pycom10g03890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000158
Physical Location & Seq
Forward (+)
4184199 .. 4186025
1827 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g03890.4

Sequence Viewer

Length: 1413 bp
ATGGCTCAATACCTTTCCACCACTGTGGTAAAGGGCCACTTGCAATTATACTTGTTCTGTTACATCCAGGCACAGGCCCCCACCACATCCCACGCTCGACTCCACCGTAGCACGATGTTTTTGAACCCACGCCATTATGCAAGGGCTCAATACCTTTCCACCACTGTGGTAAAGGGCCATTTGCAATTATACTTGTTCTGTCACATCCCGGTCCTGACCACCACCACATCACGGGCTCAACTCCACCGTAGCACAATATTGTCCGCTTTGGGCCCCTACCACACCCTCACGGTATTGTTTCTGGGAACTCACACGAGAACTTCCCAATGGGTCACCCATCATGGGAGTGCTTTCACACGTTACTCGCTTAACTTCAGAGTTCCTATGGAACCCGAAGCCAGTAAGCTCCCAAAAGGCCTCGTGCTAGGTAGGGATGAGAATATGCATATAAAGATCACTTCCCTGGGCGATCCAAGGTTAGGCTCTGATACCAAATTGTCATATCCCAGCCCGGGATTGTCTACTTTGGGCCCTTACCATACCCTTATAGTTTTGTTTCTGGGAACTCACATGAGAACTTCCCAGCGGGTCACCCATCATGGGAGTGCTCTCGAGCGCTACTCGCCTAACTTCGAAGTTGCCATGGAACCCGAAGCCAGTAAGCTCCCAAAAGGCCTCGTGCTAGATGGGGATGGGAATATACATATAAGGATCACTCCCTTGGGCTACGTGGGATCTAACAATCCACCCTCCTTAGGGGCCCTACATCCTCTGTCACATCCCGGCCCGGGGTCAAGGAACTCCGAAGCCAGTGAGCTCCCAAAAGGCCTCGTGCTAGGTAGAGATGGTAATATACATATAAGGCTTAGAGGATCTACACCCCTGGGCGATGTGGGATGTTACATGTTCGTAATGCTATTTTTCTTTTGTATTTTAAAATTAATTGTTGGATACACGATTACAAGAACCTTGTGTTTTCTTTTTCTTTCTAATTTTAATGTTTTACTTATATTTAATCTTTATTTCATTTGCTTCGTCAAAATATATTTTGTTGTAAAATTTAGGTGCATTAGTTTATTTAGTATATTTCAGTATATCAAACAATATAGACACACACACACACACACACACACACACACACACACACATATATATACACGTACATTAATTCTTTATTACACATTTCGATACATATATTTTGGTACATACATTACGGTATTGACATTTATGTTCATGATAATATATCAGTACAAACATTTAGGCATAGACATTTCGGTACAAAGAATTAGTCATTTCTTTACACTTATGTATTTACATATTTATGTGTCACTAATTTATTTTAGTGTTTCCTCATTTAAGTTTATTTATAATTGGAAGAACTTAAATGTGCAAATTAATAAAATCAAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

471

Amino Acids

54.0

Weight (kDa)

9.81

Isoelectric Point (pI)

28.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1368
AccI GTMKAC 1 cut(s) 521
AciI CCGC 2 cut(s) 264, 586
AclWI GGATC 4 cut(s) 464, 719, 742, 880
AcsI RAATTY 2 cut(s) 1058, 1406
AcuI CTGAAG 1 cut(s) 358
AfaI GTAC 4 cut(s) 1162, 1204, 1250, 1278
AfeI AGCGCT 1 cut(s) 617
AflIII ACRYGT 3 cut(s) 356, 903, 1157
AgsI TTSAA 1 cut(s) 124
AjnI CCWGG 3 cut(s) 66, 462, 882
AleI CACNNNNGTG 2 cut(s) 23, 164
AluBI AGCT 3 cut(s) 406, 664, 817
AluI AGCT 3 cut(s) 406, 664, 817
Alw21I GWGCWC 2 cut(s) 610, 819
AlwI GGATC 4 cut(s) 464, 719, 742, 880
Ama87I CYCGRG 3 cut(s) 511, 611, 787
Aor51HI AGCGCT 1 cut(s) 617
ApaI GGGCCC 3 cut(s) 275, 533, 763
ApoI RAATTY 2 cut(s) 1058, 1406
ArsI GACNNNNNNTTYG 2 cut(s) 1273, 1305
AseI ATTAAT 3 cut(s) 941, 1166, 1395
AspLEI GCGC 1 cut(s) 618
AsuC2I CCSGG 6 cut(s) 209, 512, 513, 783, 788, 789
AsuHPI GGTGA 2 cut(s) 325, 583
AsuII TTCGAA 1 cut(s) 633
AvaI CYCGRG 3 cut(s) 511, 611, 787
AvaII GGWCC 1 cut(s) 211
AxyI CCTNAGG 1 cut(s) 754
BaeGI GKGCMC 3 cut(s) 275, 533, 763
BanII GRGCYC 6 cut(s) 148, 238, 275, 533, 763, 819
BauI CACGAG 4 cut(s) 313, 419, 677, 830
Bbv12I GWGCWC 2 cut(s) 610, 819
BccI CCATC 5 cut(s) 345, 603, 680, 686, 839
BciT130I CCWGG 3 cut(s) 68, 464, 884
BciVI GTATCC 1 cut(s) 944
BcnI CCSGG 6 cut(s) 209, 512, 513, 783, 788, 789
BfaI CTAG 3 cut(s) 425, 683, 836
BfoI RGCGCY 1 cut(s) 619
BfuI GTATCC 1 cut(s) 944
Bme1390I CCNGG 9 cut(s) 68, 209, 464, 512, 513, 783, 788, 789, 884
Bme18I GGWCC 1 cut(s) 211
BmeT110I CYCGRG 3 cut(s) 511, 611, 787
BmiI GGNNCC 8 cut(s) 78, 273, 274, 390, 531, 648, 760, 761
BmrFI CCNGG 9 cut(s) 68, 209, 464, 512, 513, 783, 788, 789, 884
BplI GAGNNNNNCTC 2 cut(s) 605, 637
Bpu14I TTCGAA 1 cut(s) 633
BpuMI CCSGG 6 cut(s) 209, 512, 513, 783, 788, 789
BsaAI YACGTR 2 cut(s) 730, 1160
Bse1I ACTGG 3 cut(s) 399, 657, 810
Bse21I CCTNAGG 1 cut(s) 754
BseBI CCWGG 3 cut(s) 68, 464, 884
BseGI GGATG 8 cut(s) 63, 86, 204, 439, 697, 766, 778, 902
BseNI ACTGG 3 cut(s) 399, 657, 810
BseSI GKGCMC 3 cut(s) 275, 533, 763
BseYI CCCAGC 2 cut(s) 506, 582
BsiHKAI GWGCWC 2 cut(s) 610, 819
BsiHKCI CYCGRG 3 cut(s) 511, 611, 787
BsiSI CCGG 4 cut(s) 209, 512, 783, 788
BsoBI CYCGRG 3 cut(s) 511, 611, 787
Bsp119I TTCGAA 1 cut(s) 633
Bsp120I GGGCCC 3 cut(s) 271, 529, 759
Bsp1286I GDGCHC 7 cut(s) 148, 238, 275, 533, 610, 763, 819
Bsp143I GATC 5 cut(s) 453, 469, 711, 734, 872
Bsp19I CCATGG 1 cut(s) 642
BspACI CCGC 2 cut(s) 264, 586
BspHI TCATGA 1 cut(s) 1233
BspLI GGNNCC 8 cut(s) 78, 273, 274, 390, 531, 648, 760, 761
BspPI GGATC 4 cut(s) 464, 719, 742, 880
BspT104I TTCGAA 1 cut(s) 633
BsrI ACTGG 3 cut(s) 399, 657, 810
BssMI GATC 5 cut(s) 453, 469, 711, 734, 872
BssSI CACGAG 4 cut(s) 313, 419, 677, 830
BssT1I CCWWGG 3 cut(s) 473, 642, 720
Bst2BI CACGAG 4 cut(s) 313, 419, 677, 830
Bst2UI CCWGG 3 cut(s) 68, 464, 884
Bst4CI ACNGT 6 cut(s) 25, 107, 166, 248, 292, 1216
BstBAI YACGTR 2 cut(s) 730, 1160
BstBI TTCGAA 1 cut(s) 633
BstDEI CTNAG 2 cut(s) 754, 866
BstDSI CCRYGG 1 cut(s) 642
BstEII GGTNACC 2 cut(s) 331, 589
BstF5I GGATG 8 cut(s) 63, 86, 204, 439, 697, 766, 778, 902
BstH2I RGCGCY 1 cut(s) 619
BstHHI GCGC 1 cut(s) 618
BstKTI GATC 5 cut(s) 456, 472, 714, 737, 875
BstMBI GATC 5 cut(s) 453, 469, 711, 734, 872
BstMWI GCNNNNNNNGC 1 cut(s) 622
BstNI CCWGG 3 cut(s) 68, 464, 884
BstNSI RCATGY 1 cut(s) 907
BstPI GGTNACC 2 cut(s) 331, 589
BstSCI CCNGG 9 cut(s) 66, 207, 462, 510, 511, 781, 786, 787, 882
BstSLI GKGCMC 3 cut(s) 275, 533, 763
BstX2I RGATCY 2 cut(s) 734, 872
BstXI CCANNNNNNTGG 2 cut(s) 25, 166
BstYI RGATCY 2 cut(s) 734, 872
Bsu36I CCTNAGG 1 cut(s) 754
BsuI GTATCC 1 cut(s) 944
BtgI CCRYGG 1 cut(s) 642
BtgZI GCGATG 1 cut(s) 903
BtsCI GGATG 8 cut(s) 63, 86, 204, 439, 697, 766, 778, 902
BtsIMutI CAGTG 3 cut(s) 21, 162, 817
CciI TCATGA 1 cut(s) 1233
CfoI GCGC 1 cut(s) 618
Cfr9I CCCGGG 2 cut(s) 511, 787
Csp6I GTAC 4 cut(s) 1161, 1203, 1249, 1277
CviAII CATG 6 cut(s) 341, 571, 599, 643, 904, 1234
CviQI GTAC 4 cut(s) 1161, 1203, 1249, 1277
DdeI CTNAG 2 cut(s) 754, 866
DpnI GATC 5 cut(s) 455, 471, 713, 736, 874
DpnII GATC 5 cut(s) 453, 469, 711, 734, 872
DraI TTTAAA 1 cut(s) 936
Ecl136II GAGCTC 1 cut(s) 817
Eco130I CCWWGG 3 cut(s) 473, 642, 720
Eco147I AGGCCT 3 cut(s) 417, 675, 828
Eco24I GRGCYC 6 cut(s) 148, 238, 275, 533, 763, 819
Eco47I GGWCC 1 cut(s) 211
Eco47III AGCGCT 1 cut(s) 617
Eco53kI GAGCTC 1 cut(s) 817
Eco57I CTGAAG 1 cut(s) 358
Eco81I CCTNAGG 1 cut(s) 754
Eco88I CYCGRG 3 cut(s) 511, 611, 787
Eco91I GGTNACC 2 cut(s) 331, 589
EcoICRI GAGCTC 1 cut(s) 817
EcoO109I RGGNCCY 5 cut(s) 76, 272, 530, 759, 760
EcoO65I GGTNACC 2 cut(s) 331, 589
EcoRII CCWGG 3 cut(s) 66, 462, 882
EcoT14I CCWWGG 3 cut(s) 473, 642, 720
EcoT22I ATGCAT 1 cut(s) 447
EcoT38I GRGCYC 6 cut(s) 148, 238, 275, 533, 763, 819
ErhI CCWWGG 3 cut(s) 473, 642, 720
FaeI CATG 6 cut(s) 344, 574, 602, 646, 907, 1237
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FatI CATG 6 cut(s) 340, 570, 598, 642, 903, 1233
FauI CCCGC 1 cut(s) 579
FblI GTMKAC 1 cut(s) 521
FokI GGATG 8 cut(s) 50, 73, 191, 446, 704, 753, 765, 909
FriOI GRGCYC 6 cut(s) 148, 238, 275, 533, 763, 819
FspBI CTAG 3 cut(s) 425, 683, 836
GlaI GCGC 1 cut(s) 617
GsaI CCCAGC 2 cut(s) 510, 586
HaeII RGCGCY 1 cut(s) 619
HapII CCGG 4 cut(s) 209, 512, 783, 788
HhaI GCGC 1 cut(s) 618
Hin1II CATG 6 cut(s) 344, 574, 602, 646, 907, 1237
Hin6I GCGC 1 cut(s) 616
HinP1I GCGC 1 cut(s) 616
HinfI GANTC 1 cut(s) 99
HpaII CCGG 4 cut(s) 209, 512, 783, 788
HphI GGTGA 2 cut(s) 325, 583
Hpy166II GTNNAC 1 cut(s) 522
Hpy188I TCNGA 3 cut(s) 377, 487, 805
Hpy188III TCNNGA 3 cut(s) 214, 611, 1234
Hpy8I GTNNAC 1 cut(s) 522
HpyCH4III ACNGT 6 cut(s) 25, 107, 166, 248, 292, 1216
HpyCH4IV ACGT 3 cut(s) 358, 729, 1159
HpyCH4V TGCA 6 cut(s) 43, 140, 184, 445, 1068, 1390
HpyF10VI GCNNNNNNNGC 1 cut(s) 622
HpyF3I CTNAG 2 cut(s) 754, 866
HpySE526I ACGT 3 cut(s) 358, 729, 1159
Hsp92II CATG 6 cut(s) 344, 574, 602, 646, 907, 1237
HspAI GCGC 1 cut(s) 616
Kzo9I GATC 5 cut(s) 453, 469, 711, 734, 872
LmnI GCTCC 3 cut(s) 411, 669, 822
MaeI CTAG 3 cut(s) 425, 683, 836
MaeII ACGT 3 cut(s) 358, 729, 1159
MaeIII GTNAC 8 cut(s) 59, 200, 331, 359, 589, 774, 899, 1326
MalI GATC 5 cut(s) 455, 471, 713, 736, 874
MboI GATC 5 cut(s) 453, 469, 711, 734, 872
MboII GAAGA 1 cut(s) 1387
MflI RGATCY 2 cut(s) 734, 872
MhlI GDGCHC 7 cut(s) 148, 238, 275, 533, 610, 763, 819
MlyI GAGTC 1 cut(s) 93
MmeI TCCRAC 1 cut(s) 928
MnlI CCTC 8 cut(s) 296, 428, 686, 760, 780, 839, 863, 1360
Mph1103I ATGCAT 1 cut(s) 447
MslI CAYNNNNRTG 5 cut(s) 23, 164, 345, 603, 1320
MspA1I CMGCKG 1 cut(s) 586
MspI CCGG 4 cut(s) 209, 512, 783, 788
MspR9I CCNGG 9 cut(s) 68, 209, 464, 512, 513, 783, 788, 789, 884
MvaI CCWGG 3 cut(s) 68, 464, 884
MwoI GCNNNNNNNGC 1 cut(s) 622
NciI CCSGG 6 cut(s) 209, 512, 513, 783, 788, 789
NcoI CCATGG 1 cut(s) 642
NdeII GATC 5 cut(s) 453, 469, 711, 734, 872
NlaIII CATG 6 cut(s) 344, 574, 602, 646, 907, 1237
NlaIV GGNNCC 8 cut(s) 78, 273, 274, 390, 531, 648, 760, 761
NmuCI GTSAC 5 cut(s) 200, 331, 589, 774, 1326
NsiI ATGCAT 1 cut(s) 447
NspI RCATGY 1 cut(s) 907
NspV TTCGAA 1 cut(s) 633
OliI CACNNNNGTG 2 cut(s) 23, 164
PaeR7I CTCGAG 1 cut(s) 611
PagI TCATGA 1 cut(s) 1233
PasI CCCWGGG 2 cut(s) 463, 883
PceI AGGCCT 3 cut(s) 417, 675, 828
PciI ACATGT 1 cut(s) 903
PcsI WCGNNNNNNNCGW 1 cut(s) 103
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
Ppu21I YACGTR 2 cut(s) 730, 1160
PscI ACATGT 1 cut(s) 903
PshBI ATTAAT 3 cut(s) 941, 1166, 1395
PsiI TTATAA 1 cut(s) 1368
Psp124BI GAGCTC 1 cut(s) 819
Psp6I CCWGG 3 cut(s) 66, 462, 882
PspEI GGTNACC 2 cut(s) 331, 589
PspFI CCCAGC 2 cut(s) 506, 582
PspGI CCWGG 3 cut(s) 66, 462, 882
PspN4I GGNNCC 8 cut(s) 78, 273, 274, 390, 531, 648, 760, 761
PspOMI GGGCCC 3 cut(s) 271, 529, 759
PsuI RGATCY 2 cut(s) 734, 872
RsaI GTAC 4 cut(s) 1162, 1204, 1250, 1278
RsaNI GTAC 4 cut(s) 1161, 1203, 1249, 1277
RseI CAYNNNNRTG 5 cut(s) 23, 164, 345, 603, 1320
SacI GAGCTC 1 cut(s) 819
Sau3AI GATC 5 cut(s) 453, 469, 711, 734, 872
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 9 cut(s) 68, 209, 464, 512, 513, 783, 788, 789, 884
SduI GDGCHC 7 cut(s) 148, 238, 275, 533, 610, 763, 819
Sfr274I CTCGAG 1 cut(s) 611
SfuI TTCGAA 1 cut(s) 633
SinI GGWCC 1 cut(s) 211
SlaI CTCGAG 1 cut(s) 611
SmaI CCCGGG 2 cut(s) 513, 789
SmiMI CAYNNNNRTG 5 cut(s) 23, 164, 345, 603, 1320
SmlI CTYRAG 1 cut(s) 611
SmoI CTYRAG 1 cut(s) 611
SseBI AGGCCT 3 cut(s) 417, 675, 828
SsiI CCGC 2 cut(s) 264, 586
SspI AATATT 1 cut(s) 258
SspMI CTAG 3 cut(s) 425, 683, 836
SstI GAGCTC 1 cut(s) 819
StuI AGGCCT 3 cut(s) 417, 675, 828
StyD4I CCNGG 9 cut(s) 66, 207, 462, 510, 511, 781, 786, 787, 882
StyI CCWWGG 3 cut(s) 473, 642, 720
TaaI ACNGT 6 cut(s) 25, 107, 166, 248, 292, 1216
TaiI ACGT 3 cut(s) 361, 732, 1162
TaqI TCGA 4 cut(s) 97, 612, 633, 1186
TatI WGTACW 1 cut(s) 1248
TscAI CASTG 3 cut(s) 28, 169, 817
TseFI GTSAC 5 cut(s) 200, 331, 589, 774, 1326
Tsp45I GTSAC 5 cut(s) 200, 331, 589, 774, 1326
TspDTI ATGAA 2 cut(s) 1015, 1222
TspMI CCCGGG 2 cut(s) 511, 787
TspRI CASTG 3 cut(s) 28, 169, 817
VpaK11BI GGWCC 1 cut(s) 211
VspI ATTAAT 3 cut(s) 941, 1166, 1395
XapI RAATTY 2 cut(s) 1058, 1406
XceI RCATGY 1 cut(s) 907
XhoI CTCGAG 1 cut(s) 611
XmaI CCCGGG 2 cut(s) 511, 787
XmiI GTMKAC 1 cut(s) 521
XspI CTAG 3 cut(s) 425, 683, 836
Zsp2I ATGCAT 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.