pycom13g25670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000158
Physical Location & Seq
Forward (+)
22379560 .. 22380998
1439 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g25670.6

Sequence Viewer

Length: 1230 bp
ATGTTGTTAGTTCATAGTTATTTTAGTAGTTTAAGCTATTTTCGTGTGTTTTTAGTTCATATGGCTAAGGAAGCAAAAATGCTTGGAGCAAAAGGAATGGGCGAAATTGAAGACTTAAAGGTGTTAGGATTCCTAATCAAAATAGGATTCCTAATCAAAGAAGGATTCCTAATCAAAGAAGGATTCCTAATCAATGTAGGAAACCTAAATATCCCTAAGTTCCAGCATGTCACATCCCGGCCCGGGGCGGATCACTTCCCGGGCCCGCTCCACCACCGTAGCACGATATTGTCCGCTTTGGGCTTACCATTCCCTCACGGTTTTGTTTTTGGGAACTCACGAGCAACTTCCCAGTGGGTCACCCATCATGGGATTGCTCTAACCCCTTCTCGCTTAACTTCGGAGTTCCTACGGAACCCGAAGCCAGTGAGCTCCCAAAAGCACTCCCCTGGGCGATGTGGGATGTTACAATCCACCCCCCTTAGGGACCAATTTGTCACATCCCGGCCCGGGCGGGACCACTTCCCGGGCCCGCTCCACCACCGTAGCACGATATTGTCCGCTTTGGGCCCCGACCACGCCCTCACGGTTTTGTTTTTGGGAACTCACACGAGAACTTCCCGTTGGGTCACCCATCCTGGGAGTGCTCTCGCGCGCTACTCGCTTAACTTCGGAGTTCCTATGGAACCCGAAGCCAGTGAGCTCCCAAAAGGCCTCATGCTAGGTAAGGATGGGAATATACATTTAAGGATCACTCCCCTGGGCGATGTGGGATGTCACAATCCACCCCCTTTAGGGGCCCGACGTCCTCGTCGGCACAACACGGCCAGGGTTAGGCTCTTATACCAAATTGTCACATCCCGGCCCGGTGCGGACCACTTCCCGGGCCCGCTCCCCCACTGTAGCACGATATTGTCCGCTTTGGGCTTACCATTCCCTCATGGTTTTGTTTTTGGGAACTCACGAGCAACTTCCCAATGGGTCACCCATCATGGGATTGCTCTAACCCCTTCTCGCTTAACTTCGGAGTTCCTACGGAACCCGAAGCCAGTGAGCTCCCAAAAGCACTCCCCTGGGCGATGTGGGATGTTACACAGCAACTTTGAAGATACCTTATGTATTTTAGGACATAAACCAAAGATTCCTTGCACTATCCTAGTCCTTGCCGCATATATCCTTACCCTTTTCTTCCAAAATCTGCCATATATCTTATTTCCCCTTTTCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

410

Amino Acids

45.23

Weight (kDa)

10.31

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 494, 810
AatII GACGTC 1 cut(s) 808
AccBSI CCGCTC 3 cut(s) 268, 535, 892
AccII CGCG 2 cut(s) 653, 655
AclWI GGATC 2 cut(s) 258, 758
AcoI YGGCCR 1 cut(s) 825
AcyI GRCGYC 1 cut(s) 805
AgsI TTSAA 2 cut(s) 110, 1106
AjnI CCWGG 5 cut(s) 448, 637, 759, 827, 1072
AjuI GAANNNNNNNTTGG 2 cut(s) 607, 639
AluBI AGCT 4 cut(s) 36, 432, 703, 1056
AluI AGCT 4 cut(s) 36, 432, 703, 1056
Alw21I GWGCWC 4 cut(s) 434, 649, 705, 1058
AlwI GGATC 2 cut(s) 258, 758
Ama87I CYCGRG 5 cut(s) 242, 259, 509, 526, 883
ApaI GGGCCC 5 cut(s) 266, 533, 572, 802, 890
AspLEI GCGC 2 cut(s) 655, 657
AsuHPI GGTGA 3 cut(s) 352, 622, 976
AvaI CYCGRG 5 cut(s) 242, 259, 509, 526, 883
AvaII GGWCC 3 cut(s) 487, 517, 874
AxyI CCTNAGG 1 cut(s) 482
BaeGI GKGCMC 5 cut(s) 266, 533, 572, 802, 890
BanII GRGCYC 8 cut(s) 266, 434, 533, 572, 705, 802, 890, 1058
BauI CACGAG 3 cut(s) 339, 610, 963
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 4 cut(s) 434, 649, 705, 1058
BccI CCATC 4 cut(s) 372, 642, 725, 996
BceAI ACGGC 1 cut(s) 840
BciT130I CCWGG 5 cut(s) 450, 639, 761, 829, 1074
BfaI CTAG 3 cut(s) 722, 1157, 1228
BfmI CTRYAG 1 cut(s) 901
BisI GCNGC 1 cut(s) 1167
BlsI GCNGC 1 cut(s) 1168
Bme18I GGWCC 3 cut(s) 487, 517, 874
BmeT110I CYCGRG 5 cut(s) 242, 259, 509, 526, 883
BmrI ACTGGG 1 cut(s) 346
BmuI ACTGGG 1 cut(s) 346
BpiI GAAGAC 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 66
BsaHI GRCGYC 1 cut(s) 805
Bse1I ACTGG 4 cut(s) 352, 425, 696, 1049
Bse21I CCTNAGG 1 cut(s) 482
BseBI CCWGG 5 cut(s) 450, 639, 761, 829, 1074
BseGI GGATG 8 cut(s) 233, 468, 500, 634, 736, 779, 857, 1092
BseNI ACTGG 4 cut(s) 352, 425, 696, 1049
BsePI GCGCGC 1 cut(s) 653
BseSI GKGCMC 5 cut(s) 266, 533, 572, 802, 890
Bsh1236I CGCG 2 cut(s) 653, 655
BsiHKAI GWGCWC 4 cut(s) 434, 649, 705, 1058
BsiHKCI CYCGRG 5 cut(s) 242, 259, 509, 526, 883
BsiSI CCGG 9 cut(s) 238, 243, 260, 505, 510, 527, 862, 867, 884
BslFI GGGAC 2 cut(s) 500, 530
BsmFI GGGAC 2 cut(s) 500, 530
BsoBI CYCGRG 5 cut(s) 242, 259, 509, 526, 883
Bsp120I GGGCCC 5 cut(s) 262, 529, 568, 798, 886
Bsp1286I GDGCHC 9 cut(s) 266, 434, 533, 572, 649, 705, 802, 890, 1058
Bsp143I GATC 2 cut(s) 250, 750
BspFNI CGCG 2 cut(s) 653, 655
BspPI GGATC 2 cut(s) 258, 758
BsrBI CCGCTC 3 cut(s) 268, 535, 892
BsrI ACTGG 4 cut(s) 352, 425, 696, 1049
BssHII GCGCGC 1 cut(s) 653
BssMI GATC 2 cut(s) 250, 750
BssNI GRCGYC 1 cut(s) 805
BssSI CACGAG 3 cut(s) 339, 610, 963
Bst2BI CACGAG 3 cut(s) 339, 610, 963
Bst2UI CCWGG 5 cut(s) 450, 639, 761, 829, 1074
Bst4CI ACNGT 5 cut(s) 278, 320, 545, 589, 902
BstACI GRCGYC 1 cut(s) 805
BstC8I GCNNGC 4 cut(s) 266, 533, 655, 890
BstDEI CTNAG 3 cut(s) 66, 216, 482
BstEII GGTNACC 3 cut(s) 358, 628, 982
BstF5I GGATG 8 cut(s) 233, 468, 500, 634, 736, 779, 857, 1092
BstFNI CGCG 2 cut(s) 653, 655
BstHHI GCGC 2 cut(s) 655, 657
BstKTI GATC 2 cut(s) 253, 753
BstMBI GATC 2 cut(s) 250, 750
BstMWI GCNNNNNNNGC 2 cut(s) 71, 661
BstNI CCWGG 5 cut(s) 450, 639, 761, 829, 1074
BstNSI RCATGY 1 cut(s) 230
BstPI GGTNACC 3 cut(s) 358, 628, 982
BstSFI CTRYAG 1 cut(s) 901
BstSLI GKGCMC 5 cut(s) 266, 533, 572, 802, 890
BstUI CGCG 2 cut(s) 653, 655
BstV2I GAAGAC 1 cut(s) 117
Bsu36I CCTNAGG 1 cut(s) 482
BtgZI GCGATG 3 cut(s) 469, 780, 1093
BtsCI GGATG 8 cut(s) 233, 468, 500, 634, 736, 779, 857, 1092
BtsIMutI CAGTG 5 cut(s) 359, 432, 703, 898, 1056
Cac8I GCNNGC 4 cut(s) 266, 533, 655, 890
CfoI GCGC 2 cut(s) 655, 657
Cfr9I CCCGGG 5 cut(s) 242, 259, 509, 526, 883
CviAII CATG 5 cut(s) 227, 368, 718, 941, 992
DdeI CTNAG 3 cut(s) 66, 216, 482
DpnI GATC 2 cut(s) 252, 752
DpnII GATC 2 cut(s) 250, 750
DrdI GACNNNNNNGTC 2 cut(s) 494, 810
DseDI GACNNNNNNGTC 2 cut(s) 494, 810
EaeI YGGCCR 1 cut(s) 825
EciI GGCGGA 1 cut(s) 263
Ecl136II GAGCTC 3 cut(s) 432, 703, 1056
Eco147I AGGCCT 1 cut(s) 714
Eco24I GRGCYC 8 cut(s) 266, 434, 533, 572, 705, 802, 890, 1058
Eco47I GGWCC 3 cut(s) 487, 517, 874
Eco53kI GAGCTC 3 cut(s) 432, 703, 1056
Eco81I CCTNAGG 1 cut(s) 482
Eco88I CYCGRG 5 cut(s) 242, 259, 509, 526, 883
Eco91I GGTNACC 3 cut(s) 358, 628, 982
EcoICRI GAGCTC 3 cut(s) 432, 703, 1056
EcoO109I RGGNCCY 2 cut(s) 569, 798
EcoO65I GGTNACC 3 cut(s) 358, 628, 982
EcoRII CCWGG 5 cut(s) 448, 637, 759, 827, 1072
EcoT38I GRGCYC 8 cut(s) 266, 434, 533, 572, 705, 802, 890, 1058
FaeI CATG 5 cut(s) 230, 371, 721, 944, 995
FaqI GGGAC 2 cut(s) 500, 530
FatI CATG 5 cut(s) 226, 367, 717, 940, 991
FauI CCCGC 4 cut(s) 273, 507, 540, 897
FauNDI CATATG 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 1167
FokI GGATG 8 cut(s) 220, 475, 487, 621, 743, 786, 844, 1099
FriOI GRGCYC 8 cut(s) 266, 434, 533, 572, 705, 802, 890, 1058
Fsp4HI GCNGC 1 cut(s) 1167
FspBI CTAG 3 cut(s) 722, 1157, 1228
GlaI GCGC 2 cut(s) 654, 656
GluI GCNGC 1 cut(s) 1167
HapII CCGG 9 cut(s) 238, 243, 260, 505, 510, 527, 862, 867, 884
HhaI GCGC 2 cut(s) 655, 657
Hin1I GRCGYC 1 cut(s) 805
Hin1II CATG 5 cut(s) 230, 371, 721, 944, 995
Hin6I GCGC 2 cut(s) 653, 655
HinP1I GCGC 2 cut(s) 653, 655
HinfI GANTC 5 cut(s) 129, 147, 165, 183, 1141
HpaII CCGG 9 cut(s) 238, 243, 260, 505, 510, 527, 862, 867, 884
HphI GGTGA 3 cut(s) 352, 622, 976
Hpy188I TCNGA 3 cut(s) 403, 674, 1027
Hpy188III TCNNGA 2 cut(s) 339, 963
Hpy99I CGWCG 2 cut(s) 807, 816
HpyAV CCTTC 4 cut(s) 155, 173, 396, 1020
HpyCH4III ACNGT 5 cut(s) 278, 320, 545, 589, 902
HpyCH4IV ACGT 1 cut(s) 805
HpyCH4V TGCA 1 cut(s) 1149
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 661
HpyF3I CTNAG 3 cut(s) 66, 216, 482
HpySE526I ACGT 1 cut(s) 805
Hsp92I GRCGYC 1 cut(s) 805
Hsp92II CATG 5 cut(s) 230, 371, 721, 944, 995
HspAI GCGC 2 cut(s) 653, 655
Kzo9I GATC 2 cut(s) 250, 750
LmnI GCTCC 7 cut(s) 86, 273, 437, 540, 708, 897, 1061
MaeI CTAG 3 cut(s) 722, 1157, 1228
MaeII ACGT 1 cut(s) 805
MaeIII GTNAC 9 cut(s) 229, 358, 465, 496, 628, 776, 853, 982, 1089
MalI GATC 2 cut(s) 252, 752
MbiI CCGCTC 3 cut(s) 268, 535, 892
MboI GATC 2 cut(s) 250, 750
MboII GAAGA 4 cut(s) 122, 1118, 1180, 1216
MhlI GDGCHC 9 cut(s) 266, 434, 533, 572, 649, 705, 802, 890, 1058
MluCI AATT 3 cut(s) 105, 491, 849
MnlI CCTC 5 cut(s) 324, 593, 725, 819, 948
MseI TTAA 6 cut(s) 32, 116, 395, 666, 746, 1019
MspI CCGG 9 cut(s) 238, 243, 260, 505, 510, 527, 862, 867, 884
MvaI CCWGG 5 cut(s) 450, 639, 761, 829, 1074
MvnI CGCG 2 cut(s) 653, 655
MwoI GCNNNNNNNGC 2 cut(s) 71, 661
NdeI CATATG 1 cut(s) 60
NdeII GATC 2 cut(s) 250, 750
NlaIII CATG 5 cut(s) 230, 371, 721, 944, 995
NmuCI GTSAC 7 cut(s) 229, 358, 496, 628, 776, 853, 982
NspI RCATGY 1 cut(s) 230
PasI CCCWGGG 3 cut(s) 449, 760, 1073
PauI GCGCGC 1 cut(s) 653
PceI AGGCCT 1 cut(s) 714
PfeI GAWTC 5 cut(s) 129, 147, 165, 183, 1141
PkrI GCNGC 1 cut(s) 1168
Psp124BI GAGCTC 3 cut(s) 434, 705, 1058
Psp6I CCWGG 5 cut(s) 448, 637, 759, 827, 1072
PspEI GGTNACC 3 cut(s) 358, 628, 982
PspGI CCWGG 5 cut(s) 448, 637, 759, 827, 1072
PspOMI GGGCCC 5 cut(s) 262, 529, 568, 798, 886
PteI GCGCGC 1 cut(s) 653
SacI GAGCTC 3 cut(s) 434, 705, 1058
SaqAI TTAA 6 cut(s) 32, 116, 395, 666, 746, 1019
SatI GCNGC 1 cut(s) 1167
Sau3AI GATC 2 cut(s) 250, 750
SduI GDGCHC 9 cut(s) 266, 434, 533, 572, 649, 705, 802, 890, 1058
SetI ASST 9 cut(s) 38, 123, 207, 434, 705, 727, 808, 1058, 1115
SfcI CTRYAG 1 cut(s) 901
SinI GGWCC 3 cut(s) 487, 517, 874
SmaI CCCGGG 5 cut(s) 244, 261, 511, 528, 885
SrfI GCCCGGGC 1 cut(s) 511
Sse9I AATT 3 cut(s) 105, 491, 849
SseBI AGGCCT 1 cut(s) 714
SspMI CTAG 3 cut(s) 722, 1157, 1228
SstI GAGCTC 3 cut(s) 434, 705, 1058
StuI AGGCCT 1 cut(s) 714
TaaI ACNGT 5 cut(s) 278, 320, 545, 589, 902
TaiI ACGT 1 cut(s) 808
TasI AATT 3 cut(s) 105, 491, 849
TauI GCSGC 1 cut(s) 1169
TfiI GAWTC 5 cut(s) 129, 147, 165, 183, 1141
Tru1I TTAA 6 cut(s) 32, 116, 395, 666, 746, 1019
Tru9I TTAA 6 cut(s) 32, 116, 395, 666, 746, 1019
TscAI CASTG 5 cut(s) 359, 432, 703, 905, 1056
TseFI GTSAC 7 cut(s) 229, 358, 496, 628, 776, 853, 982
Tsp45I GTSAC 7 cut(s) 229, 358, 496, 628, 776, 853, 982
TspDTI ATGAA 1 cut(s) 47
TspGWI ACGGA 2 cut(s) 427, 1051
TspMI CCCGGG 5 cut(s) 242, 259, 509, 526, 883
TspRI CASTG 5 cut(s) 359, 432, 703, 905, 1056
VpaK11BI GGWCC 3 cut(s) 487, 517, 874
XceI RCATGY 1 cut(s) 230
XmaI CCCGGG 5 cut(s) 242, 259, 509, 526, 883
XspI CTAG 3 cut(s) 722, 1157, 1228
ZraI GACGTC 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.