pycom13g23050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000158
Physical Location & Seq
Forward (+)
20755017 .. 20756087
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g23050.4

Sequence Viewer

Length: 741 bp
ATGACACGAAAACGACAAGAAAATAATAGGTTTCGGGTCAATACGATAACTAATTGGGTATACACGTGGGTAACCCGTTTCGACCCATTAAAAAAAATAAATTACAATTTTAAAATATTGGTATATTCTATGTTAAATATATTTTTTTGTATTATTATTCTATATAAGTTTAAAAAATTAAGTTTTATTCATTTATTTATTTTTATTATGAGAGTTTTATTGTCACAACCTGGGTCGGGACGGATCACTTCCCGGGCCCGCTCCACCACCGTAGCACGATATTGTCCGTTTTGGGCTTACCATTCTCTCACGGTTTTTTTTTTGGGAACTCATGACCAACTTTCCAGTGGGTCACCCATCATGGGATTGCTCCAGCCCAAACTCCTAGGTAAAGATGGGAATATACATTTAAGGATCACTCCCCTAGGCGATGTTGCAATAAGACATCCCTACAAGTATGAAAAATGTGAAAGAATATATAAAATCATCATTCCTCCACGAGTAGACAGTGGTTACACTTACATTATCTGTAAAAGTAATAAAATTAATAATAATTATTGTAGAAGTGTAAGAGATGTAAAAAAAAAAAAAAAATATATATATATACAATCACTCGTAGTGACAAACTTTACAACTTTCGTAAAGGGCTCAACTTCGAAATCCGACACTATAATCCATAAACCATTGAATTTTACTTTTAAAAATTTCTTTTTTGAAAACATGATCTTTTGGGGGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

29.13

Weight (kDa)

10.17

Isoelectric Point (pI)

22.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 261
AccI GTMKAC 2 cut(s) 60, 504
AciI CCGC 1 cut(s) 259
AclWI GGATC 2 cut(s) 251, 422
AcsI RAATTY 2 cut(s) 688, 703
AcvI CACGTG 1 cut(s) 66
AfiI CCNNNNNNNGG 2 cut(s) 236, 362
AflIII ACRYGT 1 cut(s) 63
AgsI TTSAA 2 cut(s) 688, 716
AjnI CCWGG 1 cut(s) 229
AlwI GGATC 2 cut(s) 251, 422
Ama87I CYCGRG 1 cut(s) 252
AoxI GGCC 1 cut(s) 255
ApaI GGGCCC 1 cut(s) 259
ApoI RAATTY 2 cut(s) 688, 703
AseI ATTAAT 1 cut(s) 546
AspA2I CCTAGG 2 cut(s) 385, 424
AspS9I GGNCC 2 cut(s) 255, 256
AsuC2I CCSGG 2 cut(s) 253, 254
AsuHPI GGTGA 1 cut(s) 345
AsuII TTCGAA 1 cut(s) 656
AvaI CYCGRG 1 cut(s) 252
AvrII CCTAGG 2 cut(s) 385, 424
BaeGI GKGCMC 1 cut(s) 259
BanII GRGCYC 2 cut(s) 259, 650
BauI CACGAG 1 cut(s) 498
BbrPI CACGTG 1 cut(s) 66
BccI CCATC 2 cut(s) 365, 389
BciT130I CCWGG 1 cut(s) 231
BcnI CCSGG 2 cut(s) 253, 254
BfaI CTAG 2 cut(s) 386, 425
BlnI CCTAGG 2 cut(s) 385, 424
Bme1390I CCNGG 3 cut(s) 231, 253, 254
BmeT110I CYCGRG 1 cut(s) 252
BmgT120I GGNCC 2 cut(s) 255, 256
BmiI GGNNCC 1 cut(s) 257
BmrFI CCNGG 3 cut(s) 231, 253, 254
BpmI CTGGAG 1 cut(s) 356
Bpu14I TTCGAA 1 cut(s) 656
BpuMI CCSGG 2 cut(s) 253, 254
BsaAI YACGTR 1 cut(s) 66
BsaJI CCNNGG 4 cut(s) 230, 252, 385, 424
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 362
Bse1I ACTGG 1 cut(s) 345
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 4 cut(s) 230, 252, 385, 424
BseGI GGATG 2 cut(s) 445, 741
BseLI CCNNNNNNNGG 2 cut(s) 236, 362
BseNI ACTGG 1 cut(s) 345
BseSI GKGCMC 1 cut(s) 259
BshFI GGCC 1 cut(s) 257
BsiHKCI CYCGRG 1 cut(s) 252
BsiSI CCGG 1 cut(s) 253
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 2 cut(s) 236, 362
BsmFI GGGAC 1 cut(s) 252
BsnI GGCC 1 cut(s) 257
BsoBI CYCGRG 1 cut(s) 252
Bsp119I TTCGAA 1 cut(s) 656
Bsp120I GGGCCC 1 cut(s) 255
Bsp1286I GDGCHC 2 cut(s) 259, 650
Bsp143I GATC 3 cut(s) 243, 414, 723
BspACI CCGC 1 cut(s) 259
BspANI GGCC 1 cut(s) 257
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 257
BspPI GGATC 2 cut(s) 251, 422
BspT104I TTCGAA 1 cut(s) 656
BsrBI CCGCTC 1 cut(s) 261
BsrI ACTGG 1 cut(s) 345
BssECI CCNNGG 4 cut(s) 230, 252, 385, 424
BssMI GATC 3 cut(s) 243, 414, 723
BssNAI GTATAC 1 cut(s) 61
BssSI CACGAG 1 cut(s) 498
BssT1I CCWWGG 2 cut(s) 385, 424
Bst1107I GTATAC 1 cut(s) 61
Bst2BI CACGAG 1 cut(s) 498
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 3 cut(s) 271, 313, 509
BstBAI YACGTR 1 cut(s) 66
BstBI TTCGAA 1 cut(s) 656
BstC8I GCNNGC 1 cut(s) 259
BstEII GGTNACC 2 cut(s) 70, 351
BstF5I GGATG 2 cut(s) 445, 741
BstKTI GATC 3 cut(s) 246, 417, 726
BstMBI GATC 3 cut(s) 243, 414, 723
BstNI CCWGG 1 cut(s) 231
BstPI GGTNACC 2 cut(s) 70, 351
BstSCI CCNGG 3 cut(s) 229, 251, 252
BstSLI GKGCMC 1 cut(s) 259
BstZ17I GTATAC 1 cut(s) 61
BsuRI GGCC 1 cut(s) 257
BtgZI GCGATG 1 cut(s) 444
BtsCI GGATG 2 cut(s) 445, 741
BtsIMutI CAGTG 2 cut(s) 352, 514
Cac8I GCNNGC 1 cut(s) 259
CciI TCATGA 1 cut(s) 331
Cfr13I GGNCC 2 cut(s) 255, 256
Cfr9I CCCGGG 1 cut(s) 252
CviAII CATG 3 cut(s) 332, 361, 721
CviJI RGCY 4 cut(s) 257, 296, 376, 648
CviKI_1 RGCY 4 cut(s) 257, 296, 376, 648
DpnI GATC 3 cut(s) 245, 416, 725
DpnII GATC 3 cut(s) 243, 414, 723
DraI TTTAAA 3 cut(s) 112, 172, 700
Eco130I CCWWGG 2 cut(s) 385, 424
Eco24I GRGCYC 2 cut(s) 259, 650
Eco72I CACGTG 1 cut(s) 66
Eco88I CYCGRG 1 cut(s) 252
Eco91I GGTNACC 2 cut(s) 70, 351
EcoO65I GGTNACC 2 cut(s) 70, 351
EcoRII CCWGG 1 cut(s) 229
EcoT14I CCWWGG 2 cut(s) 385, 424
EcoT38I GRGCYC 2 cut(s) 259, 650
ErhI CCWWGG 2 cut(s) 385, 424
FaeI CATG 3 cut(s) 335, 364, 724
FaqI GGGAC 1 cut(s) 252
FatI CATG 3 cut(s) 331, 360, 720
FauI CCCGC 1 cut(s) 266
FblI GTMKAC 2 cut(s) 60, 504
FokI GGATG 1 cut(s) 432
FriOI GRGCYC 2 cut(s) 259, 650
FspBI CTAG 2 cut(s) 386, 425
GsuI CTGGAG 1 cut(s) 356
HaeIII GGCC 1 cut(s) 257
HapII CCGG 1 cut(s) 253
Hin1II CATG 3 cut(s) 335, 364, 724
HpaII CCGG 1 cut(s) 253
HphI GGTGA 1 cut(s) 345
Hpy166II GTNNAC 2 cut(s) 61, 505
Hpy188I TCNGA 1 cut(s) 664
Hpy188III TCNNGA 2 cut(s) 237, 332
Hpy8I GTNNAC 2 cut(s) 61, 505
HpyCH4III ACNGT 3 cut(s) 271, 313, 509
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 1 cut(s) 437
HpySE526I ACGT 1 cut(s) 65
Hsp92II CATG 3 cut(s) 335, 364, 724
Kzo9I GATC 3 cut(s) 243, 414, 723
LmnI GCTCC 2 cut(s) 266, 375
LpnPI CCDG 5 cut(s) 216, 243, 266, 358, 386
MaeI CTAG 2 cut(s) 386, 425
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 5 cut(s) 70, 222, 351, 512, 619
MalI GATC 3 cut(s) 245, 416, 725
MbiI CCGCTC 1 cut(s) 261
MboI GATC 3 cut(s) 243, 414, 723
MhlI GDGCHC 2 cut(s) 259, 650
MluCI AATT 8 cut(s) 52, 100, 106, 176, 543, 553, 688, 703
MmeI TCCRAC 1 cut(s) 687
MnlI CCTC 1 cut(s) 504
MseI TTAA 8 cut(s) 89, 111, 134, 171, 179, 410, 546, 699
MspI CCGG 1 cut(s) 253
MspR9I CCNGG 3 cut(s) 231, 253, 254
MvaI CCWGG 1 cut(s) 231
NciI CCSGG 2 cut(s) 253, 254
NdeII GATC 3 cut(s) 243, 414, 723
NlaIII CATG 3 cut(s) 335, 364, 724
NlaIV GGNNCC 1 cut(s) 257
NmuCI GTSAC 3 cut(s) 222, 351, 619
NspV TTCGAA 1 cut(s) 656
PagI TCATGA 1 cut(s) 331
PmaCI CACGTG 1 cut(s) 66
PmlI CACGTG 1 cut(s) 66
Ppu21I YACGTR 1 cut(s) 66
PshBI ATTAAT 1 cut(s) 546
Psp6I CCWGG 1 cut(s) 229
PspCI CACGTG 1 cut(s) 66
PspEI GGTNACC 2 cut(s) 70, 351
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 257
PspOMI GGGCCC 1 cut(s) 255
PspPI GGNCC 2 cut(s) 255, 256
SaqAI TTAA 8 cut(s) 89, 111, 134, 171, 179, 410, 546, 699
Sau3AI GATC 3 cut(s) 243, 414, 723
Sau96I GGNCC 2 cut(s) 255, 256
ScrFI CCNGG 3 cut(s) 231, 253, 254
SduI GDGCHC 2 cut(s) 259, 650
SetI ASST 4 cut(s) 32, 68, 232, 391
SfuI TTCGAA 1 cut(s) 656
SmaI CCCGGG 1 cut(s) 254
Sse9I AATT 8 cut(s) 52, 100, 106, 176, 543, 553, 688, 703
SsiI CCGC 1 cut(s) 259
SspI AATATT 1 cut(s) 117
SspMI CTAG 2 cut(s) 386, 425
StyD4I CCNGG 3 cut(s) 229, 251, 252
StyI CCWWGG 2 cut(s) 385, 424
TaaI ACNGT 3 cut(s) 271, 313, 509
TaiI ACGT 1 cut(s) 68
TaqI TCGA 2 cut(s) 81, 656
TasI AATT 8 cut(s) 52, 100, 106, 176, 543, 553, 688, 703
Tru1I TTAA 8 cut(s) 89, 111, 134, 171, 179, 410, 546, 699
Tru9I TTAA 8 cut(s) 89, 111, 134, 171, 179, 410, 546, 699
TscAI CASTG 2 cut(s) 352, 514
TseFI GTSAC 3 cut(s) 222, 351, 619
Tsp45I GTSAC 3 cut(s) 222, 351, 619
TspDTI ATGAA 2 cut(s) 179, 474
TspGWI ACGGA 2 cut(s) 256, 276
TspMI CCCGGG 1 cut(s) 252
TspRI CASTG 2 cut(s) 352, 514
VspI ATTAAT 1 cut(s) 546
XapI RAATTY 2 cut(s) 688, 703
XcmI CCANNNNNNNNNTGG 1 cut(s) 344
XmaI CCCGGG 1 cut(s) 252
XmaJI CCTAGG 2 cut(s) 385, 424
XmiI GTMKAC 2 cut(s) 60, 504
XspI CTAG 2 cut(s) 386, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.