pycom05g07910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000158
Physical Location & Seq
Forward (+)
10691832 .. 10692738
907 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g07910.1

Sequence Viewer

Length: 780 bp
ATGACTCACGATACGATGGTATTTGTAGTACCTAAGATCGTTAACGTGATTCATCTCTTCGGGGTGCTTGCATTCAATGTAGCCATGTCAGAGTCAGGAAAAGGCTACGTCTTCTGCTTTAGTTCCCTTAAGATGTTTTTGTACCTATCTTGGGTGCGAGAAGGCTCACCTCTCTTTATCTCATTCGGTTTGTTCTTAGAGGAGATCTTGTCGGGCGCAGATGAGGTCTTGATGGGAGTCGTGTTGACGGTAAAAGCTTCATTGGCAGGCTTTTTCCTAGTTTTGTCTACCTTTAGGTTTTCCCATAATTGGCGATACTTAGCTCCATGTCATAGGAAAGAGTTGACAGCTCCTCAAATATTCTCGGTTTTATGCCTTAGAGGATGTAATGTAACCCTTAGTGCATGCCATGAATGTCACATCCCGACCCTGGTGGGACTACTTCCCGGGTCCGACTCCACTACCGTAGCACGATATTGTCCGCTTTGGGCTTACCATTCCCTCACGGTTTTGTTTTTGGGAACTCACGAGCAACTTCCCAGTGGGTCACCCATCATGGGATTGCTCTATGAGCTCCCAAAAGGCCTCGTGCTAGGTAAGGATGGGAATATACACTTAAGGATCACTCCCCTGGGCGATGTGGGATGTCACAATCCCAGTGTAGTATCCCACATCGCCCGTGAGGGCGTGGTCTTTGGGCCTTATATATCCATTGCCAGCATGTACACTTTGAGGAGGCCTTTTGGAGCTGCGGCTTGCAAAAACAAAACCGTGCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

28.44

Weight (kDa)

8.73

Isoelectric Point (pI)

49.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 287
AciI CCGC 3 cut(s) 482, 752, 775
AclWI GGATC 1 cut(s) 629
AfaI GTAC 3 cut(s) 30, 143, 725
AfiI CCNNNNNNNGG 4 cut(s) 151, 309, 430, 557
AflII CTTAAG 2 cut(s) 128, 616
AgsI TTSAA 1 cut(s) 76
AjnI CCWGG 2 cut(s) 429, 630
AluBI AGCT 5 cut(s) 257, 323, 350, 574, 749
AluI AGCT 5 cut(s) 257, 323, 350, 574, 749
Alw21I GWGCWC 1 cut(s) 576
AlwI GGATC 1 cut(s) 629
Ama87I CYCGRG 1 cut(s) 446
AoxI GGCC 3 cut(s) 583, 698, 737
ApeKI GCWGC 1 cut(s) 749
AspLEI GCGC 1 cut(s) 218
AspS9I GGNCC 2 cut(s) 450, 698
AsuC2I CCSGG 2 cut(s) 447, 448
AsuHPI GGTGA 2 cut(s) 159, 540
AvaI CYCGRG 1 cut(s) 446
AvaII GGWCC 1 cut(s) 450
BaeI ACNNNNGTAYC 1 cut(s) 36
BanII GRGCYC 1 cut(s) 576
BauI CACGAG 2 cut(s) 527, 587
BbsI GAAGAC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 576
BbvI GCAGC 1 cut(s) 736
BccI CCATC 4 cut(s) 10, 226, 560, 596
BciT130I CCWGG 2 cut(s) 431, 632
BciVI GTATCC 1 cut(s) 676
BcnI CCSGG 2 cut(s) 447, 448
BfaI CTAG 2 cut(s) 278, 593
BfrI CTTAAG 2 cut(s) 128, 616
BfuI GTATCC 1 cut(s) 676
BglII AGATCT 1 cut(s) 204
BisI GCNGC 2 cut(s) 750, 753
BlsI GCNGC 2 cut(s) 751, 754
Bme1390I CCNGG 4 cut(s) 431, 447, 448, 632
Bme18I GGWCC 1 cut(s) 450
BmeT110I CYCGRG 1 cut(s) 446
BmgT120I GGNCC 2 cut(s) 450, 698
BmiI GGNNCC 1 cut(s) 451
BmrFI CCNGG 4 cut(s) 431, 447, 448, 632
BmrI ACTGGG 2 cut(s) 534, 651
BmuI ACTGGG 2 cut(s) 534, 651
BpiI GAAGAC 1 cut(s) 103
BpuMI CCSGG 2 cut(s) 447, 448
BsaJI CCNNGG 4 cut(s) 429, 446, 630, 631
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 4 cut(s) 151, 309, 430, 557
Bse1I ACTGG 2 cut(s) 540, 657
Bse3DI GCAATG 1 cut(s) 711
BseBI CCWGG 2 cut(s) 431, 632
BseDI CCNNGG 4 cut(s) 429, 446, 630, 631
BseGI GGATG 4 cut(s) 389, 420, 607, 650
BseLI CCNNNNNNNGG 4 cut(s) 151, 309, 430, 557
BseMI GCAATG 1 cut(s) 711
BseNI ACTGG 2 cut(s) 540, 657
BseRI GAGGAG 3 cut(s) 215, 342, 748
BseXI GCAGC 1 cut(s) 736
BshFI GGCC 3 cut(s) 585, 700, 739
BsiHKAI GWGCWC 1 cut(s) 576
BsiHKCI CYCGRG 1 cut(s) 446
BsiSI CCGG 1 cut(s) 447
BslFI GGGAC 1 cut(s) 450
BslI CCNNNNNNNGG 4 cut(s) 151, 309, 430, 557
BsmFI GGGAC 1 cut(s) 450
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 3 cut(s) 585, 700, 739
BsoBI CYCGRG 1 cut(s) 446
Bsp1286I GDGCHC 1 cut(s) 576
Bsp1407I TGTACA 1 cut(s) 723
Bsp143I GATC 3 cut(s) 36, 204, 621
BspACI CCGC 3 cut(s) 482, 752, 775
BspANI GGCC 3 cut(s) 585, 700, 739
BspLI GGNNCC 1 cut(s) 451
BspPI GGATC 1 cut(s) 629
BspTI CTTAAG 2 cut(s) 128, 616
BsrDI GCAATG 1 cut(s) 711
BsrGI TGTACA 1 cut(s) 723
BsrI ACTGG 2 cut(s) 540, 657
BssECI CCNNGG 4 cut(s) 429, 446, 630, 631
BssMI GATC 3 cut(s) 36, 204, 621
BssSI CACGAG 2 cut(s) 527, 587
Bst2BI CACGAG 2 cut(s) 527, 587
Bst2UI CCWGG 2 cut(s) 431, 632
Bst4CI ACNGT 4 cut(s) 250, 466, 508, 772
Bst6I CTCTTC 1 cut(s) 62
BstAFI CTTAAG 2 cut(s) 128, 616
BstAUI TGTACA 1 cut(s) 723
BstC8I GCNNGC 5 cut(s) 69, 268, 406, 718, 757
BstDEI CTNAG 5 cut(s) 33, 196, 319, 377, 398
BstEII GGTNACC 1 cut(s) 546
BstF5I GGATG 4 cut(s) 389, 420, 607, 650
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 3 cut(s) 39, 207, 624
BstMBI GATC 3 cut(s) 36, 204, 621
BstMWI GCNNNNNNNGC 2 cut(s) 263, 571
BstNI CCWGG 2 cut(s) 431, 632
BstNSI RCATGY 2 cut(s) 408, 724
BstPI GGTNACC 1 cut(s) 546
BstSCI CCNGG 4 cut(s) 429, 445, 446, 630
BstV1I GCAGC 1 cut(s) 736
BstV2I GAAGAC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
BsuI GTATCC 1 cut(s) 676
BsuRI GGCC 3 cut(s) 585, 700, 739
BtgZI GCGATG 2 cut(s) 651, 658
BtsCI GGATG 4 cut(s) 389, 420, 607, 650
BtsIMutI CAGTG 2 cut(s) 547, 664
Cac8I GCNNGC 5 cut(s) 69, 268, 406, 718, 757
CfoI GCGC 1 cut(s) 218
Cfr13I GGNCC 2 cut(s) 450, 698
Cfr9I CCCGGG 1 cut(s) 446
Csp6I GTAC 3 cut(s) 29, 142, 724
CviAII CATG 6 cut(s) 85, 327, 405, 410, 556, 721
CviQI GTAC 3 cut(s) 29, 142, 724
DdeI CTNAG 5 cut(s) 33, 196, 319, 377, 398
DpnI GATC 3 cut(s) 38, 206, 623
DpnII GATC 3 cut(s) 36, 204, 621
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Ecl136II GAGCTC 1 cut(s) 574
Eco147I AGGCCT 2 cut(s) 585, 739
Eco24I GRGCYC 1 cut(s) 576
Eco47I GGWCC 1 cut(s) 450
Eco53kI GAGCTC 1 cut(s) 574
Eco88I CYCGRG 1 cut(s) 446
Eco91I GGTNACC 1 cut(s) 546
EcoICRI GAGCTC 1 cut(s) 574
EcoO65I GGTNACC 1 cut(s) 546
EcoRII CCWGG 2 cut(s) 429, 630
EcoT38I GRGCYC 1 cut(s) 576
FaeI CATG 6 cut(s) 88, 330, 408, 413, 559, 724
FaqI GGGAC 1 cut(s) 450
FatI CATG 6 cut(s) 84, 326, 404, 409, 555, 720
FblI GTMKAC 1 cut(s) 287
Fnu4HI GCNGC 2 cut(s) 750, 753
FokI GGATG 4 cut(s) 396, 407, 614, 657
FriOI GRGCYC 1 cut(s) 576
Fsp4HI GCNGC 2 cut(s) 750, 753
FspBI CTAG 2 cut(s) 278, 593
GlaI GCGC 1 cut(s) 217
GluI GCNGC 2 cut(s) 750, 753
HaeIII GGCC 3 cut(s) 585, 700, 739
HapII CCGG 1 cut(s) 447
HhaI GCGC 1 cut(s) 218
Hin1II CATG 6 cut(s) 88, 330, 408, 413, 559, 724
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HincII GTYRAC 3 cut(s) 43, 246, 345
HindII GTYRAC 3 cut(s) 43, 246, 345
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 5 cut(s) 4, 49, 92, 237, 455
HpaI GTTAAC 1 cut(s) 43
HpaII CCGG 1 cut(s) 447
HphI GGTGA 2 cut(s) 159, 540
Hpy166II GTNNAC 5 cut(s) 43, 246, 288, 345, 726
Hpy188I TCNGA 2 cut(s) 91, 454
Hpy188III TCNNGA 5 cut(s) 8, 96, 229, 424, 527
Hpy8I GTNNAC 5 cut(s) 43, 246, 288, 345, 726
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 4 cut(s) 250, 466, 508, 772
HpyCH4IV ACGT 2 cut(s) 45, 108
HpyCH4V TGCA 3 cut(s) 71, 404, 759
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 571
HpyF3I CTNAG 5 cut(s) 33, 196, 319, 377, 398
HpySE526I ACGT 2 cut(s) 45, 108
Hsp92II CATG 6 cut(s) 88, 330, 408, 413, 559, 724
HspAI GCGC 1 cut(s) 216
KspAI GTTAAC 1 cut(s) 43
Kzo9I GATC 3 cut(s) 36, 204, 621
LmnI GCTCC 4 cut(s) 328, 355, 579, 746
Lsp1109I GCAGC 1 cut(s) 736
MaeI CTAG 2 cut(s) 278, 593
MaeII ACGT 2 cut(s) 45, 108
MaeIII GTNAC 4 cut(s) 391, 416, 546, 647
MalI GATC 3 cut(s) 38, 206, 623
MboI GATC 3 cut(s) 36, 204, 621
MboII GAAGA 2 cut(s) 49, 103
MflI RGATCY 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 576
MluCI AATT 1 cut(s) 307
MlyI GAGTC 3 cut(s) 101, 246, 449
MmeI TCCRAC 1 cut(s) 477
MseI TTAA 3 cut(s) 42, 129, 617
MspCI CTTAAG 2 cut(s) 128, 616
MspI CCGG 1 cut(s) 447
MspR9I CCNGG 4 cut(s) 431, 447, 448, 632
Mva1269I GAATGC 1 cut(s) 71
MvaI CCWGG 2 cut(s) 431, 632
MwoI GCNNNNNNNGC 2 cut(s) 263, 571
NciI CCSGG 2 cut(s) 447, 448
NdeII GATC 3 cut(s) 36, 204, 621
NlaIII CATG 6 cut(s) 88, 330, 408, 413, 559, 724
NlaIV GGNNCC 1 cut(s) 451
NmuCI GTSAC 3 cut(s) 416, 546, 647
NspI RCATGY 2 cut(s) 408, 724
PaeI GCATGC 1 cut(s) 408
PasI CCCWGGG 1 cut(s) 631
PceI AGGCCT 2 cut(s) 585, 739
PctI GAATGC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 2 cut(s) 751, 754
PleI GAGTC 3 cut(s) 100, 245, 449
PpsI GAGTC 3 cut(s) 100, 245, 449
Psp124BI GAGCTC 1 cut(s) 576
Psp6I CCWGG 2 cut(s) 429, 630
PspEI GGTNACC 1 cut(s) 546
PspGI CCWGG 2 cut(s) 429, 630
PspN4I GGNNCC 1 cut(s) 451
PspPI GGNCC 2 cut(s) 450, 698
PsuI RGATCY 1 cut(s) 204
RsaI GTAC 3 cut(s) 30, 143, 725
RsaNI GTAC 3 cut(s) 29, 142, 724
SacI GAGCTC 1 cut(s) 576
SaqAI TTAA 3 cut(s) 42, 129, 617
SatI GCNGC 2 cut(s) 750, 753
Sau3AI GATC 3 cut(s) 36, 204, 621
Sau96I GGNCC 2 cut(s) 450, 698
SchI GAGTC 3 cut(s) 101, 246, 449
ScrFI CCNGG 4 cut(s) 431, 447, 448, 632
SduI GDGCHC 1 cut(s) 576
SinI GGWCC 1 cut(s) 450
SmaI CCCGGG 1 cut(s) 448
SmlI CTYRAG 2 cut(s) 128, 616
SmoI CTYRAG 2 cut(s) 128, 616
SphI GCATGC 1 cut(s) 408
Sse9I AATT 1 cut(s) 307
SseBI AGGCCT 2 cut(s) 585, 739
SsiI CCGC 3 cut(s) 482, 752, 775
SspI AATATT 1 cut(s) 360
SspMI CTAG 2 cut(s) 278, 593
SstI GAGCTC 1 cut(s) 576
StuI AGGCCT 2 cut(s) 585, 739
StyD4I CCNGG 4 cut(s) 429, 445, 446, 630
TaaI ACNGT 4 cut(s) 250, 466, 508, 772
TaiI ACGT 2 cut(s) 48, 111
TasI AATT 1 cut(s) 307
TatI WGTACW 1 cut(s) 723
TauI GCSGC 1 cut(s) 755
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 3 cut(s) 42, 129, 617
Tru9I TTAA 3 cut(s) 42, 129, 617
TscAI CASTG 2 cut(s) 547, 664
TseFI GTSAC 3 cut(s) 416, 546, 647
TseI GCWGC 1 cut(s) 749
Tsp45I GTSAC 3 cut(s) 416, 546, 647
TspDTI ATGAA 3 cut(s) 41, 249, 426
TspMI CCCGGG 1 cut(s) 446
TspRI CASTG 2 cut(s) 547, 664
Vha464I CTTAAG 2 cut(s) 128, 616
VpaK11BI GGWCC 1 cut(s) 450
XceI RCATGY 2 cut(s) 408, 724
XmaI CCCGGG 1 cut(s) 446
XmiI GTMKAC 1 cut(s) 287
XspI CTAG 2 cut(s) 278, 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.