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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 38 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 594 |
| AccBSI | CCGCTC | 1 cut(s) | 631 |
| AccII | CGCG | 1 cut(s) | 109 |
| AciI | CCGC | 3 cut(s) | 109, 629, 1257 |
| AclWI | GGATC | 1 cut(s) | 1400 |
| AcoI | YGGCCR | 1 cut(s) | 609 |
| AcsI | RAATTY | 4 cut(s) | 159, 251, 1035, 1246 |
| AfaI | GTAC | 1 cut(s) | 980 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 352, 464, 465, 579, 580, 612, 733, 920 |
| AflII | CTTAAG | 1 cut(s) | 577 |
| AgsI | TTSAA | 6 cut(s) | 235, 256, 268, 283, 986, 1109 |
| AjiI | CACGTC | 1 cut(s) | 502 |
| AjnI | CCWGG | 3 cut(s) | 543, 611, 621 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1183, 1215 |
| AluBI | AGCT | 3 cut(s) | 788, 796, 1105 |
| AluI | AGCT | 3 cut(s) | 788, 796, 1105 |
| Alw21I | GWGCWC | 2 cut(s) | 798, 1060 |
| AlwI | GGATC | 1 cut(s) | 1400 |
| AoxI | GGCC | 3 cut(s) | 582, 609, 664 |
| ApaI | GGGCCC | 2 cut(s) | 586, 668 |
| ApoI | RAATTY | 4 cut(s) | 159, 251, 1035, 1246 |
| AspS9I | GGNCC | 8 cut(s) | 395, 582, 583, 625, 664, 665, 1097, 1139 |
| AsuC2I | CCSGG | 1 cut(s) | 354 |
| AsuHPI | GGTGA | 2 cut(s) | 447, 716 |
| AvaII | GGWCC | 4 cut(s) | 395, 625, 1097, 1139 |
| BaeGI | GKGCMC | 2 cut(s) | 586, 668 |
| BalI | TGGCCA | 1 cut(s) | 611 |
| BanII | GRGCYC | 4 cut(s) | 359, 586, 668, 798 |
| BauI | CACGAG | 2 cut(s) | 434, 809 |
| BbsI | GAAGAC | 1 cut(s) | 1209 |
| Bbv12I | GWGCWC | 2 cut(s) | 798, 1060 |
| BccI | CCATC | 3 cut(s) | 375, 468, 736 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 1375 |
| BciT130I | CCWGG | 3 cut(s) | 545, 613, 623 |
| BciVI | GTATCC | 2 cut(s) | 950, 1133 |
| BclI | TGATCA | 1 cut(s) | 948 |
| BcnI | CCSGG | 1 cut(s) | 354 |
| BfaI | CTAG | 6 cut(s) | 447, 506, 789, 815, 854, 1088 |
| BfrI | CTTAAG | 1 cut(s) | 577 |
| BfuI | GTATCC | 2 cut(s) | 950, 1133 |
| BisI | GCNGC | 1 cut(s) | 110 |
| BlsI | GCNGC | 1 cut(s) | 111 |
| Bme1390I | CCNGG | 4 cut(s) | 354, 545, 613, 623 |
| Bme18I | GGWCC | 4 cut(s) | 395, 625, 1097, 1139 |
| BmgBI | CACGTC | 1 cut(s) | 502 |
| BmgT120I | GGNCC | 8 cut(s) | 395, 582, 583, 625, 664, 665, 1097, 1139 |
| BmiI | GGNNCC | 5 cut(s) | 397, 584, 627, 666, 780 |
| BmrFI | CCNGG | 4 cut(s) | 354, 545, 613, 623 |
| BpiI | GAAGAC | 1 cut(s) | 1209 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1101 |
| BpuEI | CTTGAG | 2 cut(s) | 111, 946 |
| BpuMI | CCSGG | 1 cut(s) | 354 |
| Bsa29I | ATCGAT | 2 cut(s) | 309, 1011 |
| BsaJI | CCNNGG | 4 cut(s) | 543, 544, 606, 680 |
| BsaWI | WCCGGW | 1 cut(s) | 656 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 352, 464, 465, 579, 580, 612, 733, 920 |
| Bse3DI | GCAATG | 1 cut(s) | 92 |
| BseBI | CCWGG | 3 cut(s) | 545, 613, 623 |
| BseCI | ATCGAT | 2 cut(s) | 309, 1011 |
| BseDI | CCNNGG | 4 cut(s) | 543, 544, 606, 680 |
| BseGI | GGATG | 4 cut(s) | 589, 872, 1339, 1368 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 352, 464, 465, 579, 580, 612, 733, 920 |
| BseMI | GCAATG | 1 cut(s) | 92 |
| BseMII | CTCAG | 1 cut(s) | 37 |
| BseSI | GKGCMC | 2 cut(s) | 586, 668 |
| Bsh1236I | CGCG | 1 cut(s) | 109 |
| BshFI | GGCC | 3 cut(s) | 584, 611, 666 |
| BshVI | ATCGAT | 2 cut(s) | 309, 1011 |
| BsiHKAI | GWGCWC | 2 cut(s) | 798, 1060 |
| BsiSI | CCGG | 2 cut(s) | 353, 657 |
| BslFI | GGGAC | 1 cut(s) | 381 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 352, 464, 465, 579, 580, 612, 733, 920 |
| BsmFI | GGGAC | 1 cut(s) | 381 |
| BsnI | GGCC | 3 cut(s) | 584, 611, 666 |
| Bsp120I | GGGCCC | 2 cut(s) | 582, 664 |
| Bsp1286I | GDGCHC | 5 cut(s) | 359, 586, 668, 798, 1060 |
| Bsp1407I | TGTACA | 1 cut(s) | 978 |
| Bsp143I | GATC | 3 cut(s) | 705, 948, 1392 |
| Bsp19I | CCATGG | 1 cut(s) | 606 |
| BspACI | CCGC | 3 cut(s) | 109, 629, 1257 |
| BspANI | GGCC | 3 cut(s) | 584, 611, 666 |
| BspCNI | CTCAG | 1 cut(s) | 36 |
| BspDI | ATCGAT | 2 cut(s) | 309, 1011 |
| BspFNI | CGCG | 1 cut(s) | 109 |
| BspLI | GGNNCC | 5 cut(s) | 397, 584, 627, 666, 780 |
| BspPI | GGATC | 1 cut(s) | 1400 |
| BspTI | CTTAAG | 1 cut(s) | 577 |
| BsrBI | CCGCTC | 1 cut(s) | 631 |
| BsrDI | GCAATG | 1 cut(s) | 92 |
| BsrGI | TGTACA | 1 cut(s) | 978 |
| BssECI | CCNNGG | 4 cut(s) | 543, 544, 606, 680 |
| BssMI | GATC | 3 cut(s) | 705, 948, 1392 |
| BssSI | CACGAG | 2 cut(s) | 434, 809 |
| BssT1I | CCWWGG | 1 cut(s) | 606 |
| Bst2BI | CACGAG | 2 cut(s) | 434, 809 |
| Bst2UI | CCWGG | 3 cut(s) | 545, 613, 623 |
| Bst4CI | ACNGT | 6 cut(s) | 196, 323, 415, 684, 883, 1215 |
| BstAFI | CTTAAG | 1 cut(s) | 577 |
| BstAUI | TGTACA | 1 cut(s) | 978 |
| BstC8I | GCNNGC | 1 cut(s) | 359 |
| BstDEI | CTNAG | 4 cut(s) | 23, 186, 1041, 1101 |
| BstDSI | CCRYGG | 2 cut(s) | 606, 680 |
| BstEII | GGTNACC | 2 cut(s) | 453, 722 |
| BstF5I | GGATG | 4 cut(s) | 589, 872, 1339, 1368 |
| BstFNI | CGCG | 1 cut(s) | 109 |
| BstKTI | GATC | 3 cut(s) | 708, 951, 1395 |
| BstMBI | GATC | 3 cut(s) | 705, 948, 1392 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1345 |
| BstNI | CCWGG | 3 cut(s) | 545, 613, 623 |
| BstPI | GGTNACC | 2 cut(s) | 453, 722 |
| BstSCI | CCNGG | 4 cut(s) | 352, 543, 611, 621 |
| BstSLI | GKGCMC | 2 cut(s) | 586, 668 |
| BstUI | CGCG | 1 cut(s) | 109 |
| BstV2I | GAAGAC | 1 cut(s) | 1209 |
| Bsu15I | ATCGAT | 2 cut(s) | 309, 1011 |
| BsuI | GTATCC | 2 cut(s) | 950, 1133 |
| BsuRI | GGCC | 3 cut(s) | 584, 611, 666 |
| BsuTUI | ATCGAT | 2 cut(s) | 309, 1011 |
| BtgI | CCRYGG | 2 cut(s) | 606, 680 |
| BtgZI | GCGATG | 1 cut(s) | 564 |
| BtrI | CACGTC | 1 cut(s) | 502 |
| BtsCI | GGATG | 4 cut(s) | 589, 872, 1339, 1368 |
| BtsIMutI | CAGTG | 3 cut(s) | 201, 879, 1211 |
| Cac8I | GCNNGC | 1 cut(s) | 359 |
| Cfr13I | GGNCC | 8 cut(s) | 395, 582, 583, 625, 664, 665, 1097, 1139 |
| ClaI | ATCGAT | 2 cut(s) | 309, 1011 |
| Csp6I | GTAC | 1 cut(s) | 979 |
| CviAII | CATG | 7 cut(s) | 13, 376, 464, 607, 732, 1031, 1304 |
| CviQI | GTAC | 1 cut(s) | 979 |
| DdeI | CTNAG | 4 cut(s) | 23, 186, 1041, 1101 |
| DpnI | GATC | 3 cut(s) | 707, 950, 1394 |
| DpnII | GATC | 3 cut(s) | 705, 948, 1392 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 594 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 594 |
| EaeI | YGGCCR | 1 cut(s) | 609 |
| Ecl136II | GAGCTC | 1 cut(s) | 796 |
| Eco130I | CCWWGG | 1 cut(s) | 606 |
| Eco24I | GRGCYC | 4 cut(s) | 359, 586, 668, 798 |
| Eco47I | GGWCC | 4 cut(s) | 395, 625, 1097, 1139 |
| Eco53kI | GAGCTC | 1 cut(s) | 796 |
| Eco91I | GGTNACC | 2 cut(s) | 453, 722 |
| EcoICRI | GAGCTC | 1 cut(s) | 796 |
| EcoO109I | RGGNCCY | 3 cut(s) | 395, 582, 665 |
| EcoO65I | GGTNACC | 2 cut(s) | 453, 722 |
| EcoRII | CCWGG | 3 cut(s) | 543, 611, 621 |
| EcoT14I | CCWWGG | 1 cut(s) | 606 |
| EcoT38I | GRGCYC | 4 cut(s) | 359, 586, 668, 798 |
| ErhI | CCWWGG | 1 cut(s) | 606 |
| FaeI | CATG | 7 cut(s) | 16, 379, 467, 610, 735, 1034, 1307 |
| FaqI | GGGAC | 1 cut(s) | 381 |
| FatI | CATG | 7 cut(s) | 12, 375, 463, 606, 731, 1030, 1303 |
| FauI | CCCGC | 1 cut(s) | 636 |
| FauNDI | CATATG | 1 cut(s) | 135 |
| FbaI | TGATCA | 1 cut(s) | 948 |
| Fnu4HI | GCNGC | 1 cut(s) | 110 |
| FokI | GGATG | 4 cut(s) | 576, 879, 1346, 1355 |
| FriOI | GRGCYC | 4 cut(s) | 359, 586, 668, 798 |
| Fsp4HI | GCNGC | 1 cut(s) | 110 |
| FspBI | CTAG | 6 cut(s) | 447, 506, 789, 815, 854, 1088 |
| GluI | GCNGC | 1 cut(s) | 110 |
| HaeIII | GGCC | 3 cut(s) | 584, 611, 666 |
| HapII | CCGG | 2 cut(s) | 353, 657 |
| Hin1II | CATG | 7 cut(s) | 16, 379, 467, 610, 735, 1034, 1307 |
| HindIII | AAGCTT | 1 cut(s) | 1103 |
| HinfI | GANTC | 6 cut(s) | 27, 349, 901, 924, 1013, 1109 |
| HpaII | CCGG | 2 cut(s) | 353, 657 |
| HphI | GGTGA | 2 cut(s) | 447, 716 |
| Hpy166II | GTNNAC | 1 cut(s) | 387 |
| Hpy188I | TCNGA | 4 cut(s) | 26, 499, 767, 900 |
| Hpy188III | TCNNGA | 7 cut(s) | 153, 247, 398, 434, 703, 905, 963 |
| Hpy8I | GTNNAC | 1 cut(s) | 387 |
| Hpy99I | CGWCG | 1 cut(s) | 600 |
| HpyAV | CCTTC | 1 cut(s) | 110 |
| HpyCH4III | ACNGT | 6 cut(s) | 196, 323, 415, 684, 883, 1215 |
| HpyCH4IV | ACGT | 3 cut(s) | 501, 910, 953 |
| HpyCH4V | TGCA | 6 cut(s) | 97, 139, 203, 343, 1186, 1241 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1345 |
| HpyF3I | CTNAG | 4 cut(s) | 23, 186, 1041, 1101 |
| HpySE526I | ACGT | 3 cut(s) | 501, 910, 953 |
| Hsp92II | CATG | 7 cut(s) | 16, 379, 467, 610, 735, 1034, 1307 |
| Ksp22I | TGATCA | 1 cut(s) | 948 |
| Kzo9I | GATC | 3 cut(s) | 705, 948, 1392 |
| LmnI | GCTCC | 2 cut(s) | 366, 636 |
| MaeI | CTAG | 6 cut(s) | 447, 506, 789, 815, 854, 1088 |
| MaeII | ACGT | 3 cut(s) | 501, 910, 953 |
| MaeIII | GTNAC | 6 cut(s) | 371, 453, 560, 722, 869, 1309 |
| MalI | GATC | 3 cut(s) | 707, 950, 1394 |
| MbiI | CCGCTC | 1 cut(s) | 631 |
| MboI | GATC | 3 cut(s) | 705, 948, 1392 |
| MboII | GAAGA | 1 cut(s) | 1209 |
| MfeI | CAATTG | 2 cut(s) | 263, 918 |
| MhlI | GDGCHC | 5 cut(s) | 359, 586, 668, 798, 1060 |
| MlsI | TGGCCA | 1 cut(s) | 611 |
| MluNI | TGGCCA | 1 cut(s) | 611 |
| MlyI | GAGTC | 1 cut(s) | 895 |
| MmeI | TCCRAC | 1 cut(s) | 1370 |
| MnlI | CCTC | 8 cut(s) | 319, 419, 603, 818, 924, 959, 1037, 1382 |
| Mox20I | TGGCCA | 1 cut(s) | 611 |
| MscI | TGGCCA | 1 cut(s) | 611 |
| MseI | TTAA | 5 cut(s) | 491, 578, 759, 1065, 1376 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1021 |
| Msp20I | TGGCCA | 1 cut(s) | 611 |
| MspCI | CTTAAG | 1 cut(s) | 577 |
| MspI | CCGG | 2 cut(s) | 353, 657 |
| MspR9I | CCNGG | 4 cut(s) | 354, 545, 613, 623 |
| MunI | CAATTG | 2 cut(s) | 263, 918 |
| MvaI | CCWGG | 3 cut(s) | 545, 613, 623 |
| MvnI | CGCG | 1 cut(s) | 109 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1345 |
| NciI | CCSGG | 1 cut(s) | 354 |
| NcoI | CCATGG | 1 cut(s) | 606 |
| NdeI | CATATG | 1 cut(s) | 135 |
| NdeII | GATC | 3 cut(s) | 705, 948, 1392 |
| NlaIII | CATG | 7 cut(s) | 16, 379, 467, 610, 735, 1034, 1307 |
| NlaIV | GGNNCC | 5 cut(s) | 397, 584, 627, 666, 780 |
| NmuCI | GTSAC | 4 cut(s) | 453, 560, 722, 869 |
| PasI | CCCWGGG | 1 cut(s) | 544 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1199 |
| PfeI | GAWTC | 5 cut(s) | 27, 349, 924, 1013, 1109 |
| PfoI | TCCNGGA | 1 cut(s) | 621 |
| PkrI | GCNGC | 1 cut(s) | 111 |
| PleI | GAGTC | 1 cut(s) | 895 |
| PpsI | GAGTC | 1 cut(s) | 895 |
| PpuMI | RGGWCCY | 1 cut(s) | 395 |
| PsiI | TTATAA | 1 cut(s) | 38 |
| Psp124BI | GAGCTC | 1 cut(s) | 798 |
| Psp5II | RGGWCCY | 1 cut(s) | 395 |
| Psp6I | CCWGG | 3 cut(s) | 543, 611, 621 |
| PspEI | GGTNACC | 2 cut(s) | 453, 722 |
| PspGI | CCWGG | 3 cut(s) | 543, 611, 621 |
| PspN4I | GGNNCC | 5 cut(s) | 397, 584, 627, 666, 780 |
| PspOMI | GGGCCC | 2 cut(s) | 582, 664 |
| PspPI | GGNCC | 8 cut(s) | 395, 582, 583, 625, 664, 665, 1097, 1139 |
| PspPPI | RGGWCCY | 1 cut(s) | 395 |
| RsaI | GTAC | 1 cut(s) | 980 |
| RsaNI | GTAC | 1 cut(s) | 979 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1021 |
| SacI | GAGCTC | 1 cut(s) | 798 |
| SaqAI | TTAA | 5 cut(s) | 491, 578, 759, 1065, 1376 |
| SatI | GCNGC | 1 cut(s) | 110 |
| Sau3AI | GATC | 3 cut(s) | 705, 948, 1392 |
| Sau96I | GGNCC | 8 cut(s) | 395, 582, 583, 625, 664, 665, 1097, 1139 |
| SchI | GAGTC | 1 cut(s) | 895 |
| ScrFI | CCNGG | 4 cut(s) | 354, 545, 613, 623 |
| SduI | GDGCHC | 5 cut(s) | 359, 586, 668, 798, 1060 |
| SinI | GGWCC | 4 cut(s) | 395, 625, 1097, 1139 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1021 |
| SmlI | CTYRAG | 3 cut(s) | 126, 577, 961 |
| SmoI | CTYRAG | 3 cut(s) | 126, 577, 961 |
| SsiI | CCGC | 3 cut(s) | 109, 629, 1257 |
| SspI | AATATT | 2 cut(s) | 651, 1227 |
| SspMI | CTAG | 6 cut(s) | 447, 506, 789, 815, 854, 1088 |
| SstI | GAGCTC | 1 cut(s) | 798 |
| StyD4I | CCNGG | 4 cut(s) | 352, 543, 611, 621 |
| StyI | CCWWGG | 1 cut(s) | 606 |
| TaaI | ACNGT | 6 cut(s) | 196, 323, 415, 684, 883, 1215 |
| TaiI | ACGT | 3 cut(s) | 504, 913, 956 |
| TaqI | TCGA | 3 cut(s) | 309, 1011, 1395 |
| TatI | WGTACW | 1 cut(s) | 978 |
| TauI | GCSGC | 1 cut(s) | 112 |
| TfiI | GAWTC | 5 cut(s) | 27, 349, 924, 1013, 1109 |
| Tru1I | TTAA | 5 cut(s) | 491, 578, 759, 1065, 1376 |
| Tru9I | TTAA | 5 cut(s) | 491, 578, 759, 1065, 1376 |
| TscAI | CASTG | 3 cut(s) | 201, 886, 1218 |
| TseFI | GTSAC | 4 cut(s) | 453, 560, 722, 869 |
| Tsp45I | GTSAC | 4 cut(s) | 453, 560, 722, 869 |
| TspDTI | ATGAA | 7 cut(s) | 19, 81, 225, 1005, 1047, 1119, 1279 |
| TspGWI | ACGGA | 2 cut(s) | 791, 1191 |
| TspRI | CASTG | 3 cut(s) | 201, 886, 1218 |
| Vha464I | CTTAAG | 1 cut(s) | 577 |
| VpaK11BI | GGWCC | 4 cut(s) | 395, 625, 1097, 1139 |
| XapI | RAATTY | 4 cut(s) | 159, 251, 1035, 1246 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 619 |
| XspI | CTAG | 6 cut(s) | 447, 506, 789, 815, 854, 1088 |