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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 776, 1184, 2519 |
| Acc16I | TGCGCA | 1 cut(s) | 589 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2415 |
| AccI | GTMKAC | 3 cut(s) | 28, 371, 902 |
| AccIII | TCCGGA | 2 cut(s) | 108, 290 |
| AciI | CCGC | 2 cut(s) | 1124, 2639 |
| AcsI | RAATTY | 8 cut(s) | 86, 338, 625, 680, 1108, 1909, 2040, 2379 |
| AcuI | CTGAAG | 1 cut(s) | 2343 |
| AfaI | GTAC | 4 cut(s) | 392, 410, 1757, 2262 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1574, 1829, 2011, 2415 |
| AflII | CTTAAG | 1 cut(s) | 362 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2112 |
| AhlI | ACTAGT | 1 cut(s) | 1742 |
| AjnI | CCWGG | 2 cut(s) | 907, 1567 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2521, 2553 |
| AleI | CACNNNNGTG | 1 cut(s) | 1118 |
| AluBI | AGCT | 8 cut(s) | 662, 816, 1216, 1253, 1675, 1785, 1892, 2240 |
| AluI | AGCT | 8 cut(s) | 662, 816, 1216, 1253, 1675, 1785, 1892, 2240 |
| Ama87I | CYCGRG | 3 cut(s) | 1573, 2109, 2160 |
| Aor13HI | TCCGGA | 2 cut(s) | 108, 290 |
| AoxI | GGCC | 2 cut(s) | 242, 2362 |
| ApeKI | GCWGC | 2 cut(s) | 1100, 1701 |
| ApoI | RAATTY | 8 cut(s) | 86, 338, 625, 680, 1108, 1909, 2040, 2379 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 10, 42, 1974, 2006 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 455 |
| AspLEI | GCGC | 2 cut(s) | 181, 590 |
| AspS9I | GGNCC | 5 cut(s) | 242, 288, 330, 1156, 2636 |
| AsuHPI | GGTGA | 7 cut(s) | 89, 494, 1676, 2026, 2235, 2494, 2605 |
| AsuII | TTCGAA | 3 cut(s) | 656, 1455, 1721 |
| AvaI | CYCGRG | 3 cut(s) | 1573, 2109, 2160 |
| AvaII | GGWCC | 4 cut(s) | 288, 330, 1156, 2636 |
| AxyI | CCTNAGG | 1 cut(s) | 2290 |
| BamHI | GGATCC | 3 cut(s) | 194, 219, 310 |
| BbsI | GAAGAC | 2 cut(s) | 111, 1984 |
| BbvI | GCAGC | 2 cut(s) | 1087, 1713 |
| BccI | CCATC | 4 cut(s) | 88, 1367, 1440, 1847 |
| BceAI | ACGGC | 2 cut(s) | 229, 252 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1082, 1116 |
| BciT130I | CCWGG | 2 cut(s) | 909, 1569 |
| BciVI | GTATCC | 1 cut(s) | 2163 |
| BclI | TGATCA | 2 cut(s) | 301, 1041 |
| BcuI | ACTAGT | 1 cut(s) | 1742 |
| BfaI | CTAG | 3 cut(s) | 737, 1608, 1743 |
| BfrI | CTTAAG | 1 cut(s) | 362 |
| BfuI | GTATCC | 1 cut(s) | 2163 |
| BglII | AGATCT | 1 cut(s) | 2018 |
| BisI | GCNGC | 2 cut(s) | 1101, 1702 |
| BlsI | GCNGC | 2 cut(s) | 1102, 1703 |
| Bme1390I | CCNGG | 2 cut(s) | 909, 1569 |
| Bme18I | GGWCC | 4 cut(s) | 288, 330, 1156, 2636 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2112 |
| BmeT110I | CYCGRG | 3 cut(s) | 1573, 2109, 2160 |
| BmgT120I | GGNCC | 5 cut(s) | 242, 288, 330, 1156, 2636 |
| BmiI | GGNNCC | 4 cut(s) | 196, 221, 312, 332 |
| BmrFI | CCNGG | 2 cut(s) | 909, 1569 |
| BmrI | ACTGGG | 1 cut(s) | 921 |
| BmsI | GCATC | 4 cut(s) | 1026, 1087, 2242, 2332 |
| BmuI | ACTGGG | 1 cut(s) | 921 |
| BpiI | GAAGAC | 2 cut(s) | 111, 1984 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2154, 2186, 2471, 2503 |
| BpmI | CTGGAG | 1 cut(s) | 621 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1735 |
| Bpu14I | TTCGAA | 3 cut(s) | 656, 1455, 1721 |
| BpuEI | CTTGAG | 2 cut(s) | 809, 1052 |
| Bsa29I | ATCGAT | 1 cut(s) | 2326 |
| BsaAI | YACGTR | 2 cut(s) | 390, 464 |
| BsaJI | CCNNGG | 2 cut(s) | 1068, 1386 |
| BsaWI | WCCGGW | 2 cut(s) | 108, 290 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 594, 624, 2446, 2476 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1574, 1829, 2011, 2415 |
| Bse1I | ACTGG | 2 cut(s) | 927, 1144 |
| Bse21I | CCTNAGG | 1 cut(s) | 2290 |
| BseAI | TCCGGA | 2 cut(s) | 108, 290 |
| BseBI | CCWGG | 2 cut(s) | 909, 1569 |
| BseCI | ATCGAT | 1 cut(s) | 2326 |
| BseDI | CCNNGG | 2 cut(s) | 1068, 1386 |
| BseGI | GGATG | 6 cut(s) | 138, 866, 1243, 1976, 2001, 2122 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1574, 1829, 2011, 2415 |
| BseMII | CTCAG | 2 cut(s) | 195, 1234 |
| BseNI | ACTGG | 2 cut(s) | 927, 1144 |
| BseRI | GAGGAG | 3 cut(s) | 618, 1208, 1929 |
| BseXI | GCAGC | 2 cut(s) | 1087, 1713 |
| BshFI | GGCC | 2 cut(s) | 244, 2364 |
| BshVI | ATCGAT | 1 cut(s) | 2326 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1573, 2109, 2160 |
| BsiSI | CCGG | 2 cut(s) | 109, 291 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1574, 1829, 2011, 2415 |
| BsmI | GAATGC | 1 cut(s) | 1004 |
| BsnI | GGCC | 2 cut(s) | 244, 2364 |
| BsoBI | CYCGRG | 3 cut(s) | 1573, 2109, 2160 |
| Bsp119I | TTCGAA | 3 cut(s) | 656, 1455, 1721 |
| Bsp13I | TCCGGA | 2 cut(s) | 108, 290 |
| Bsp1407I | TGTACA | 1 cut(s) | 408 |
| BspACI | CCGC | 2 cut(s) | 1124, 2639 |
| BspANI | GGCC | 2 cut(s) | 244, 2364 |
| BspCNI | CTCAG | 2 cut(s) | 196, 1233 |
| BspDI | ATCGAT | 1 cut(s) | 2326 |
| BspEI | TCCGGA | 2 cut(s) | 108, 290 |
| BspLI | GGNNCC | 4 cut(s) | 196, 221, 312, 332 |
| BspT104I | TTCGAA | 3 cut(s) | 656, 1455, 1721 |
| BspTI | CTTAAG | 1 cut(s) | 362 |
| BsrGI | TGTACA | 1 cut(s) | 408 |
| BsrI | ACTGG | 2 cut(s) | 927, 1144 |
| BssECI | CCNNGG | 2 cut(s) | 1068, 1386 |
| BssNAI | GTATAC | 1 cut(s) | 372 |
| BssT1I | CCWWGG | 2 cut(s) | 1068, 1386 |
| Bst1107I | GTATAC | 1 cut(s) | 372 |
| Bst2UI | CCWGG | 2 cut(s) | 909, 1569 |
| Bst4CI | ACNGT | 3 cut(s) | 288, 1192, 1277 |
| Bst6I | CTCTTC | 4 cut(s) | 184, 205, 321, 2177 |
| BstAFI | CTTAAG | 1 cut(s) | 362 |
| BstAUI | TGTACA | 1 cut(s) | 408 |
| BstBAI | YACGTR | 2 cut(s) | 390, 464 |
| BstBI | TTCGAA | 3 cut(s) | 656, 1455, 1721 |
| BstC8I | GCNNGC | 3 cut(s) | 814, 1086, 2653 |
| BstDEI | CTNAG | 4 cut(s) | 204, 1220, 1735, 2290 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2009 |
| BstF5I | GGATG | 6 cut(s) | 138, 866, 1243, 1976, 2001, 2122 |
| BstHHI | GCGC | 2 cut(s) | 181, 590 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1578 |
| BstNI | CCWGG | 2 cut(s) | 909, 1569 |
| BstNSI | RCATGY | 4 cut(s) | 594, 1088, 2340, 2655 |
| BstSCI | CCNGG | 2 cut(s) | 907, 1567 |
| BstV1I | GCAGC | 2 cut(s) | 1087, 1713 |
| BstV2I | GAAGAC | 2 cut(s) | 111, 1984 |
| BstX2I | RGATCY | 5 cut(s) | 194, 219, 310, 1354, 2018 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1120, 1987 |
| BstYI | RGATCY | 5 cut(s) | 194, 219, 310, 1354, 2018 |
| BstZ17I | GTATAC | 1 cut(s) | 372 |
| Bsu15I | ATCGAT | 1 cut(s) | 2326 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2290 |
| BsuI | GTATCC | 1 cut(s) | 2163 |
| BsuRI | GGCC | 2 cut(s) | 244, 2364 |
| BsuTUI | ATCGAT | 1 cut(s) | 2326 |
| BtsCI | GGATG | 6 cut(s) | 138, 866, 1243, 1976, 2001, 2122 |
| BtsI | GCAGTG | 1 cut(s) | 2352 |
| BtsIMutI | CAGTG | 2 cut(s) | 1282, 2352 |
| Cac8I | GCNNGC | 3 cut(s) | 814, 1086, 2653 |
| CfoI | GCGC | 2 cut(s) | 181, 590 |
| Cfr13I | GGNCC | 5 cut(s) | 242, 288, 330, 1156, 2636 |
| ClaI | ATCGAT | 1 cut(s) | 2326 |
| CpoI | CGGWCCG | 1 cut(s) | 288 |
| Csp6I | GTAC | 4 cut(s) | 391, 409, 1756, 2261 |
| CspI | CGGWCCG | 1 cut(s) | 288 |
| CviQI | GTAC | 4 cut(s) | 391, 409, 1756, 2261 |
| DdeI | CTNAG | 4 cut(s) | 204, 1220, 1735, 2290 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2112 |
| Eam1104I | CTCTTC | 4 cut(s) | 184, 205, 321, 2177 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2112 |
| EarI | CTCTTC | 4 cut(s) | 184, 205, 321, 2177 |
| EciI | GGCGGA | 1 cut(s) | 1139 |
| Eco130I | CCWWGG | 2 cut(s) | 1068, 1386 |
| Eco147I | AGGCCT | 1 cut(s) | 2364 |
| Eco32I | GATATC | 1 cut(s) | 2167 |
| Eco47I | GGWCC | 4 cut(s) | 288, 330, 1156, 2636 |
| Eco57I | CTGAAG | 1 cut(s) | 2343 |
| Eco81I | CCTNAGG | 1 cut(s) | 2290 |
| Eco88I | CYCGRG | 3 cut(s) | 1573, 2109, 2160 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2009 |
| EcoO109I | RGGNCCY | 1 cut(s) | 330 |
| EcoRI | GAATTC | 4 cut(s) | 86, 680, 1108, 2040 |
| EcoRII | CCWGG | 2 cut(s) | 907, 1567 |
| EcoRV | GATATC | 1 cut(s) | 2167 |
| EcoT14I | CCWWGG | 2 cut(s) | 1068, 1386 |
| EcoT22I | ATGCAT | 2 cut(s) | 1019, 2342 |
| ErhI | CCWWGG | 2 cut(s) | 1068, 1386 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 345, 377 |
| FbaI | TGATCA | 2 cut(s) | 301, 1041 |
| FblI | GTMKAC | 3 cut(s) | 28, 371, 902 |
| Fnu4HI | GCNGC | 2 cut(s) | 1101, 1702 |
| FokI | GGATG | 6 cut(s) | 125, 853, 1230, 1963, 1988, 2109 |
| Fsp4HI | GCNGC | 2 cut(s) | 1101, 1702 |
| FspBI | CTAG | 3 cut(s) | 737, 1608, 1743 |
| FspI | TGCGCA | 1 cut(s) | 589 |
| GlaI | GCGC | 2 cut(s) | 180, 589 |
| GluI | GCNGC | 2 cut(s) | 1101, 1702 |
| GsuI | CTGGAG | 1 cut(s) | 621 |
| HaeIII | GGCC | 2 cut(s) | 244, 2364 |
| HapII | CCGG | 2 cut(s) | 109, 291 |
| HhaI | GCGC | 2 cut(s) | 181, 590 |
| Hin6I | GCGC | 2 cut(s) | 179, 588 |
| HinP1I | GCGC | 2 cut(s) | 179, 588 |
| HincII | GTYRAC | 1 cut(s) | 1344 |
| HindII | GTYRAC | 1 cut(s) | 1344 |
| HindIII | AAGCTT | 2 cut(s) | 814, 1251 |
| HpaII | CCGG | 2 cut(s) | 109, 291 |
| HphI | GGTGA | 7 cut(s) | 89, 494, 1676, 2026, 2235, 2494, 2605 |
| Hpy166II | GTNNAC | 9 cut(s) | 29, 372, 670, 903, 932, 1273, 1344, 2470, 2485 |
| Hpy188I | TCNGA | 6 cut(s) | 205, 492, 501, 1364, 1947, 2106 |
| Hpy8I | GTNNAC | 9 cut(s) | 29, 372, 670, 903, 932, 1273, 1344, 2470, 2485 |
| HpyAV | CCTTC | 5 cut(s) | 416, 969, 1241, 1604, 2548 |
| HpyCH4III | ACNGT | 3 cut(s) | 288, 1192, 1277 |
| HpyCH4IV | ACGT | 4 cut(s) | 368, 389, 463, 794 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1578 |
| HpyF3I | CTNAG | 4 cut(s) | 204, 1220, 1735, 2290 |
| HpySE526I | ACGT | 4 cut(s) | 368, 389, 463, 794 |
| HspAI | GCGC | 2 cut(s) | 179, 588 |
| Kpn2I | TCCGGA | 2 cut(s) | 108, 290 |
| Ksp22I | TGATCA | 2 cut(s) | 301, 1041 |
| LmnI | GCTCC | 2 cut(s) | 1221, 1578 |
| Lsp1109I | GCAGC | 2 cut(s) | 1087, 1713 |
| LweI | GCATC | 4 cut(s) | 1026, 1087, 2242, 2332 |
| MaeI | CTAG | 3 cut(s) | 737, 1608, 1743 |
| MaeII | ACGT | 4 cut(s) | 368, 389, 463, 794 |
| MaeIII | GTNAC | 6 cut(s) | 1005, 1072, 1132, 1192, 2054, 2114 |
| MfeI | CAATTG | 1 cut(s) | 1812 |
| MflI | RGATCY | 5 cut(s) | 194, 219, 310, 1354, 2018 |
| MlyI | GAGTC | 5 cut(s) | 838, 1286, 1419, 1545, 2101 |
| MmeI | TCCRAC | 1 cut(s) | 251 |
| Mph1103I | ATGCAT | 2 cut(s) | 1019, 2342 |
| MroI | TCCGGA | 2 cut(s) | 108, 290 |
| MroXI | GAANNNNTTC | 1 cut(s) | 455 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1118, 1586, 2268 |
| MspCI | CTTAAG | 1 cut(s) | 362 |
| MspI | CCGG | 2 cut(s) | 109, 291 |
| MspR9I | CCNGG | 2 cut(s) | 909, 1569 |
| MunI | CAATTG | 1 cut(s) | 1812 |
| Mva1269I | GAATGC | 1 cut(s) | 1004 |
| MvaI | CCWGG | 2 cut(s) | 909, 1569 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1578 |
| NlaIV | GGNNCC | 4 cut(s) | 196, 221, 312, 332 |
| NmuCI | GTSAC | 3 cut(s) | 1192, 2054, 2114 |
| NsbI | TGCGCA | 1 cut(s) | 589 |
| NsiI | ATGCAT | 2 cut(s) | 1019, 2342 |
| NspI | RCATGY | 4 cut(s) | 594, 1088, 2340, 2655 |
| NspV | TTCGAA | 3 cut(s) | 656, 1455, 1721 |
| OliI | CACNNNNGTG | 1 cut(s) | 1118 |
| PaeI | GCATGC | 2 cut(s) | 1088, 2655 |
| PaeR7I | CTCGAG | 1 cut(s) | 2160 |
| PceI | AGGCCT | 1 cut(s) | 2364 |
| PctI | GAATGC | 1 cut(s) | 1004 |
| PdmI | GAANNNNTTC | 1 cut(s) | 455 |
| PfeI | GAWTC | 6 cut(s) | 1026, 1529, 2074, 2328, 2401, 2423 |
| PflFI | GACNNNGTC | 2 cut(s) | 115, 793 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2415 |
| PfoI | TCCNGGA | 1 cut(s) | 907 |
| PkrI | GCNGC | 2 cut(s) | 1102, 1703 |
| PleI | GAGTC | 5 cut(s) | 838, 1286, 1418, 1545, 2101 |
| PpsI | GAGTC | 5 cut(s) | 838, 1286, 1418, 1545, 2101 |
| Ppu21I | YACGTR | 2 cut(s) | 390, 464 |
| PpuMI | RGGWCCY | 1 cut(s) | 330 |
| PsiI | TTATAA | 3 cut(s) | 776, 1184, 2519 |
| Psp5II | RGGWCCY | 1 cut(s) | 330 |
| Psp6I | CCWGG | 2 cut(s) | 907, 1567 |
| PspGI | CCWGG | 2 cut(s) | 907, 1567 |
| PspN4I | GGNNCC | 4 cut(s) | 196, 221, 312, 332 |
| PspPI | GGNCC | 5 cut(s) | 242, 288, 330, 1156, 2636 |
| PspPPI | RGGWCCY | 1 cut(s) | 330 |
| PsuI | RGATCY | 5 cut(s) | 194, 219, 310, 1354, 2018 |
| PsyI | GACNNNGTC | 2 cut(s) | 115, 793 |
| RsaI | GTAC | 4 cut(s) | 392, 410, 1757, 2262 |
| RsaNI | GTAC | 4 cut(s) | 391, 409, 1756, 2261 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1118, 1586, 2268 |
| Rsr2I | CGGWCCG | 1 cut(s) | 288 |
| RsrII | CGGWCCG | 1 cut(s) | 288 |
| SatI | GCNGC | 2 cut(s) | 1101, 1702 |
| Sau96I | GGNCC | 5 cut(s) | 242, 288, 330, 1156, 2636 |
| SchI | GAGTC | 5 cut(s) | 838, 1286, 1419, 1545, 2101 |
| ScrFI | CCNGG | 2 cut(s) | 909, 1569 |
| SfaNI | GCATC | 4 cut(s) | 1026, 1087, 2242, 2332 |
| Sfr274I | CTCGAG | 1 cut(s) | 2160 |
| SfuI | TTCGAA | 3 cut(s) | 656, 1455, 1721 |
| SinI | GGWCC | 4 cut(s) | 288, 330, 1156, 2636 |
| SlaI | CTCGAG | 1 cut(s) | 2160 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1118, 1586, 2268 |
| SmlI | CTYRAG | 4 cut(s) | 362, 824, 1031, 2160 |
| SmoI | CTYRAG | 4 cut(s) | 362, 824, 1031, 2160 |
| SpeI | ACTAGT | 1 cut(s) | 1742 |
| SphI | GCATGC | 2 cut(s) | 1088, 2655 |
| SseBI | AGGCCT | 1 cut(s) | 2364 |
| SsiI | CCGC | 2 cut(s) | 1124, 2639 |
| SspMI | CTAG | 3 cut(s) | 737, 1608, 1743 |
| StuI | AGGCCT | 1 cut(s) | 2364 |
| StyD4I | CCNGG | 2 cut(s) | 907, 1567 |
| StyI | CCWWGG | 2 cut(s) | 1068, 1386 |
| TaaI | ACNGT | 3 cut(s) | 288, 1192, 1277 |
| TaiI | ACGT | 4 cut(s) | 371, 392, 466, 797 |
| TatI | WGTACW | 2 cut(s) | 408, 1755 |
| TfiI | GAWTC | 6 cut(s) | 1026, 1529, 2074, 2328, 2401, 2423 |
| TscAI | CASTG | 2 cut(s) | 1282, 2359 |
| TseFI | GTSAC | 3 cut(s) | 1192, 2054, 2114 |
| TseI | GCWGC | 2 cut(s) | 1100, 1701 |
| Tsp45I | GTSAC | 3 cut(s) | 1192, 2054, 2114 |
| TspGWI | ACGGA | 3 cut(s) | 309, 509, 1190 |
| TspRI | CASTG | 2 cut(s) | 1282, 2359 |
| Tth111I | GACNNNGTC | 2 cut(s) | 115, 793 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2415 |
| Vha464I | CTTAAG | 1 cut(s) | 362 |
| VpaK11BI | GGWCC | 4 cut(s) | 288, 330, 1156, 2636 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2009 |
| XapI | RAATTY | 8 cut(s) | 86, 338, 625, 680, 1108, 1909, 2040, 2379 |
| XceI | RCATGY | 4 cut(s) | 594, 1088, 2340, 2655 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 267 |
| XhoI | CTCGAG | 1 cut(s) | 2160 |
| XmiI | GTMKAC | 3 cut(s) | 28, 371, 902 |
| XmnI | GAANNNNTTC | 1 cut(s) | 455 |
| XspI | CTAG | 3 cut(s) | 737, 1608, 1743 |
| Zsp2I | ATGCAT | 2 cut(s) | 1019, 2342 |