) 21
Hpy188I TCNGA 2 cut(s) 80, 262
Hpy8I GTNNAC 1 cut(s) 21
Hpy99I CGWCG 1 cut(s) 705
HpyCH4V TGCA 3 cut(s) 4, 538, 682
HpyF3I CTNAG 1 cut(s) 208
Hsp92II CATG 4 cut(s) 146, 230, 249, 380
LmnI GCTCC 1 cut(s) 761
LpnPI CCDG 6 cut(s) 46, 74, 257, 317, 607, 773
MaeI CTAG 2 cut(s) 102, 365
MaeIII GTNAC 3 cut(s) 191, 281, 424
MboII GAAGA 6 cut(s) 399, 570, 603, 650, 653, 659
MhlI GDGCHC 5 cut(s) 32, 217, 234, 260, 400
MluCI AATT 3 cut(s) 463, 727, 738
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 72, 462, 695
NlaIII CATG 4 cut(s) 146, 230, 249, 380
NlaIV GGNNCC 5 cut(s) 30, 31, 214, 215, 655
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 146
NspV TTCGAA 1 cut(s) 385
PceI AGGCCT 1 cut(s) 316
Psp124BI GAGCTC 1 cut(s) 400
PspFI CCCAGC 1 cut(s) 32
PspN4I GGNNCC 5 cut(s) 30, 31, 214, 215, 655
PspOMI GGGCCC 2 cut(s) 28, 213
PspPI GGNCC 7 cut(s) 28, 29, 213, 214, 603, 743, 774
SacI GAGCTC 1 cut(s) 400
SaqAI TTAA 3 cut(s) 72, 462, 695
Sau96I GGNCC 7 cut(s) 28, 29, 213, 214, 603, 743, 774
SduI GDGCHC 5 cut(s) 32, 217, 234, 260, 400
SetI ASST 9 cut(s) 103, 123, 139, 400, 406, 502, 688, 748, 772
SfuI TTCGAA 1 cut(s) 385
SinI GGWCC 2 cut(s) 603, 743
Sse9I AATT 3 cut(s) 463, 727, 738
SseBI AGGCCT 1 cut(s) 316
SspMI CTAG 2 cut(s) 102, 365
SstI GAGCTC 1 cut(s) 400
StuI AGGCCT 1 cut(s) 316
StyI CCWWGG 2 cut(s) 364, 770
TaqI TCGA 6 cut(s) 86, 180, 385, 400, 673, 733
TasI AATT 3 cut(s) 463, 727, 738
Tru1I TTAA 3 cut(s) 72, 462, 695
Tru9I TTAA 3 cut(s) 72, 462, 695
TscAI CASTG 1 cut(s) 336
TspDTI ATGAA 2 cut(s) 104, 464
TspGWI ACGGA 4 cut(s) 62, 162, 317, 423
TspRI CASTG 1 cut(s) 336
VpaK11BI GGWCC 2 cut(s) 603, 743
XapI RAATTY 1 cut(s) 727
XceI RCATGY 1 cut(s) 146
XmaJI CCTAGG 1 cut(s) 364
XspI CTAG 2 cut(s) 102, 365
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.