pycom17g16960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000158
Physical Location & Seq
Forward (+)
14882590 .. 14883711
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g16960.4

Sequence Viewer

Length: 846 bp
ATGGTGGTGGTGGCATCCAAAAAATCCACCGGAGTTGGCCGGAATCGGCCTTGGAAGATGGTCTCGCGGTGGTGCGGGTATGGGTGCACGGGAAGTTTTTTTTTTTTTTTTTTTTTTGATTGGCTGCAAGCTTCACTCTTATTTTCTAATTGGTTCCTTAATCCGGACTCGCAAACGGATTTCGCCTATACGTTCGTACCAAAGAGTACTACGAGGATATGCTTAAAGAATAAGTCCCACATCTCTCAAGTCGATGGTCAACGGAAGTCAAAGTCCTTGCCTCTAGGGCAATTTCCCGGGCTTGACTCCACCGTAGAACGATATTGTCCACTTTGGGCCCTGACCATGCCCTCACGGTTTTCCTGGGATTGCTCTCATGCGAACTCGCTTAACTTCGGAGTTCCTACGAAACCCGAAGCCAGTGAGCTCCCAAAAGGCCTCGTGCTAGGTAGAGATGGAAATATACATATAAGGCTTACAAGATCCACTTTCCTGGGCGATGTGGGATGTTACAATCCCCCCTTGAGGGGTCTGACGTCCTCGTCAACACAAATCCGGCCAAGGATTGGCTCTGATACCAAATTGTCACATCCCGGGCTTGACTCCACCATAACACGATATTGTCTGCTTGAGGCCCCGACCATACCCTCATGGTTTTGTTACTGGGAACTCACACGAGAACTTCCAAGTGGGTCACCCATCCTGGGATTGCTCTCGCGTGAACTCACATATAAGGATTACATGATCCACTCCCCTGGGCGACTCCCTAGCATGAAAATCGAGACATTACGAACCATCGTCGCTTATAACAATGATCAAATCACATCTCAAAGTTATTATCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

282

Amino Acids

31.84

Weight (kDa)

9.43

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 807
AasI GACNNNNNNGTC 1 cut(s) 541
AatII GACGTC 1 cut(s) 539
AccB7I CCANNNNNTGG 1 cut(s) 566
AccII CGCG 2 cut(s) 67, 718
AccIII TCCGGA 1 cut(s) 163
AciI CCGC 2 cut(s) 67, 75
AclWI GGATC 2 cut(s) 477, 739
AcoI YGGCCR 2 cut(s) 37, 557
AcyI GRCGYC 1 cut(s) 536
AfaI GTAC 2 cut(s) 198, 208
AfiI CCNNNNNNNGG 6 cut(s) 163, 525, 526, 527, 566, 704
AjnI CCWGG 4 cut(s) 362, 492, 702, 754
AluBI AGCT 2 cut(s) 131, 427
AluI AGCT 2 cut(s) 131, 427
Alw21I GWGCWC 2 cut(s) 89, 429
Alw26I GTCTC 2 cut(s) 67, 776
Alw44I GTGCAC 1 cut(s) 85
AlwI GGATC 2 cut(s) 477, 739
Ama87I CYCGRG 2 cut(s) 296, 593
Aor13HI TCCGGA 1 cut(s) 163
AoxI GGCC 6 cut(s) 37, 47, 336, 436, 557, 633
ApaI GGGCCC 1 cut(s) 340
ApaLI GTGCAC 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 124
AspS9I GGNCC 3 cut(s) 336, 337, 634
AsuC2I CCSGG 4 cut(s) 297, 298, 594, 595
AsuHPI GGTGA 1 cut(s) 687
AvaI CYCGRG 2 cut(s) 296, 593
BaeGI GKGCMC 2 cut(s) 89, 340
BaeI ACNNNNGTAYC 2 cut(s) 180, 213
BanII GRGCYC 2 cut(s) 340, 429
BauI CACGAG 2 cut(s) 440, 675
Bbv12I GWGCWC 2 cut(s) 89, 429
BbvI GCAGC 1 cut(s) 111
BccI CCATC 5 cut(s) 52, 248, 449, 707, 803
BcgI CGANNNNNNTGC 2 cut(s) 760, 794
BciT130I CCWGG 4 cut(s) 364, 494, 704, 756
BclI TGATCA 1 cut(s) 814
BcnI CCSGG 4 cut(s) 297, 298, 594, 595
BcoDI GTCTC 2 cut(s) 67, 776
BfaI CTAG 3 cut(s) 284, 446, 768
BglI GCCNNNNNGGC 1 cut(s) 286
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
BmcAI AGTACT 1 cut(s) 208
Bme1390I CCNGG 8 cut(s) 297, 298, 364, 494, 594, 595, 704, 756
BmeT110I CYCGRG 2 cut(s) 296, 593
BmgT120I GGNCC 3 cut(s) 336, 337, 634
BmiI GGNNCC 3 cut(s) 155, 338, 636
BmrFI CCNGG 8 cut(s) 297, 298, 364, 494, 594, 595, 704, 756
BmrI ACTGGG 1 cut(s) 673
BmsI GCATC 1 cut(s) 23
BmuI ACTGGG 1 cut(s) 673
BpuEI CTTGAG 3 cut(s) 231, 544, 650
BpuMI CCSGG 4 cut(s) 297, 298, 594, 595
Bsa29I ATCGAT 1 cut(s) 841
BsaHI GRCGYC 1 cut(s) 536
BsaI GGTCTC 1 cut(s) 67
BsaJI CCNNGG 9 cut(s) 50, 296, 363, 493, 560, 593, 703, 754, 755
BsaWI WCCGGW 2 cut(s) 29, 163
Bsc4I CCNNNNNNNGG 6 cut(s) 163, 525, 526, 527, 566, 704
Bse1I ACTGG 2 cut(s) 420, 668
BseAI TCCGGA 1 cut(s) 163
BseBI CCWGG 4 cut(s) 364, 494, 704, 756
BseCI ATCGAT 1 cut(s) 841
BseDI CCNNGG 9 cut(s) 50, 296, 363, 493, 560, 593, 703, 754, 755
BseGI GGATG 4 cut(s) 14, 512, 589, 699
BseLI CCNNNNNNNGG 6 cut(s) 163, 525, 526, 527, 566, 704
BseNI ACTGG 2 cut(s) 420, 668
BseSI GKGCMC 2 cut(s) 89, 340
BseXI GCAGC 1 cut(s) 111
Bsh1236I CGCG 2 cut(s) 67, 718
BshFI GGCC 6 cut(s) 39, 49, 338, 438, 559, 635
BshVI ATCGAT 1 cut(s) 841
BsiHKAI GWGCWC 2 cut(s) 89, 429
BsiHKCI CYCGRG 2 cut(s) 296, 593
BsiSI CCGG 6 cut(s) 30, 40, 164, 297, 556, 594
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 6 cut(s) 163, 525, 526, 527, 566, 704
BsmAI GTCTC 2 cut(s) 67, 776
BsmFI GGGAC 1 cut(s) 220
BsnI GGCC 6 cut(s) 39, 49, 338, 438, 559, 635
Bso31I GGTCTC 1 cut(s) 67
BsoBI CYCGRG 2 cut(s) 296, 593
Bsp120I GGGCCC 1 cut(s) 336
Bsp1286I GDGCHC 3 cut(s) 89, 340, 429
Bsp13I TCCGGA 1 cut(s) 163
Bsp143I GATC 3 cut(s) 482, 744, 814
BspACI CCGC 2 cut(s) 67, 75
BspANI GGCC 6 cut(s) 39, 49, 338, 438, 559, 635
BspDI ATCGAT 1 cut(s) 841
BspEI TCCGGA 1 cut(s) 163
BspFNI CGCG 2 cut(s) 67, 718
BspLI GGNNCC 3 cut(s) 155, 338, 636
BspPI GGATC 2 cut(s) 477, 739
BspTNI GGTCTC 1 cut(s) 67
BsrI ACTGG 2 cut(s) 420, 668
BssECI CCNNGG 9 cut(s) 50, 296, 363, 493, 560, 593, 703, 754, 755
BssMI GATC 3 cut(s) 482, 744, 814
BssNI GRCGYC 1 cut(s) 536
BssSI CACGAG 2 cut(s) 440, 675
BssT1I CCWWGG 2 cut(s) 50, 560
Bst2BI CACGAG 2 cut(s) 440, 675
Bst2UI CCWGG 4 cut(s) 364, 494, 704, 756
Bst4CI ACNGT 2 cut(s) 313, 357
BstACI GRCGYC 1 cut(s) 536
BstC8I GCNNGC 1 cut(s) 129
BstEII GGTNACC 1 cut(s) 693
BstF5I GGATG 4 cut(s) 14, 512, 589, 699
BstFNI CGCG 2 cut(s) 67, 718
BstKTI GATC 3 cut(s) 485, 747, 817
BstMAI GTCTC 2 cut(s) 67, 776
BstMBI GATC 3 cut(s) 482, 744, 814
BstMWI GCNNNNNNNGC 1 cut(s) 286
BstNI CCWGG 4 cut(s) 364, 494, 704, 756
BstPI GGTNACC 1 cut(s) 693
BstSCI CCNGG 8 cut(s) 295, 296, 362, 492, 592, 593, 702, 754
BstSLI GKGCMC 2 cut(s) 89, 340
BstUI CGCG 2 cut(s) 67, 718
BstV1I GCAGC 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 482
BstXI CCANNNNNNTGG 2 cut(s) 493, 755
BstYI RGATCY 1 cut(s) 482
Bsu15I ATCGAT 1 cut(s) 841
BsuRI GGCC 6 cut(s) 39, 49, 338, 438, 559, 635
BsuTUI ATCGAT 1 cut(s) 841
BtgZI GCGATG 1 cut(s) 513
BtsCI GGATG 4 cut(s) 14, 512, 589, 699
BtsIMutI CAGTG 1 cut(s) 427
Cac8I GCNNGC 1 cut(s) 129
Cfr13I GGNCC 3 cut(s) 336, 337, 634
Cfr9I CCCGGG 2 cut(s) 296, 593
ClaI ATCGAT 1 cut(s) 841
Csp6I GTAC 2 cut(s) 197, 207
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 5 cut(s) 346, 377, 651, 742, 772
CviQI GTAC 2 cut(s) 197, 207
DpnI GATC 3 cut(s) 484, 746, 816
DpnII GATC 3 cut(s) 482, 744, 814
DrdI GACNNNNNNGTC 1 cut(s) 541
DseDI GACNNNNNNGTC 1 cut(s) 541
EaeI YGGCCR 2 cut(s) 37, 557
Ecl136II GAGCTC 1 cut(s) 427
Eco130I CCWWGG 2 cut(s) 50, 560
Eco147I AGGCCT 1 cut(s) 438
Eco24I GRGCYC 2 cut(s) 340, 429
Eco31I GGTCTC 1 cut(s) 67
Eco53kI GAGCTC 1 cut(s) 427
Eco88I CYCGRG 2 cut(s) 296, 593
Eco91I GGTNACC 1 cut(s) 693
EcoICRI GAGCTC 1 cut(s) 427
EcoO109I RGGNCCY 2 cut(s) 337, 634
EcoO65I GGTNACC 1 cut(s) 693
EcoRII CCWGG 4 cut(s) 362, 492, 702, 754
EcoT14I CCWWGG 2 cut(s) 50, 560
EcoT38I GRGCYC 2 cut(s) 340, 429
ErhI CCWWGG 2 cut(s) 50, 560
FaeI CATG 5 cut(s) 349, 380, 654, 745, 775
FalI AAGNNNNNCTT 2 cut(s) 472, 504
FaqI GGGAC 1 cut(s) 220
FatI CATG 5 cut(s) 345, 376, 650, 741, 771
FauI CCCGC 1 cut(s) 68
FbaI TGATCA 1 cut(s) 814
Fnu4HI GCNGC 1 cut(s) 125
FokI GGATG 3 cut(s) 519, 576, 686
FriOI GRGCYC 2 cut(s) 340, 429
Fsp4HI GCNGC 1 cut(s) 125
FspBI CTAG 3 cut(s) 284, 446, 768
GluI GCNGC 1 cut(s) 125
HaeIII GGCC 6 cut(s) 39, 49, 338, 438, 559, 635
HapII CCGG 6 cut(s) 30, 40, 164, 297, 556, 594
Hin1I GRCGYC 1 cut(s) 536
Hin1II CATG 5 cut(s) 349, 380, 654, 745, 775
HincII GTYRAC 2 cut(s) 260, 546
HindII GTYRAC 2 cut(s) 260, 546
HindIII AAGCTT 1 cut(s) 129
HinfI GANTC 5 cut(s) 43, 167, 305, 602, 762
HpaII CCGG 6 cut(s) 30, 40, 164, 297, 556, 594
HphI GGTGA 1 cut(s) 687
Hpy166II GTNNAC 5 cut(s) 87, 260, 329, 546, 722
Hpy188I TCNGA 3 cut(s) 398, 534, 574
Hpy188III TCNNGA 2 cut(s) 164, 781
Hpy8I GTNNAC 5 cut(s) 87, 260, 329, 546, 722
Hpy99I CGWCG 1 cut(s) 803
HpyCH4III ACNGT 2 cut(s) 313, 357
HpyCH4IV ACGT 2 cut(s) 191, 536
HpyCH4V TGCA 2 cut(s) 87, 127
HpyF10VI GCNNNNNNNGC 1 cut(s) 286
HpySE526I ACGT 2 cut(s) 191, 536
Hsp92I GRCGYC 1 cut(s) 536
Hsp92II CATG 5 cut(s) 349, 380, 654, 745, 775
Kpn2I TCCGGA 1 cut(s) 163
Ksp22I TGATCA 1 cut(s) 814
Kzo9I GATC 3 cut(s) 482, 744, 814
LmnI GCTCC 1 cut(s) 432
Lsp1109I GCAGC 1 cut(s) 111
LweI GCATC 1 cut(s) 23
MaeI CTAG 3 cut(s) 284, 446, 768
MaeII ACGT 2 cut(s) 191, 536
MaeIII GTNAC 4 cut(s) 509, 585, 659, 693
MalI GATC 3 cut(s) 484, 746, 816
MboI GATC 3 cut(s) 482, 744, 814
MboII GAAGA 1 cut(s) 67
MflI RGATCY 1 cut(s) 482
MhlI GDGCHC 3 cut(s) 89, 340, 429
MluCI AATT 3 cut(s) 148, 290, 581
MlyI GAGTC 4 cut(s) 161, 299, 596, 756
MnlI CCTC 8 cut(s) 207, 291, 361, 449, 519, 550, 625, 658
MroI TCCGGA 1 cut(s) 163
MseI TTAA 3 cut(s) 159, 224, 390
MspI CCGG 6 cut(s) 30, 40, 164, 297, 556, 594
MspR9I CCNGG 8 cut(s) 297, 298, 364, 494, 594, 595, 704, 756
MvaI CCWGG 4 cut(s) 364, 494, 704, 756
MvnI CGCG 2 cut(s) 67, 718
MwoI GCNNNNNNNGC 1 cut(s) 286
NciI CCSGG 4 cut(s) 297, 298, 594, 595
NdeII GATC 3 cut(s) 482, 744, 814
NlaIII CATG 5 cut(s) 349, 380, 654, 745, 775
NlaIV GGNNCC 3 cut(s) 155, 338, 636
NmuCI GTSAC 2 cut(s) 585, 693
PasI CCCWGGG 1 cut(s) 755
PceI AGGCCT 1 cut(s) 438
PfeI GAWTC 1 cut(s) 43
PflMI CCANNNNNTGG 1 cut(s) 566
PkrI GCNGC 1 cut(s) 126
PleI GAGTC 4 cut(s) 161, 299, 596, 756
PpsI GAGTC 4 cut(s) 161, 299, 596, 756
PsiI TTATAA 1 cut(s) 807
Psp124BI GAGCTC 1 cut(s) 429
Psp6I CCWGG 4 cut(s) 362, 492, 702, 754
PspEI GGTNACC 1 cut(s) 693
PspGI CCWGG 4 cut(s) 362, 492, 702, 754
PspN4I GGNNCC 3 cut(s) 155, 338, 636
PspOMI GGGCCC 1 cut(s) 336
PspPI GGNCC 3 cut(s) 336, 337, 634
PsuI RGATCY 1 cut(s) 482
RsaI GTAC 2 cut(s) 198, 208
RsaNI GTAC 2 cut(s) 197, 207
SacI GAGCTC 1 cut(s) 429
SaqAI TTAA 3 cut(s) 159, 224, 390
SatI GCNGC 1 cut(s) 125
Sau3AI GATC 3 cut(s) 482, 744, 814
Sau96I GGNCC 3 cut(s) 336, 337, 634
ScaI AGTACT 1 cut(s) 208
SchI GAGTC 4 cut(s) 161, 299, 596, 756
ScrFI CCNGG 8 cut(s) 297, 298, 364, 494, 594, 595, 704, 756
SduI GDGCHC 3 cut(s) 89, 340, 429
SetI ASST 5 cut(s) 133, 194, 429, 451, 539
SfaNI GCATC 1 cut(s) 23
SmaI CCCGGG 2 cut(s) 298, 595
SmlI CTYRAG 3 cut(s) 246, 523, 629
SmoI CTYRAG 3 cut(s) 246, 523, 629
Sse9I AATT 3 cut(s) 148, 290, 581
SseBI AGGCCT 1 cut(s) 438
SsiI CCGC 2 cut(s) 67, 75
SspMI CTAG 3 cut(s) 284, 446, 768
SstI GAGCTC 1 cut(s) 429
StuI AGGCCT 1 cut(s) 438
StyD4I CCNGG 8 cut(s) 295, 296, 362, 492, 592, 593, 702, 754
StyI CCWWGG 2 cut(s) 50, 560
TaaI ACNGT 2 cut(s) 313, 357
TaiI ACGT 2 cut(s) 194, 539
TaqI TCGA 3 cut(s) 252, 780, 841
TasI AATT 3 cut(s) 148, 290, 581
TatI WGTACW 1 cut(s) 206
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 3 cut(s) 159, 224, 390
Tru9I TTAA 3 cut(s) 159, 224, 390
TscAI CASTG 1 cut(s) 427
TseFI GTSAC 2 cut(s) 585, 693
TseI GCWGC 1 cut(s) 124
Tsp45I GTSAC 2 cut(s) 585, 693
TspDTI ATGAA 1 cut(s) 788
TspGWI ACGGA 2 cut(s) 191, 277
TspMI CCCGGG 2 cut(s) 296, 593
TspRI CASTG 1 cut(s) 427
Van91I CCANNNNNTGG 1 cut(s) 566
VneI GTGCAC 1 cut(s) 85
XmaI CCCGGG 2 cut(s) 296, 593
XspI CTAG 3 cut(s) 284, 446, 768
ZraI GACGTC 1 cut(s) 537
ZrmI AGTACT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.