pycom13g27830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000158
Physical Location & Seq
Forward (+)
23931639 .. 23933067
1429 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g27830.11

Sequence Viewer

Length: 939 bp
ATGGACAAGGTGAAGATTAATCCAATAGTAGAGTCTTTTCTATTTATCATTATTGAAACACTTACTTTTATTCTTTTTATTTTTTATTTTTTAATTTTTGTTTTAAATAAAGCTTTGCATAGTAACCAGACTAAGTTTTGGCATGGGGTAGGGTGGTTAGTTGGTTTCATAGCCTTTTTAGCTCGAGTTAGTAATAGTTTGGGAGTCATTGACTTAAAGCTTCCTACATTGGATCGAAAGCTTAAGTGCACTGACATTACACGACCGCTACTGTTACTGAAAAAAAAAATGAAAAAAGAAGAAAAAAAAAAAAAAAGAGAAAGAGAAAAATCGAAAAAAAATAATAGTTATCACGAGGCCTTTTGGGAGCTCACTGGCTTCGGAGTTCATCGGAACTTCGAAGTTAAGCGAGTAGCGCGCGAGAGCAATCCCATGATGGGTGACCCACTGGGAAGTTCCCAAAGCGGACAATATCGTGCTACAGTGGTGGAGCAGGCCCGGGAACTGATCCGCCCTGGGCGGGGATGTGACAAATTGGTATCAGAGCCAATCCCTGGCCGGAAGTGTGCCGACGAGGACGTCGGGGGAGTGATCCTTAAATGTATATTCCCATCTCTACCTAGCACGAGGCCTTTTGGGAGCTCACTGGCTTCGGGTTCCCCCATGATGGGTGACCCACTAGGAAGTTCCCAAAACGGACAATATCGTGCTACGGTGGTGGAGCGAGCCCGGGAAGTGATCCGCCCTGGGCCGGGATGTGACAAATTGGTATTAGAGCCAATCCCTGGCCGGAAATTTTCCGACGAGGACGTCGGGGGAGTGATCCTTAAATGTATATTCCAATCCCTACCTAGCATGAGGCCTTTTAGGAGCTCACTGGCTTCGGGTTCCGTAGGAACTCCAAAGTTAAGCGAGAAGGAGGCTAGAGCAATCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

34.81

Weight (kDa)

9.76

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 578, 809
AatII GACGTC 2 cut(s) 582, 813
AccB7I CCANNNNNTGG 2 cut(s) 554, 785
AccII CGCG 2 cut(s) 418, 420
AciI CCGC 5 cut(s) 266, 465, 511, 520, 742
AclWI GGATC 5 cut(s) 240, 502, 586, 733, 817
AcoI YGGCCR 2 cut(s) 556, 787
AcsI RAATTY 1 cut(s) 794
AcyI GRCGYC 2 cut(s) 579, 810
AfiI CCNNNNNNNGG 9 cut(s) 437, 520, 521, 554, 667, 668, 751, 752, 785
AflII CTTAAG 1 cut(s) 242
AgsI TTSAA 1 cut(s) 56
AjnI CCWGG 4 cut(s) 514, 553, 745, 784
AluBI AGCT 7 cut(s) 113, 182, 220, 241, 370, 642, 873
AluI AGCT 7 cut(s) 113, 182, 220, 241, 370, 642, 873
Alw21I GWGCWC 4 cut(s) 251, 372, 644, 875
Alw44I GTGCAC 1 cut(s) 247
AlwI GGATC 5 cut(s) 240, 502, 586, 733, 817
Ama87I CYCGRG 3 cut(s) 183, 498, 729
AoxI GGCC 7 cut(s) 357, 495, 556, 629, 749, 787, 860
ApaLI GTGCAC 1 cut(s) 247
ApoI RAATTY 1 cut(s) 794
AseI ATTAAT 1 cut(s) 18
AspLEI GCGC 2 cut(s) 418, 420
AspS9I GGNCC 2 cut(s) 496, 749
AsuC2I CCSGG 5 cut(s) 499, 500, 730, 731, 753
AsuHPI GGTGA 3 cut(s) 22, 452, 683
AsuII TTCGAA 1 cut(s) 399
AvaI CYCGRG 3 cut(s) 183, 498, 729
BaeGI GKGCMC 1 cut(s) 251
BanII GRGCYC 4 cut(s) 372, 644, 730, 875
BauI CACGAG 2 cut(s) 353, 625
Bbv12I GWGCWC 4 cut(s) 251, 372, 644, 875
BccI CCATC 3 cut(s) 430, 619, 661
BciT130I CCWGG 4 cut(s) 516, 555, 747, 786
BcnI CCSGG 5 cut(s) 499, 500, 730, 731, 753
BfaI CTAG 4 cut(s) 621, 680, 852, 924
BfmI CTRYAG 1 cut(s) 480
BfrI CTTAAG 1 cut(s) 242
Bme1390I CCNGG 9 cut(s) 499, 500, 516, 555, 730, 731, 747, 753, 786
BmeT110I CYCGRG 3 cut(s) 183, 498, 729
BmgT120I GGNCC 2 cut(s) 496, 749
BmiI GGNNCC 2 cut(s) 658, 889
BmrFI CCNGG 9 cut(s) 499, 500, 516, 555, 730, 731, 747, 753, 786
BmrI ACTGGG 1 cut(s) 458
BmuI ACTGGG 1 cut(s) 458
Bpu14I TTCGAA 1 cut(s) 399
BpuMI CCSGG 5 cut(s) 499, 500, 730, 731, 753
BsaHI GRCGYC 2 cut(s) 579, 810
BsaJI CCNNGG 8 cut(s) 498, 514, 515, 553, 729, 745, 746, 784
Bsc4I CCNNNNNNNGG 9 cut(s) 437, 520, 521, 554, 667, 668, 751, 752, 785
Bse1I ACTGG 4 cut(s) 379, 453, 651, 882
BseBI CCWGG 4 cut(s) 516, 555, 747, 786
BseDI CCNNGG 8 cut(s) 498, 514, 515, 553, 729, 745, 746, 784
BseGI GGATG 2 cut(s) 530, 761
BseLI CCNNNNNNNGG 9 cut(s) 437, 520, 521, 554, 667, 668, 751, 752, 785
BseNI ACTGG 4 cut(s) 379, 453, 651, 882
BsePI GCGCGC 1 cut(s) 416
BseSI GKGCMC 1 cut(s) 251
Bsh1236I CGCG 2 cut(s) 418, 420
Bsh1285I CGRYCG 1 cut(s) 266
BshFI GGCC 7 cut(s) 359, 497, 558, 631, 751, 789, 862
BsiEI CGRYCG 1 cut(s) 266
BsiHKAI GWGCWC 4 cut(s) 251, 372, 644, 875
BsiHKCI CYCGRG 3 cut(s) 183, 498, 729
BsiSI CCGG 5 cut(s) 499, 559, 730, 752, 790
BslI CCNNNNNNNGG 9 cut(s) 437, 520, 521, 554, 667, 668, 751, 752, 785
BsnI GGCC 7 cut(s) 359, 497, 558, 631, 751, 789, 862
BsoBI CYCGRG 3 cut(s) 183, 498, 729
Bsp119I TTCGAA 1 cut(s) 399
Bsp1286I GDGCHC 5 cut(s) 251, 372, 644, 730, 875
Bsp143I GATC 5 cut(s) 232, 507, 591, 738, 822
BspACI CCGC 5 cut(s) 266, 465, 511, 520, 742
BspANI GGCC 7 cut(s) 359, 497, 558, 631, 751, 789, 862
BspFNI CGCG 2 cut(s) 418, 420
BspLI GGNNCC 2 cut(s) 658, 889
BspPI GGATC 5 cut(s) 240, 502, 586, 733, 817
BspT104I TTCGAA 1 cut(s) 399
BspTI CTTAAG 1 cut(s) 242
BsrI ACTGG 4 cut(s) 379, 453, 651, 882
BssECI CCNNGG 8 cut(s) 498, 514, 515, 553, 729, 745, 746, 784
BssHII GCGCGC 1 cut(s) 416
BssMI GATC 5 cut(s) 232, 507, 591, 738, 822
BssNI GRCGYC 2 cut(s) 579, 810
BssSI CACGAG 2 cut(s) 353, 625
Bst2BI CACGAG 2 cut(s) 353, 625
Bst2UI CCWGG 4 cut(s) 516, 555, 747, 786
Bst4CI ACNGT 3 cut(s) 273, 484, 715
BstACI GRCGYC 2 cut(s) 579, 810
BstAFI CTTAAG 1 cut(s) 242
BstBI TTCGAA 1 cut(s) 399
BstC8I GCNNGC 3 cut(s) 418, 495, 726
BstDEI CTNAG 1 cut(s) 132
BstEII GGTNACC 2 cut(s) 440, 671
BstF5I GGATG 2 cut(s) 530, 761
BstFNI CGCG 2 cut(s) 418, 420
BstHHI GCGC 2 cut(s) 418, 420
BstKTI GATC 5 cut(s) 235, 510, 594, 741, 825
BstMBI GATC 5 cut(s) 232, 507, 591, 738, 822
BstMCI CGRYCG 1 cut(s) 266
BstMWI GCNNNNNNNGC 2 cut(s) 179, 415
BstNI CCWGG 4 cut(s) 516, 555, 747, 786
BstPI GGTNACC 2 cut(s) 440, 671
BstSCI CCNGG 9 cut(s) 497, 498, 514, 553, 728, 729, 745, 751, 784
BstSFI CTRYAG 1 cut(s) 480
BstSLI GKGCMC 1 cut(s) 251
BstUI CGCG 2 cut(s) 418, 420
BsuRI GGCC 7 cut(s) 359, 497, 558, 631, 751, 789, 862
BtsCI GGATG 2 cut(s) 530, 761
BtsIMutI CAGTG 6 cut(s) 249, 372, 446, 489, 644, 875
Cac8I GCNNGC 3 cut(s) 418, 495, 726
CfoI GCGC 2 cut(s) 418, 420
Cfr13I GGNCC 2 cut(s) 496, 749
Cfr9I CCCGGG 2 cut(s) 498, 729
CviAII CATG 5 cut(s) 143, 433, 664, 856, 936
DdeI CTNAG 1 cut(s) 132
DpnI GATC 5 cut(s) 234, 509, 593, 740, 824
DpnII GATC 5 cut(s) 232, 507, 591, 738, 822
DraI TTTAAA 1 cut(s) 105
DrdI GACNNNNNNGTC 2 cut(s) 578, 809
DseDI GACNNNNNNGTC 2 cut(s) 578, 809
EaeI YGGCCR 2 cut(s) 556, 787
EciI GGCGGA 2 cut(s) 500, 731
Ecl136II GAGCTC 3 cut(s) 370, 642, 873
Eco147I AGGCCT 3 cut(s) 359, 631, 862
Eco24I GRGCYC 4 cut(s) 372, 644, 730, 875
Eco53kI GAGCTC 3 cut(s) 370, 642, 873
Eco88I CYCGRG 3 cut(s) 183, 498, 729
Eco91I GGTNACC 2 cut(s) 440, 671
EcoICRI GAGCTC 3 cut(s) 370, 642, 873
EcoO65I GGTNACC 2 cut(s) 440, 671
EcoRII CCWGG 4 cut(s) 514, 553, 745, 784
EcoT38I GRGCYC 4 cut(s) 372, 644, 730, 875
FaeI CATG 5 cut(s) 146, 436, 667, 859, 939
FaiI YATR 9 cut(s) 120, 144, 170, 434, 605, 665, 836, 857, 937
FatI CATG 5 cut(s) 142, 432, 663, 855, 935
FauI CCCGC 1 cut(s) 513
FokI GGATG 2 cut(s) 537, 768
FriOI GRGCYC 4 cut(s) 372, 644, 730, 875
FspBI CTAG 4 cut(s) 621, 680, 852, 924
GlaI GCGC 2 cut(s) 417, 419
HaeIII GGCC 7 cut(s) 359, 497, 558, 631, 751, 789, 862
HapII CCGG 5 cut(s) 499, 559, 730, 752, 790
HhaI GCGC 2 cut(s) 418, 420
Hin1I GRCGYC 2 cut(s) 579, 810
Hin1II CATG 5 cut(s) 146, 436, 667, 859, 939
Hin6I GCGC 2 cut(s) 416, 418
HinP1I GCGC 2 cut(s) 416, 418
HindIII AAGCTT 3 cut(s) 111, 218, 239
HinfI GANTC 2 cut(s) 32, 204
HpaII CCGG 5 cut(s) 499, 559, 730, 752, 790
HphI GGTGA 3 cut(s) 22, 452, 683
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 4 cut(s) 383, 393, 544, 802
Hpy188III TCNNGA 1 cut(s) 353
Hpy8I GTNNAC 1 cut(s) 249
Hpy99I CGWCG 4 cut(s) 575, 584, 806, 815
HpyAV CCTTC 1 cut(s) 910
HpyCH4III ACNGT 3 cut(s) 273, 484, 715
HpyCH4IV ACGT 2 cut(s) 579, 810
HpyCH4V TGCA 2 cut(s) 118, 249
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 415
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 2 cut(s) 579, 810
Hsp92I GRCGYC 2 cut(s) 579, 810
Hsp92II CATG 5 cut(s) 146, 436, 667, 859, 939
HspAI GCGC 2 cut(s) 416, 418
Kzo9I GATC 5 cut(s) 232, 507, 591, 738, 822
LmnI GCTCC 5 cut(s) 367, 490, 639, 721, 870
MaeI CTAG 4 cut(s) 621, 680, 852, 924
MaeII ACGT 2 cut(s) 579, 810
MaeIII GTNAC 6 cut(s) 122, 273, 440, 527, 671, 758
MalI GATC 5 cut(s) 234, 509, 593, 740, 824
MboI GATC 5 cut(s) 232, 507, 591, 738, 822
MboII GAAGA 2 cut(s) 25, 311
MhlI GDGCHC 5 cut(s) 251, 372, 644, 730, 875
MluCI AATT 4 cut(s) 93, 533, 764, 794
MlyI GAGTC 2 cut(s) 41, 213
MmeI TCCRAC 1 cut(s) 825
MnlI CCTC 6 cut(s) 349, 568, 621, 799, 852, 913
MseI TTAA 9 cut(s) 18, 92, 104, 215, 243, 405, 597, 828, 908
MspCI CTTAAG 1 cut(s) 242
MspI CCGG 5 cut(s) 499, 559, 730, 752, 790
MspR9I CCNGG 9 cut(s) 499, 500, 516, 555, 730, 731, 747, 753, 786
MvaI CCWGG 4 cut(s) 516, 555, 747, 786
MvnI CGCG 2 cut(s) 418, 420
MwoI GCNNNNNNNGC 2 cut(s) 179, 415
NciI CCSGG 5 cut(s) 499, 500, 730, 731, 753
NdeII GATC 5 cut(s) 232, 507, 591, 738, 822
NlaIII CATG 5 cut(s) 146, 436, 667, 859, 939
NlaIV GGNNCC 2 cut(s) 658, 889
NmuCI GTSAC 4 cut(s) 440, 527, 671, 758
NspV TTCGAA 1 cut(s) 399
PaeR7I CTCGAG 1 cut(s) 183
PasI CCCWGGG 2 cut(s) 515, 746
PauI GCGCGC 1 cut(s) 416
PceI AGGCCT 3 cut(s) 359, 631, 862
PflMI CCANNNNNTGG 2 cut(s) 554, 785
PleI GAGTC 2 cut(s) 40, 212
PpsI GAGTC 2 cut(s) 40, 212
PshBI ATTAAT 1 cut(s) 18
Psp124BI GAGCTC 3 cut(s) 372, 644, 875
Psp6I CCWGG 4 cut(s) 514, 553, 745, 784
PspEI GGTNACC 2 cut(s) 440, 671
PspGI CCWGG 4 cut(s) 514, 553, 745, 784
PspN4I GGNNCC 2 cut(s) 658, 889
PspPI GGNCC 2 cut(s) 496, 749
PspXI VCTCGAGB 1 cut(s) 183
PteI GCGCGC 1 cut(s) 416
SacI GAGCTC 3 cut(s) 372, 644, 875
SaqAI TTAA 9 cut(s) 18, 92, 104, 215, 243, 405, 597, 828, 908
Sau3AI GATC 5 cut(s) 232, 507, 591, 738, 822
Sau96I GGNCC 2 cut(s) 496, 749
SchI GAGTC 2 cut(s) 41, 213
ScrFI CCNGG 9 cut(s) 499, 500, 516, 555, 730, 731, 747, 753, 786
SduI GDGCHC 5 cut(s) 251, 372, 644, 730, 875
SfcI CTRYAG 1 cut(s) 480
Sfr274I CTCGAG 1 cut(s) 183
SfuI TTCGAA 1 cut(s) 399
SlaI CTCGAG 1 cut(s) 183
SmaI CCCGGG 2 cut(s) 500, 731
SmlI CTYRAG 2 cut(s) 183, 242
SmoI CTYRAG 2 cut(s) 183, 242
Sse9I AATT 4 cut(s) 93, 533, 764, 794
SseBI AGGCCT 3 cut(s) 359, 631, 862
SsiI CCGC 5 cut(s) 266, 465, 511, 520, 742
SspMI CTAG 4 cut(s) 621, 680, 852, 924
SstI GAGCTC 3 cut(s) 372, 644, 875
StuI AGGCCT 3 cut(s) 359, 631, 862
StyD4I CCNGG 9 cut(s) 497, 498, 514, 553, 728, 729, 745, 751, 784
TaaI ACNGT 3 cut(s) 273, 484, 715
TaiI ACGT 2 cut(s) 582, 813
TaqI TCGA 4 cut(s) 184, 235, 332, 399
TasI AATT 4 cut(s) 93, 533, 764, 794
Tru1I TTAA 9 cut(s) 18, 92, 104, 215, 243, 405, 597, 828, 908
Tru9I TTAA 9 cut(s) 18, 92, 104, 215, 243, 405, 597, 828, 908
TscAI CASTG 6 cut(s) 256, 379, 453, 489, 651, 882
TseFI GTSAC 4 cut(s) 440, 527, 671, 758
Tsp45I GTSAC 4 cut(s) 440, 527, 671, 758
TspDTI ATGAA 3 cut(s) 157, 305, 377
TspGWI ACGGA 2 cut(s) 711, 880
TspMI CCCGGG 2 cut(s) 498, 729
TspRI CASTG 6 cut(s) 256, 379, 453, 489, 651, 882
Van91I CCANNNNNTGG 2 cut(s) 554, 785
Vha464I CTTAAG 1 cut(s) 242
VneI GTGCAC 1 cut(s) 247
VspI ATTAAT 1 cut(s) 18
XapI RAATTY 1 cut(s) 794
XhoI CTCGAG 1 cut(s) 183
XmaI CCCGGG 2 cut(s) 498, 729
XspI CTAG 4 cut(s) 621, 680, 852, 924
ZraI GACGTC 2 cut(s) 580, 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.