pycom11g21980

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
24982563 .. 24982790
228 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g21980.1

Sequence Viewer

Length: 228 bp
ATGGGTAACCCATTGGGAAATTCTTGTGTGAGTTCCCAGAAACAAAACCGTAAGAGCATGGTTGGGGCCCAAAGTGGACAATATTGTGCTACAGTAGAGTCGAGCCCGAGATGTGACAATTTGGTATCAGAGCCAATCCCTGGCCGAAAGTGTGCCGACGAGGACGTCTGGCCCCTAAGGGGGGTAGATTGTAACATCCTACATCGACCAGGGAAGTGGATCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.19

Weight (kDa)

8.36

Isoelectric Point (pI)

52.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 164
AatII GACGTC 1 cut(s) 168
AccB7I CCANNNNNTGG 1 cut(s) 140
AclWI GGATC 2 cut(s) 214, 227
AcoI YGGCCR 1 cut(s) 142
AcsI RAATTY 1 cut(s) 19
AcyI GRCGYC 1 cut(s) 165
AfiI CCNNNNNNNGG 4 cut(s) 140, 179, 180, 181
AjnI CCWGG 2 cut(s) 139, 208
AlwI GGATC 2 cut(s) 214, 227
Ama87I CYCGRG 1 cut(s) 106
AoxI GGCC 3 cut(s) 66, 142, 170
ApaI GGGCCC 1 cut(s) 70
ApoI RAATTY 1 cut(s) 19
AspS9I GGNCC 3 cut(s) 66, 67, 171
AvaI CYCGRG 1 cut(s) 106
AxyI CCTNAGG 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 70
BamHI GGATCC 1 cut(s) 219
BanII GRGCYC 2 cut(s) 70, 107
BciT130I CCWGG 2 cut(s) 141, 210
BfmI CTRYAG 1 cut(s) 90
Bme1390I CCNGG 2 cut(s) 141, 210
BmeT110I CYCGRG 1 cut(s) 106
BmgT120I GGNCC 3 cut(s) 66, 67, 171
BmiI GGNNCC 4 cut(s) 67, 68, 173, 221
BmrFI CCNGG 2 cut(s) 141, 210
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 139, 209
Bsc4I CCNNNNNNNGG 4 cut(s) 140, 179, 180, 181
Bse21I CCTNAGG 1 cut(s) 176
BseBI CCWGG 2 cut(s) 141, 210
BseDI CCNNGG 2 cut(s) 139, 209
BseGI GGATG 1 cut(s) 195
BseLI CCNNNNNNNGG 4 cut(s) 140, 179, 180, 181
BseSI GKGCMC 1 cut(s) 70
BshFI GGCC 3 cut(s) 68, 144, 172
BsiHKCI CYCGRG 1 cut(s) 106
BslI CCNNNNNNNGG 4 cut(s) 140, 179, 180, 181
BsnI GGCC 3 cut(s) 68, 144, 172
BsoBI CYCGRG 1 cut(s) 106
Bsp120I GGGCCC 1 cut(s) 66
Bsp1286I GDGCHC 2 cut(s) 70, 107
Bsp143I GATC 1 cut(s) 219
BspANI GGCC 3 cut(s) 68, 144, 172
BspLI GGNNCC 4 cut(s) 67, 68, 173, 221
BspPI GGATC 2 cut(s) 214, 227
BssECI CCNNGG 2 cut(s) 139, 209
BssMI GATC 1 cut(s) 219
BssNI GRCGYC 1 cut(s) 165
Bst2UI CCWGG 2 cut(s) 141, 210
Bst4CI ACNGT 2 cut(s) 50, 94
BstACI GRCGYC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 176
BstEII GGTNACC 1 cut(s) 5
BstF5I GGATG 1 cut(s) 195
BstKTI GATC 1 cut(s) 222
BstMBI GATC 1 cut(s) 219
BstNI CCWGG 2 cut(s) 141, 210
BstPI GGTNACC 1 cut(s) 5
BstSCI CCNGG 2 cut(s) 139, 208
BstSFI CTRYAG 1 cut(s) 90
BstSLI GKGCMC 1 cut(s) 70
BstX2I RGATCY 1 cut(s) 219
BstXI CCANNNNNNTGG 1 cut(s) 216
BstYI RGATCY 1 cut(s) 219
Bsu36I CCTNAGG 1 cut(s) 176
BsuRI GGCC 3 cut(s) 68, 144, 172
BtsCI GGATG 1 cut(s) 195
Cfr13I GGNCC 3 cut(s) 66, 67, 171
CviAII CATG 1 cut(s) 58
CviJI RGCY 5 cut(s) 68, 105, 133, 144, 172
CviKI_1 RGCY 5 cut(s) 68, 105, 133, 144, 172
DdeI CTNAG 1 cut(s) 176
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
DrdI GACNNNNNNGTC 1 cut(s) 164
DseDI GACNNNNNNGTC 1 cut(s) 164
EaeI YGGCCR 1 cut(s) 142
Eco24I GRGCYC 2 cut(s) 70, 107
Eco81I CCTNAGG 1 cut(s) 176
Eco88I CYCGRG 1 cut(s) 106
Eco91I GGTNACC 1 cut(s) 5
EcoO109I RGGNCCY 1 cut(s) 66
EcoO65I GGTNACC 1 cut(s) 5
EcoRII CCWGG 2 cut(s) 139, 208
EcoT38I GRGCYC 2 cut(s) 70, 107
FaeI CATG 1 cut(s) 61
FaiI YATR 2 cut(s) 59, 226
FatI CATG 1 cut(s) 57
FokI GGATG 1 cut(s) 182
FriOI GRGCYC 2 cut(s) 70, 107
HaeIII GGCC 3 cut(s) 68, 144, 172
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 1 cut(s) 61
HinfI GANTC 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 77
Hpy188I TCNGA 1 cut(s) 130
Hpy8I GTNNAC 1 cut(s) 77
Hpy99I CGWCG 1 cut(s) 161
HpyCH4III ACNGT 2 cut(s) 50, 94
HpyCH4IV ACGT 1 cut(s) 165
HpyF3I CTNAG 1 cut(s) 176
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 1 cut(s) 61
Kzo9I GATC 1 cut(s) 219
LpnPI CCDG 6 cut(s) 50, 126, 153, 154, 195, 222
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 3 cut(s) 5, 113, 191
MalI GATC 1 cut(s) 221
MboI GATC 1 cut(s) 219
MflI RGATCY 1 cut(s) 219
MhlI GDGCHC 2 cut(s) 70, 107
MluCI AATT 2 cut(s) 19, 118
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 1 cut(s) 154
MspR9I CCNGG 2 cut(s) 141, 210
MvaI CCWGG 2 cut(s) 141, 210
NdeII GATC 1 cut(s) 219
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 4 cut(s) 67, 68, 173, 221
NmuCI GTSAC 1 cut(s) 113
PflMI CCANNNNNTGG 1 cut(s) 140
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
Psp6I CCWGG 2 cut(s) 139, 208
PspEI GGTNACC 1 cut(s) 5
PspGI CCWGG 2 cut(s) 139, 208
PspN4I GGNNCC 4 cut(s) 67, 68, 173, 221
PspOMI GGGCCC 1 cut(s) 66
PspPI GGNCC 3 cut(s) 66, 67, 171
PsuI RGATCY 1 cut(s) 219
Sau3AI GATC 1 cut(s) 219
Sau96I GGNCC 3 cut(s) 66, 67, 171
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 2 cut(s) 141, 210
SduI GDGCHC 2 cut(s) 70, 107
SetI ASST 1 cut(s) 168
SfcI CTRYAG 1 cut(s) 90
Sse9I AATT 2 cut(s) 19, 118
SspI AATATT 1 cut(s) 83
StyD4I CCNGG 2 cut(s) 139, 208
TaaI ACNGT 2 cut(s) 50, 94
TaiI ACGT 1 cut(s) 168
TaqI TCGA 2 cut(s) 101, 205
TasI AATT 2 cut(s) 19, 118
TseFI GTSAC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 113
Van91I CCANNNNNTGG 1 cut(s) 140
XapI RAATTY 1 cut(s) 19
ZraI GACGTC 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.