pycom01g04100

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000158
Physical Location & Seq
Forward (+)
3123419 .. 3124949
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g04100.6

Sequence Viewer

Length: 1098 bp
ATGAGAATATACAGCTTTAAGGATCACTCCCCTAAGCGATGTGGGATGTCACAATCCACCCCCCTTAGGGGCCTGACGTCCTCTGTCACATCCTGGCCAGGGGCAGATCATTTCCCGGGCCTGCTCCACCACCGTAGCACGATATTGTCCGCTTTGGGCTTACCATTCCCTCACGGTTTTGTTTTTGGGAACTCACGAGCAACTTCCCAGTGGGTCACCCATCATGGGATTGCTCTAGCCCCCTTCTCGCTTAACTTCGGAGTTCTGATGGAACTCGAAGCCAGTCAGCTCCCAAAAGACCTCGTGCTAGGTAGGGATGAGAATATACATTTAAGGATCACTCCCCTGGGCGATTGCAGGTGTTGGATGATGGTGGTTAAATGGGAAAAATGGTGGAAACCGCCAAAAATTTGGTCGGGTGGGTGCACGGATAGGTCGACCGAAAAGGAAGGCTGGGAGCTTTCTCTCCCCTCTCCTCTAATTTCTGGTTGGGTGGGTGATAGAGATTTTACCACTTGCAAAAGTAGTTGTAGTATAAGTGGCTCAAGTAAGGTTGTTTTCCTATTTGAAAACAAAGATTGGAAGAGGTTGGTTTTGAATTTAAAAATAATAAAAACGAATTTAATTAAAAAGGTTAAAGAAATCAGCAAAGTAACTAAAACAAAGGAAAACATTTTGAAAACCAAATTGCAAAAGCCTAGGGTTCCTTTAGGTTTTCCTAAAGTAAGCCCTACTTGGAACCCCAACATAGAATGTATATCTAACATGCAACCCGTTCGTAGCATCCAGATCGAATGTGAACATGCAAGACTCATTAAGTTTTGTGAAAACCTTTTGAAAAACCATGTAACTCCTAAGACGTTTCTCAATTTTAGGGACAGCCCTCTGCCAAAATTACATCCAACTACTTATCTAAACATCCTAATGGTACATAAGCAATTAAATAAAAACTACATATTCATGCTAAGGCTCAAGGCATCACCCTATATTAAGAAAATGGATAGAAAACACCTTGAAAATAAACTTGAATCGTTAAAAGCTCTCCAAAGCCAAAGTATTGCGTTCTCCCCCCCCCCCCTTTCTCTCTCTCTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan Lig_chan-Glu_bd SBP_bac_3

Protein Analysis

366

Amino Acids

41.63

Weight (kDa)

9.87

Isoelectric Point (pI)

54.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 348
AatII GACGTC 1 cut(s) 80
Acc36I ACCTGC 1 cut(s) 348
AccI GTMKAC 1 cut(s) 437
AciI CCGC 2 cut(s) 150, 401
AclWI GGATC 2 cut(s) 30, 344
AcoI YGGCCR 1 cut(s) 95
AcsI RAATTY 3 cut(s) 408, 598, 619
AcyI GRCGYC 1 cut(s) 77
AfaI GTAC 1 cut(s) 930
AfiI CCNNNNNNNGG 5 cut(s) 66, 67, 68, 99, 225
AgsI TTSAA 6 cut(s) 569, 598, 679, 838, 1016, 1028
AjnI CCWGG 3 cut(s) 92, 97, 345
AluBI AGCT 4 cut(s) 15, 289, 460, 1040
AluI AGCT 4 cut(s) 15, 289, 460, 1040
Alw21I GWGCWC 1 cut(s) 428
Alw44I GTGCAC 1 cut(s) 424
AlwI GGATC 2 cut(s) 30, 344
Ama87I CYCGRG 1 cut(s) 115
AoxI GGCC 3 cut(s) 70, 95, 118
ApaLI GTGCAC 1 cut(s) 424
ApoI RAATTY 3 cut(s) 408, 598, 619
ArsI GACNNNNNNTTYG 2 cut(s) 398, 430
AspA2I CCTAGG 1 cut(s) 698
AspS9I GGNCC 2 cut(s) 70, 118
AsuC2I CCSGG 2 cut(s) 116, 117
AsuHPI GGTGA 3 cut(s) 208, 509, 972
AvaI CYCGRG 1 cut(s) 115
AvrII CCTAGG 1 cut(s) 698
AxyI CCTNAGG 1 cut(s) 65
BaeGI GKGCMC 1 cut(s) 428
BalI TGGCCA 1 cut(s) 97
BauI CACGAG 2 cut(s) 195, 302
Bbv12I GWGCWC 1 cut(s) 428
BccI CCATC 3 cut(s) 228, 262, 364
BcgI CGANNNNNNTGC 4 cut(s) 758, 772, 792, 806
BciT130I CCWGG 3 cut(s) 94, 99, 347
BcnI CCSGG 2 cut(s) 116, 117
BfaI CTAG 3 cut(s) 236, 308, 699
BfuAI ACCTGC 1 cut(s) 348
BlnI CCTAGG 1 cut(s) 698
Bme1390I CCNGG 5 cut(s) 94, 99, 116, 117, 347
BmeT110I CYCGRG 1 cut(s) 115
BmgT120I GGNCC 2 cut(s) 70, 118
BmiI GGNNCC 3 cut(s) 71, 705, 740
BmrFI CCNGG 5 cut(s) 94, 99, 116, 117, 347
BmrI ACTGGG 1 cut(s) 202
BmsI GCATC 2 cut(s) 792, 986
BmuI ACTGGG 1 cut(s) 202
Bpu10I CCTNAGC 2 cut(s) 33, 965
BpuEI CTTGAG 2 cut(s) 529, 956
BpuMI CCSGG 2 cut(s) 116, 117
BsaHI GRCGYC 1 cut(s) 77
BsaJI CCNNGG 5 cut(s) 98, 115, 345, 346, 698
Bsc4I CCNNNNNNNGG 5 cut(s) 66, 67, 68, 99, 225
Bse1I ACTGG 2 cut(s) 208, 282
Bse21I CCTNAGG 1 cut(s) 65
BseBI CCWGG 3 cut(s) 94, 99, 347
BseDI CCNNGG 5 cut(s) 98, 115, 345, 346, 698
BseGI GGATG 7 cut(s) 51, 89, 322, 372, 783, 898, 918
BseLI CCNNNNNNNGG 5 cut(s) 66, 67, 68, 99, 225
BseNI ACTGG 2 cut(s) 208, 282
BseRI GAGGAG 1 cut(s) 465
BseSI GKGCMC 1 cut(s) 428
BseYI CCCAGC 1 cut(s) 453
Bsh1285I CGRYCG 1 cut(s) 441
BshFI GGCC 3 cut(s) 72, 97, 120
BsiEI CGRYCG 1 cut(s) 441
BsiHKAI GWGCWC 1 cut(s) 428
BsiHKCI CYCGRG 1 cut(s) 115
BsiSI CCGG 1 cut(s) 116
BslFI GGGAC 1 cut(s) 890
BslI CCNNNNNNNGG 5 cut(s) 66, 67, 68, 99, 225
BsmFI GGGAC 1 cut(s) 890
BsnI GGCC 3 cut(s) 72, 97, 120
BsoBI CYCGRG 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 428
Bsp143I GATC 4 cut(s) 22, 106, 336, 789
BspACI CCGC 2 cut(s) 150, 401
BspANI GGCC 3 cut(s) 72, 97, 120
BspLI GGNNCC 3 cut(s) 71, 705, 740
BspMI ACCTGC 1 cut(s) 348
BspPI GGATC 2 cut(s) 30, 344
BsrI ACTGG 2 cut(s) 208, 282
BssECI CCNNGG 5 cut(s) 98, 115, 345, 346, 698
BssMI GATC 4 cut(s) 22, 106, 336, 789
BssNI GRCGYC 1 cut(s) 77
BssSI CACGAG 2 cut(s) 195, 302
BssT1I CCWWGG 1 cut(s) 698
Bst2BI CACGAG 2 cut(s) 195, 302
Bst2UI CCWGG 3 cut(s) 94, 99, 347
Bst4CI ACNGT 2 cut(s) 134, 176
Bst6I CTCTTC 1 cut(s) 578
BstACI GRCGYC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 4 cut(s) 33, 65, 855, 965
BstEII GGTNACC 1 cut(s) 214
BstF5I GGATG 7 cut(s) 51, 89, 322, 372, 783, 898, 918
BstKTI GATC 4 cut(s) 25, 109, 339, 792
BstMBI GATC 4 cut(s) 22, 106, 336, 789
BstMCI CGRYCG 1 cut(s) 441
BstNI CCWGG 3 cut(s) 94, 99, 347
BstNSI RCATGY 2 cut(s) 769, 806
BstPI GGTNACC 1 cut(s) 214
BstSCI CCNGG 5 cut(s) 92, 97, 114, 115, 345
BstSLI GKGCMC 1 cut(s) 428
BstXI CCANNNNNNTGG 1 cut(s) 411
Bsu36I CCTNAGG 1 cut(s) 65
BsuRI GGCC 3 cut(s) 72, 97, 120
BtgZI GCGATG 1 cut(s) 52
BtsCI GGATG 7 cut(s) 51, 89, 322, 372, 783, 898, 918
BtsIMutI CAGTG 1 cut(s) 215
BveI ACCTGC 1 cut(s) 348
Cac8I GCNNGC 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 70, 118
Cfr9I CCCGGG 1 cut(s) 115
Csp6I GTAC 1 cut(s) 929
CviAII CATG 5 cut(s) 224, 766, 803, 845, 961
CviQI GTAC 1 cut(s) 929
DdeI CTNAG 4 cut(s) 33, 65, 855, 965
DpnI GATC 4 cut(s) 24, 108, 338, 791
DpnII GATC 4 cut(s) 22, 106, 336, 789
DraI TTTAAA 1 cut(s) 603
EaeI YGGCCR 1 cut(s) 95
Eam1104I CTCTTC 1 cut(s) 578
EarI CTCTTC 1 cut(s) 578
Eco130I CCWWGG 1 cut(s) 698
Eco81I CCTNAGG 1 cut(s) 65
Eco88I CYCGRG 1 cut(s) 115
Eco91I GGTNACC 1 cut(s) 214
EcoO109I RGGNCCY 1 cut(s) 70
EcoO65I GGTNACC 1 cut(s) 214
EcoRII CCWGG 3 cut(s) 92, 97, 345
EcoT14I CCWWGG 1 cut(s) 698
ErhI CCWWGG 1 cut(s) 698
FaeI CATG 5 cut(s) 227, 769, 806, 848, 964
FalI AAGNNNNNCTT 2 cut(s) 718, 750
FaqI GGGAC 1 cut(s) 890
FatI CATG 5 cut(s) 223, 765, 802, 844, 960
FblI GTMKAC 1 cut(s) 437
FokI GGATG 7 cut(s) 58, 76, 329, 379, 770, 885, 905
FspBI CTAG 3 cut(s) 236, 308, 699
GsaI CCCAGC 1 cut(s) 457
HaeIII GGCC 3 cut(s) 72, 97, 120
HapII CCGG 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 5 cut(s) 227, 769, 806, 848, 964
HincII GTYRAC 1 cut(s) 438
HindII GTYRAC 1 cut(s) 438
HinfI GANTC 2 cut(s) 810, 1028
HpaII CCGG 1 cut(s) 116
HphI GGTGA 3 cut(s) 208, 509, 972
Hpy166II GTNNAC 3 cut(s) 426, 438, 800
Hpy188I TCNGA 2 cut(s) 260, 267
Hpy188III TCNNGA 2 cut(s) 195, 787
Hpy8I GTNNAC 3 cut(s) 426, 438, 800
HpyAV CCTTC 2 cut(s) 253, 443
HpyCH4III ACNGT 2 cut(s) 134, 176
HpyCH4IV ACGT 2 cut(s) 77, 860
HpyCH4V TGCA 6 cut(s) 357, 426, 519, 691, 769, 806
HpyF3I CTNAG 4 cut(s) 33, 65, 855, 965
HpySE526I ACGT 2 cut(s) 77, 860
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 5 cut(s) 227, 769, 806, 848, 964
Kzo9I GATC 4 cut(s) 22, 106, 336, 789
LmnI GCTCC 3 cut(s) 129, 294, 457
LweI GCATC 2 cut(s) 792, 986
MaeI CTAG 3 cut(s) 236, 308, 699
MaeII ACGT 2 cut(s) 77, 860
MaeIII GTNAC 5 cut(s) 48, 85, 214, 652, 847
MalI GATC 4 cut(s) 24, 108, 338, 791
MboI GATC 4 cut(s) 22, 106, 336, 789
MboII GAAGA 1 cut(s) 595
MhlI GDGCHC 1 cut(s) 428
MlsI TGGCCA 1 cut(s) 97
MluCI AATT 9 cut(s) 408, 480, 598, 619, 624, 686, 868, 893, 938
MluNI TGGCCA 1 cut(s) 97
MlyI GAGTC 1 cut(s) 804
MmeI TCCRAC 2 cut(s) 344, 926
MnlI CCTC 7 cut(s) 91, 180, 311, 481, 486, 579, 894
Mox20I TGGCCA 1 cut(s) 97
MscI TGGCCA 1 cut(s) 97
MslI CAYNNNNRTG 2 cut(s) 923, 959
Msp20I TGGCCA 1 cut(s) 97
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 5 cut(s) 94, 99, 116, 117, 347
MvaI CCWGG 3 cut(s) 94, 99, 347
NciI CCSGG 2 cut(s) 116, 117
NdeII GATC 4 cut(s) 22, 106, 336, 789
NlaIII CATG 5 cut(s) 227, 769, 806, 848, 964
NlaIV GGNNCC 3 cut(s) 71, 705, 740
NmuCI GTSAC 3 cut(s) 48, 85, 214
NspI RCATGY 2 cut(s) 769, 806
PacI TTAATTAA 1 cut(s) 627
PaqCI CACCTGC 1 cut(s) 348
PasI CCCWGGG 1 cut(s) 346
PcsI WCGNNNNNNNCGW 1 cut(s) 434
PfeI GAWTC 1 cut(s) 1028
PleI GAGTC 1 cut(s) 804
PpsI GAGTC 1 cut(s) 804
Psp6I CCWGG 3 cut(s) 92, 97, 345
PspEI GGTNACC 1 cut(s) 214
PspFI CCCAGC 1 cut(s) 453
PspGI CCWGG 3 cut(s) 92, 97, 345
PspN4I GGNNCC 3 cut(s) 71, 705, 740
PspPI GGNCC 2 cut(s) 70, 118
RsaI GTAC 1 cut(s) 930
RsaNI GTAC 1 cut(s) 929
RseI CAYNNNNRTG 2 cut(s) 923, 959
SalI GTCGAC 1 cut(s) 436
Sau3AI GATC 4 cut(s) 22, 106, 336, 789
Sau96I GGNCC 2 cut(s) 70, 118
SchI GAGTC 1 cut(s) 804
ScrFI CCNGG 5 cut(s) 94, 99, 116, 117, 347
SduI GDGCHC 1 cut(s) 428
SfaNI GCATC 2 cut(s) 792, 986
SmaI CCCGGG 1 cut(s) 117
SmiMI CAYNNNNRTG 2 cut(s) 923, 959
SmlI CTYRAG 2 cut(s) 544, 971
SmoI CTYRAG 2 cut(s) 544, 971
Sse9I AATT 9 cut(s) 408, 480, 598, 619, 624, 686, 868, 893, 938
SsiI CCGC 2 cut(s) 150, 401
SspMI CTAG 3 cut(s) 236, 308, 699
StyD4I CCNGG 5 cut(s) 92, 97, 114, 115, 345
StyI CCWWGG 1 cut(s) 698
TaaI ACNGT 2 cut(s) 134, 176
TaiI ACGT 2 cut(s) 80, 863
TaqI TCGA 3 cut(s) 276, 437, 792
TaqII GACCGA 1 cut(s) 455
TasI AATT 9 cut(s) 408, 480, 598, 619, 624, 686, 868, 893, 938
TfiI GAWTC 1 cut(s) 1028
TscAI CASTG 1 cut(s) 215
TseFI GTSAC 3 cut(s) 48, 85, 214
Tsp45I GTSAC 3 cut(s) 48, 85, 214
TspDTI ATGAA 1 cut(s) 949
TspGWI ACGGA 1 cut(s) 443
TspMI CCCGGG 1 cut(s) 115
TspRI CASTG 1 cut(s) 215
VneI GTGCAC 1 cut(s) 424
XapI RAATTY 3 cut(s) 408, 598, 619
XceI RCATGY 2 cut(s) 769, 806
XmaI CCCGGG 1 cut(s) 115
XmaJI CCTAGG 1 cut(s) 698
XmiI GTMKAC 1 cut(s) 437
XspI CTAG 3 cut(s) 236, 308, 699
ZraI GACGTC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.