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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 153 |
| AccB1I | GGYRCC | 1 cut(s) | 501 |
| AccII | CGCG | 2 cut(s) | 673, 958 |
| AccIII | TCCGGA | 1 cut(s) | 92 |
| AciI | CCGC | 3 cut(s) | 41, 198, 992 |
| AcoI | YGGCCR | 2 cut(s) | 300, 604 |
| AcsI | RAATTY | 1 cut(s) | 882 |
| AcuI | CTGAAG | 2 cut(s) | 229, 528 |
| AcyI | GRCGYC | 1 cut(s) | 502 |
| AfaI | GTAC | 2 cut(s) | 392, 628 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 18, 19, 20, 298 |
| AflIII | ACRYGT | 1 cut(s) | 168 |
| AgsI | TTSAA | 5 cut(s) | 31, 131, 136, 213, 783 |
| AjiI | CACGTC | 1 cut(s) | 459 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 74, 106 |
| AluBI | AGCT | 3 cut(s) | 651, 817, 866 |
| AluI | AGCT | 3 cut(s) | 651, 817, 866 |
| Alw26I | GTCTC | 2 cut(s) | 301, 796 |
| Ama87I | CYCGRG | 2 cut(s) | 976, 1001 |
| Aor13HI | TCCGGA | 1 cut(s) | 92 |
| AoxI | GGCC | 6 cut(s) | 9, 273, 300, 604, 665, 827 |
| ApeKI | GCWGC | 1 cut(s) | 267 |
| ApoI | RAATTY | 1 cut(s) | 882 |
| AseI | ATTAAT | 1 cut(s) | 530 |
| AspLEI | GCGC | 5 cut(s) | 154, 504, 673, 675, 958 |
| AspS9I | GGNCC | 3 cut(s) | 10, 124, 828 |
| AsuHPI | GGTGA | 3 cut(s) | 35, 500, 748 |
| AsuII | TTCGAA | 3 cut(s) | 57, 316, 820 |
| AvaI | CYCGRG | 2 cut(s) | 976, 1001 |
| AvaII | GGWCC | 1 cut(s) | 124 |
| BanI | GGYRCC | 1 cut(s) | 501 |
| BauI | CACGAG | 1 cut(s) | 512 |
| BbvI | GCAGC | 1 cut(s) | 279 |
| BciVI | GTATCC | 1 cut(s) | 413 |
| BcoDI | GTCTC | 2 cut(s) | 301, 796 |
| BfaI | CTAG | 2 cut(s) | 38, 552 |
| BfmI | CTRYAG | 2 cut(s) | 265, 1010 |
| BfoI | RGCGCY | 1 cut(s) | 505 |
| BfuI | GTATCC | 1 cut(s) | 413 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 354 |
| BisI | GCNGC | 2 cut(s) | 268, 993 |
| BlpI | GCTNAGC | 1 cut(s) | 813 |
| BlsI | GCNGC | 2 cut(s) | 269, 994 |
| Bme18I | GGWCC | 1 cut(s) | 124 |
| BmeT110I | CYCGRG | 2 cut(s) | 976, 1001 |
| BmgBI | CACGTC | 1 cut(s) | 459 |
| BmgT120I | GGNCC | 3 cut(s) | 10, 124, 828 |
| BmiI | GGNNCC | 2 cut(s) | 12, 503 |
| BmsI | GCATC | 2 cut(s) | 249, 387 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 813 |
| Bpu14I | TTCGAA | 3 cut(s) | 57, 316, 820 |
| BsaHI | GRCGYC | 1 cut(s) | 502 |
| BsaJI | CCNNGG | 2 cut(s) | 581, 601 |
| BsaWI | WCCGGW | 1 cut(s) | 92 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 68, 98 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 18, 19, 20, 298 |
| Bse1I | ACTGG | 2 cut(s) | 284, 398 |
| BseAI | TCCGGA | 1 cut(s) | 92 |
| BseDI | CCNNGG | 2 cut(s) | 581, 601 |
| BseGI | GGATG | 1 cut(s) | 402 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 18, 19, 20, 298 |
| BseNI | ACTGG | 2 cut(s) | 284, 398 |
| BsePI | GCGCGC | 1 cut(s) | 671 |
| BseRI | GAGGAG | 1 cut(s) | 590 |
| BseX3I | CGGCCG | 2 cut(s) | 300, 604 |
| BseXI | GCAGC | 1 cut(s) | 279 |
| Bsh1236I | CGCG | 2 cut(s) | 673, 958 |
| Bsh1285I | CGRYCG | 2 cut(s) | 303, 607 |
| BshFI | GGCC | 6 cut(s) | 11, 275, 302, 606, 667, 829 |
| BshNI | GGYRCC | 1 cut(s) | 501 |
| BsiEI | CGRYCG | 2 cut(s) | 303, 607 |
| BsiHKCI | CYCGRG | 2 cut(s) | 976, 1001 |
| BsiSI | CCGG | 1 cut(s) | 93 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 18, 19, 20, 298 |
| BsmAI | GTCTC | 2 cut(s) | 301, 796 |
| BsnI | GGCC | 6 cut(s) | 11, 275, 302, 606, 667, 829 |
| BsoBI | CYCGRG | 2 cut(s) | 976, 1001 |
| Bsp119I | TTCGAA | 3 cut(s) | 57, 316, 820 |
| Bsp13I | TCCGGA | 1 cut(s) | 92 |
| Bsp143I | GATC | 2 cut(s) | 743, 1006 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 813 |
| BspACI | CCGC | 3 cut(s) | 41, 198, 992 |
| BspANI | GGCC | 6 cut(s) | 11, 275, 302, 606, 667, 829 |
| BspEI | TCCGGA | 1 cut(s) | 92 |
| BspFNI | CGCG | 2 cut(s) | 673, 958 |
| BspLI | GGNNCC | 2 cut(s) | 12, 503 |
| BspMAI | CTGCAG | 1 cut(s) | 269 |
| BspT104I | TTCGAA | 3 cut(s) | 57, 316, 820 |
| BspT107I | GGYRCC | 1 cut(s) | 501 |
| BsrI | ACTGG | 2 cut(s) | 284, 398 |
| BssECI | CCNNGG | 2 cut(s) | 581, 601 |
| BssHII | GCGCGC | 1 cut(s) | 671 |
| BssMI | GATC | 2 cut(s) | 743, 1006 |
| BssNI | GRCGYC | 1 cut(s) | 502 |
| BssSI | CACGAG | 1 cut(s) | 512 |
| Bst2BI | CACGAG | 1 cut(s) | 512 |
| Bst4CI | ACNGT | 3 cut(s) | 232, 488, 707 |
| Bst6I | CTCTTC | 2 cut(s) | 734, 897 |
| BstACI | GRCGYC | 1 cut(s) | 502 |
| BstBI | TTCGAA | 3 cut(s) | 57, 316, 820 |
| BstC8I | GCNNGC | 5 cut(s) | 150, 620, 669, 673, 810 |
| BstDEI | CTNAG | 3 cut(s) | 813, 842, 912 |
| BstEII | GGTNACC | 2 cut(s) | 282, 488 |
| BstF5I | GGATG | 1 cut(s) | 402 |
| BstFNI | CGCG | 2 cut(s) | 673, 958 |
| BstH2I | RGCGCY | 1 cut(s) | 505 |
| BstHHI | GCGC | 5 cut(s) | 154, 504, 673, 675, 958 |
| BstKTI | GATC | 2 cut(s) | 746, 1009 |
| BstMAI | GTCTC | 2 cut(s) | 301, 796 |
| BstMBI | GATC | 2 cut(s) | 743, 1006 |
| BstMCI | CGRYCG | 2 cut(s) | 303, 607 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 354, 814 |
| BstNSI | RCATGY | 2 cut(s) | 152, 172 |
| BstPI | GGTNACC | 2 cut(s) | 282, 488 |
| BstSFI | CTRYAG | 2 cut(s) | 265, 1010 |
| BstUI | CGCG | 2 cut(s) | 673, 958 |
| BstV1I | GCAGC | 1 cut(s) | 279 |
| BstX2I | RGATCY | 1 cut(s) | 1006 |
| BstYI | RGATCY | 1 cut(s) | 1006 |
| BstZI | CGGCCG | 2 cut(s) | 300, 604 |
| BsuI | GTATCC | 1 cut(s) | 413 |
| BsuRI | GGCC | 6 cut(s) | 11, 275, 302, 606, 667, 829 |
| BtrI | CACGTC | 1 cut(s) | 459 |
| BtsCI | GGATG | 1 cut(s) | 402 |
| BtsI | GCAGTG | 1 cut(s) | 262 |
| BtsIMutI | CAGTG | 2 cut(s) | 228, 262 |
| Cac8I | GCNNGC | 5 cut(s) | 150, 620, 669, 673, 810 |
| CfoI | GCGC | 5 cut(s) | 154, 504, 673, 675, 958 |
| Cfr13I | GGNCC | 3 cut(s) | 10, 124, 828 |
| CseI | GACGC | 1 cut(s) | 947 |
| Csp6I | GTAC | 2 cut(s) | 391, 627 |
| CviAII | CATG | 5 cut(s) | 110, 149, 169, 870, 891 |
| CviQI | GTAC | 2 cut(s) | 391, 627 |
| DdeI | CTNAG | 3 cut(s) | 813, 842, 912 |
| DinI | GGCGCC | 1 cut(s) | 503 |
| DpnI | GATC | 2 cut(s) | 745, 1008 |
| DpnII | GATC | 2 cut(s) | 743, 1006 |
| DraI | TTTAAA | 1 cut(s) | 439 |
| EaeI | YGGCCR | 2 cut(s) | 300, 604 |
| EagI | CGGCCG | 2 cut(s) | 300, 604 |
| Eam1104I | CTCTTC | 2 cut(s) | 734, 897 |
| EarI | CTCTTC | 2 cut(s) | 734, 897 |
| EciI | GGCGGA | 1 cut(s) | 187 |
| EclXI | CGGCCG | 2 cut(s) | 300, 604 |
| Eco47I | GGWCC | 1 cut(s) | 124 |
| Eco52I | CGGCCG | 2 cut(s) | 300, 604 |
| Eco57I | CTGAAG | 2 cut(s) | 229, 528 |
| Eco88I | CYCGRG | 2 cut(s) | 976, 1001 |
| Eco91I | GGTNACC | 2 cut(s) | 282, 488 |
| EcoO109I | RGGNCCY | 2 cut(s) | 10, 124 |
| EcoO65I | GGTNACC | 2 cut(s) | 282, 488 |
| EgeI | GGCGCC | 1 cut(s) | 503 |
| EheI | GGCGCC | 1 cut(s) | 503 |
| FaeI | CATG | 5 cut(s) | 113, 152, 172, 873, 894 |
| FatI | CATG | 5 cut(s) | 109, 148, 168, 869, 890 |
| FauI | CCCGC | 1 cut(s) | 34 |
| Fnu4HI | GCNGC | 2 cut(s) | 268, 993 |
| FokI | GGATG | 1 cut(s) | 409 |
| Fsp4HI | GCNGC | 2 cut(s) | 268, 993 |
| FspBI | CTAG | 2 cut(s) | 38, 552 |
| FspI | TGCGCA | 1 cut(s) | 153 |
| GlaI | GCGC | 5 cut(s) | 153, 503, 672, 674, 957 |
| GluI | GCNGC | 2 cut(s) | 268, 993 |
| HaeII | RGCGCY | 1 cut(s) | 505 |
| HaeIII | GGCC | 6 cut(s) | 11, 275, 302, 606, 667, 829 |
| HapII | CCGG | 1 cut(s) | 93 |
| HgaI | GACGC | 1 cut(s) | 947 |
| HhaI | GCGC | 5 cut(s) | 154, 504, 673, 675, 958 |
| Hin1I | GRCGYC | 1 cut(s) | 502 |
| Hin1II | CATG | 5 cut(s) | 113, 152, 172, 873, 894 |
| Hin6I | GCGC | 5 cut(s) | 152, 502, 671, 673, 956 |
| HinP1I | GCGC | 5 cut(s) | 152, 502, 671, 673, 956 |
| HincII | GTYRAC | 1 cut(s) | 703 |
| HindII | GTYRAC | 1 cut(s) | 703 |
| HindIII | AAGCTT | 1 cut(s) | 815 |
| HinfI | GANTC | 8 cut(s) | 65, 318, 452, 495, 510, 699, 969, 974 |
| HpaII | CCGG | 1 cut(s) | 93 |
| HphI | GGTGA | 3 cut(s) | 35, 500, 748 |
| Hpy166II | GTNNAC | 3 cut(s) | 517, 703, 764 |
| Hpy188I | TCNGA | 1 cut(s) | 70 |
| Hpy188III | TCNNGA | 4 cut(s) | 93, 514, 552, 978 |
| Hpy8I | GTNNAC | 3 cut(s) | 517, 703, 764 |
| Hpy99I | CGWCG | 4 cut(s) | 391, 460, 510, 612 |
| HpyAV | CCTTC | 4 cut(s) | 137, 219, 359, 631 |
| HpyCH4III | ACNGT | 3 cut(s) | 232, 488, 707 |
| HpyCH4IV | ACGT | 3 cut(s) | 389, 458, 642 |
| HpyCH4V | TGCA | 4 cut(s) | 113, 148, 267, 589 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 354, 814 |
| HpyF3I | CTNAG | 3 cut(s) | 813, 842, 912 |
| HpySE526I | ACGT | 3 cut(s) | 389, 458, 642 |
| Hsp92I | GRCGYC | 1 cut(s) | 502 |
| Hsp92II | CATG | 5 cut(s) | 113, 152, 172, 873, 894 |
| HspAI | GCGC | 5 cut(s) | 152, 502, 671, 673, 956 |
| KasI | GGCGCC | 1 cut(s) | 501 |
| Kpn2I | TCCGGA | 1 cut(s) | 92 |
| Kzo9I | GATC | 2 cut(s) | 743, 1006 |
| LpnPI | CCDG | 7 cut(s) | 106, 265, 379, 429, 484, 531, 681 |
| Lsp1109I | GCAGC | 1 cut(s) | 279 |
| LweI | GCATC | 2 cut(s) | 249, 387 |
| MaeI | CTAG | 2 cut(s) | 38, 552 |
| MaeII | ACGT | 3 cut(s) | 389, 458, 642 |
| MaeIII | GTNAC | 7 cut(s) | 282, 368, 375, 488, 658, 707, 775 |
| MalI | GATC | 2 cut(s) | 745, 1008 |
| MboI | GATC | 2 cut(s) | 743, 1006 |
| MboII | GAAGA | 4 cut(s) | 235, 534, 751, 914 |
| MfeI | CAATTG | 1 cut(s) | 143 |
| MflI | RGATCY | 1 cut(s) | 1006 |
| MluCI | AATT | 9 cut(s) | 131, 143, 213, 527, 690, 720, 882, 924, 946 |
| Mly113I | GGCGCC | 1 cut(s) | 502 |
| MlyI | GAGTC | 4 cut(s) | 74, 504, 708, 968 |
| MnlI | CCTC | 9 cut(s) | 115, 170, 265, 326, 591, 611, 898, 941, 997 |
| MroI | TCCGGA | 1 cut(s) | 92 |
| MseI | TTAA | 4 cut(s) | 438, 530, 923, 927 |
| MspI | CCGG | 1 cut(s) | 93 |
| MunI | CAATTG | 1 cut(s) | 143 |
| MvnI | CGCG | 2 cut(s) | 673, 958 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 354, 814 |
| NarI | GGCGCC | 1 cut(s) | 502 |
| NdeII | GATC | 2 cut(s) | 743, 1006 |
| NlaIII | CATG | 5 cut(s) | 113, 152, 172, 873, 894 |
| NlaIV | GGNNCC | 2 cut(s) | 12, 503 |
| NmeAIII | GCCGAG | 4 cut(s) | 278, 426, 582, 643 |
| NmuCI | GTSAC | 1 cut(s) | 488 |
| NsbI | TGCGCA | 1 cut(s) | 153 |
| NspI | RCATGY | 2 cut(s) | 152, 172 |
| NspV | TTCGAA | 3 cut(s) | 57, 316, 820 |
| PacI | TTAATTAA | 1 cut(s) | 927 |
| PaeI | GCATGC | 1 cut(s) | 152 |
| PaeR7I | CTCGAG | 2 cut(s) | 976, 1001 |
| PauI | GCGCGC | 1 cut(s) | 671 |
| PciI | ACATGT | 1 cut(s) | 168 |
| PfeI | GAWTC | 4 cut(s) | 318, 452, 495, 969 |
| PkrI | GCNGC | 2 cut(s) | 269, 994 |
| PleI | GAGTC | 4 cut(s) | 73, 504, 707, 968 |
| PluTI | GGCGCC | 1 cut(s) | 505 |
| PpsI | GAGTC | 4 cut(s) | 73, 504, 707, 968 |
| PpuMI | RGGWCCY | 1 cut(s) | 124 |
| PscI | ACATGT | 1 cut(s) | 168 |
| PshBI | ATTAAT | 1 cut(s) | 530 |
| Psp5II | RGGWCCY | 1 cut(s) | 124 |
| PspEI | GGTNACC | 2 cut(s) | 282, 488 |
| PspN4I | GGNNCC | 2 cut(s) | 12, 503 |
| PspPI | GGNCC | 3 cut(s) | 10, 124, 828 |
| PspPPI | RGGWCCY | 1 cut(s) | 124 |
| PspXI | VCTCGAGB | 1 cut(s) | 1001 |
| PstI | CTGCAG | 1 cut(s) | 269 |
| PsuI | RGATCY | 1 cut(s) | 1006 |
| PteI | GCGCGC | 1 cut(s) | 671 |
| RsaI | GTAC | 2 cut(s) | 392, 628 |
| RsaNI | GTAC | 2 cut(s) | 391, 627 |
| SaqAI | TTAA | 4 cut(s) | 438, 530, 923, 927 |
| SatI | GCNGC | 2 cut(s) | 268, 993 |
| Sau3AI | GATC | 2 cut(s) | 743, 1006 |
| Sau96I | GGNCC | 3 cut(s) | 10, 124, 828 |
| SchI | GAGTC | 4 cut(s) | 74, 504, 708, 968 |
| SfaNI | GCATC | 2 cut(s) | 249, 387 |
| SfcI | CTRYAG | 2 cut(s) | 265, 1010 |
| SfoI | GGCGCC | 1 cut(s) | 503 |
| Sfr274I | CTCGAG | 2 cut(s) | 976, 1001 |
| SfuI | TTCGAA | 3 cut(s) | 57, 316, 820 |
| SinI | GGWCC | 1 cut(s) | 124 |
| SlaI | CTCGAG | 2 cut(s) | 976, 1001 |
| SmlI | CTYRAG | 2 cut(s) | 976, 1001 |
| SmoI | CTYRAG | 2 cut(s) | 976, 1001 |
| SphI | GCATGC | 1 cut(s) | 152 |
| Sse9I | AATT | 9 cut(s) | 131, 143, 213, 527, 690, 720, 882, 924, 946 |
| SsiI | CCGC | 3 cut(s) | 41, 198, 992 |
| SspDI | GGCGCC | 1 cut(s) | 501 |
| SspMI | CTAG | 2 cut(s) | 38, 552 |
| TaaI | ACNGT | 3 cut(s) | 232, 488, 707 |
| TaiI | ACGT | 3 cut(s) | 392, 461, 645 |
| TaqII | GACCGA | 2 cut(s) | 507, 580 |
| TasI | AATT | 9 cut(s) | 131, 143, 213, 527, 690, 720, 882, 924, 946 |
| TauI | GCSGC | 1 cut(s) | 995 |
| TfiI | GAWTC | 4 cut(s) | 318, 452, 495, 969 |
| Tru1I | TTAA | 4 cut(s) | 438, 530, 923, 927 |
| Tru9I | TTAA | 4 cut(s) | 438, 530, 923, 927 |
| TscAI | CASTG | 2 cut(s) | 235, 269 |
| TseFI | GTSAC | 1 cut(s) | 488 |
| TseI | GCWGC | 1 cut(s) | 267 |
| Tsp45I | GTSAC | 1 cut(s) | 488 |
| TspDTI | ATGAA | 2 cut(s) | 17, 858 |
| TspGWI | ACGGA | 2 cut(s) | 649, 781 |
| TspRI | CASTG | 2 cut(s) | 235, 269 |
| VpaK11BI | GGWCC | 1 cut(s) | 124 |
| VspI | ATTAAT | 1 cut(s) | 530 |
| XapI | RAATTY | 1 cut(s) | 882 |
| XbaI | TCTAGA | 1 cut(s) | 551 |
| XceI | RCATGY | 2 cut(s) | 152, 172 |
| XhoI | CTCGAG | 2 cut(s) | 976, 1001 |
| XspI | CTAG | 2 cut(s) | 38, 552 |