pycom13g24760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000158
Physical Location & Seq
Forward (+)
21799343 .. 21801329
1987 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g24760.12

Sequence Viewer

Length: 1368 bp
ATGAATATGTATATATTTTTTATTTATTTCTTTATTTTTATATTATATTATAGGCAAAGATTGAGATTAAAAATCATAAAACACATTAAAAATAAAAATATCAACTGTCACATCCCGGCCCGGGCAAGACCACTTCTCGGGCTCGACTCCACTACCGTAGCACGATATTGTCCGTTTTGGGCTTACCATTCCCTCACGGTTTTGTTTTTGGGAACTCACGAGCAACTTCCCAGTTGGGTCACCCATCATGGGATTGCTCTAGCCCCTTTCTCGCTTAACTTCGGAGTTCCTACGGAACCTGAAGCCAGTGAGCTCCCAAAATGCCTCGTGCTAGGTAGGGATGGGAATATACATTTAAGGATCACTCCCCTGGGCGATGTGGGATGTCACAATATCCATCCATTTCCCTTTAACTTGAATAAAATACGTAATAAAAAACATAAATGTAATTTTATTATTAAATATCATCACATACTAATTGAAACATATTATTCCAATTATACTTTCATTAAGTATAACATAAGATTCACTAGTTCATATAGGGTCAAGGAGTGTAGCTGTAAAAAATCATCAAAATCGGATTTTGTTTTTTGCAATTTTTGGCGTATGTGGTCTCGAAGTATATACAAAGATGTTGGGATCATTGAAACTAGTTTTGTAGAATGCGTATCCCATCAAAACAATAGATTCACTAACACTTATGAGTTTATTCATACTTTTAGTAAGTATAACATAAGATTTTTGTGGTATCCAATAATTCATATAAGGTCAAGGAGTGTAGCTGTAAAAAAATCATCAAAAACGGAGTTAAAACAACCGTTAAATTATGATTTTTCGTTTATAACTGTTGAAAATTTTGGCGTATGTGATCTCGAAGCATATACAAACAAGTTTGACGGTTGGATGGTTGAAATTAGTTTCATAGAATTCGTATCCCATCAAGTTCAATGGTATATATATATACACACACAAGCCAAACTTGTTTTGATGGGATACGCATTCTACGAAACTAATTTCAACGATCCAATCGTCAAATTTGTTTATATATTTAGAGATCAAGTAACGGGACCAAACTTTTCTATGGTTATAAACAAAAAATTACGATTTAACAGTTATTTTAACTCCGATTTTGATGAATTCGATCTTCAATTTAAAATATTTACACTAGTGGATACCACAAAATCTTATGTTGTACTTAATGAAAGGGATACGCATCCTATGAAACTAATTTCAATGATCCAACCGTCAAACTTGTTCATATATGCTTCGAGATCGCATACACCAAAAATTGCAAAAAAAAAAAAACTTTCAAGATCAAGTAATGAGACAAAACTTTTCAACGGTTATAAACGAAAAATCACGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

456

Amino Acids

54.08

Weight (kDa)

9.59

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 842, 1088, 1347
AclWI GGATC 4 cut(s) 368, 647, 1016, 1231
AcsI RAATTY 4 cut(s) 853, 926, 1034, 1136
AcuI CTGAAG 1 cut(s) 321
AfaI GTAC 1 cut(s) 1194
AfiI CCNNNNNNNGG 3 cut(s) 121, 137, 249
AhlI ACTAGT 3 cut(s) 530, 650, 1165
AjnI CCWGG 1 cut(s) 369
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AluBI AGCT 3 cut(s) 313, 558, 782
AluI AGCT 3 cut(s) 313, 558, 782
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 2 cut(s) 618, 1319
AlwI GGATC 4 cut(s) 368, 647, 1016, 1231
Ama87I CYCGRG 2 cut(s) 120, 137
AoxI GGCC 1 cut(s) 117
ApoI RAATTY 4 cut(s) 853, 926, 1034, 1136
AspS9I GGNCC 2 cut(s) 118, 1067
AsuC2I CCSGG 3 cut(s) 116, 121, 122
AsuHPI GGTGA 1 cut(s) 232
AvaI CYCGRG 2 cut(s) 120, 137
AvaII GGWCC 1 cut(s) 1067
BanII GRGCYC 2 cut(s) 144, 315
BauI CACGAG 2 cut(s) 218, 326
Bbv12I GWGCWC 1 cut(s) 315
BccI CCATC 7 cut(s) 252, 335, 405, 681, 898, 945, 982
BciT130I CCWGG 1 cut(s) 371
BciVI GTATCC 6 cut(s) 679, 759, 943, 986, 1165, 1201
BcnI CCSGG 3 cut(s) 116, 121, 122
BcoDI GTCTC 2 cut(s) 618, 1319
BcuI ACTAGT 3 cut(s) 530, 650, 1165
BfaI CTAG 5 cut(s) 260, 332, 531, 651, 1166
BfuI GTATCC 6 cut(s) 679, 759, 943, 986, 1165, 1201
Bme1390I CCNGG 4 cut(s) 116, 121, 122, 371
Bme18I GGWCC 1 cut(s) 1067
BmeT110I CYCGRG 2 cut(s) 120, 137
BmgT120I GGNCC 2 cut(s) 118, 1067
BmiI GGNNCC 2 cut(s) 297, 1068
BmrFI CCNGG 4 cut(s) 116, 121, 122, 371
BmrI ACTGGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 1222
BmuI ACTGGG 1 cut(s) 225
BpuMI CCSGG 3 cut(s) 116, 121, 122
BsaAI YACGTR 1 cut(s) 428
BsaBI GATNNNNATC 1 cut(s) 1212
BsaI GGTCTC 1 cut(s) 618
BsaJI CCNNGG 3 cut(s) 120, 369, 370
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 137, 249
Bse1I ACTGG 2 cut(s) 231, 306
Bse8I GATNNNNATC 1 cut(s) 1212
BseBI CCWGG 1 cut(s) 371
BseDI CCNNGG 3 cut(s) 120, 369, 370
BseGI GGATG 6 cut(s) 111, 346, 389, 397, 909, 1213
BseJI GATNNNNATC 1 cut(s) 1212
BseLI CCNNNNNNNGG 3 cut(s) 121, 137, 249
BseNI ACTGG 2 cut(s) 231, 306
BshFI GGCC 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 315
BsiHKCI CYCGRG 2 cut(s) 120, 137
BsiSI CCGG 2 cut(s) 116, 121
BslFI GGGAC 1 cut(s) 1080
BslI CCNNNNNNNGG 3 cut(s) 121, 137, 249
BsmAI GTCTC 2 cut(s) 618, 1319
BsmFI GGGAC 1 cut(s) 1080
BsmI GAATGC 2 cut(s) 668, 998
BsnI GGCC 1 cut(s) 119
Bso31I GGTCTC 1 cut(s) 618
BsoBI CYCGRG 2 cut(s) 120, 137
Bsp1286I GDGCHC 2 cut(s) 144, 315
Bsp143I GATC 9 cut(s) 360, 639, 868, 1021, 1054, 1141, 1236, 1271, 1313
BspANI GGCC 1 cut(s) 119
BspLI GGNNCC 2 cut(s) 297, 1068
BspPI GGATC 4 cut(s) 368, 647, 1016, 1231
BspTNI GGTCTC 1 cut(s) 618
BsrI ACTGG 2 cut(s) 231, 306
BssECI CCNNGG 3 cut(s) 120, 369, 370
BssMI GATC 9 cut(s) 360, 639, 868, 1021, 1054, 1141, 1236, 1271, 1313
BssSI CACGAG 2 cut(s) 218, 326
Bst2BI CACGAG 2 cut(s) 218, 326
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 9 cut(s) 107, 157, 199, 819, 847, 899, 1112, 1245, 1343
BstBAI YACGTR 1 cut(s) 428
BstEII GGTNACC 1 cut(s) 238
BstF5I GGATG 6 cut(s) 111, 346, 389, 397, 909, 1213
BstKTI GATC 9 cut(s) 363, 642, 871, 1024, 1057, 1144, 1239, 1274, 1316
BstMAI GTCTC 2 cut(s) 618, 1319
BstMBI GATC 9 cut(s) 360, 639, 868, 1021, 1054, 1141, 1236, 1271, 1313
BstNI CCWGG 1 cut(s) 371
BstPI GGTNACC 1 cut(s) 238
BstSCI CCNGG 4 cut(s) 114, 119, 120, 369
BstSNI TACGTA 1 cut(s) 428
BsuI GTATCC 6 cut(s) 679, 759, 943, 986, 1165, 1201
BsuRI GGCC 1 cut(s) 119
BtgZI GCGATG 1 cut(s) 390
BtsCI GGATG 6 cut(s) 111, 346, 389, 397, 909, 1213
BtsIMutI CAGTG 1 cut(s) 313
Cfr13I GGNCC 2 cut(s) 118, 1067
Cfr9I CCCGGG 1 cut(s) 120
Csp6I GTAC 1 cut(s) 1193
CviAII CATG 1 cut(s) 248
CviJI RGCY 9 cut(s) 119, 142, 182, 263, 305, 313, 558, 782, 974
CviKI_1 RGCY 9 cut(s) 119, 142, 182, 263, 305, 313, 558, 782, 974
CviQI GTAC 1 cut(s) 1193
DpnI GATC 9 cut(s) 362, 641, 870, 1023, 1056, 1143, 1238, 1273, 1315
DpnII GATC 9 cut(s) 360, 639, 868, 1021, 1054, 1141, 1236, 1271, 1313
DraI TTTAAA 1 cut(s) 1153
Ecl136II GAGCTC 1 cut(s) 313
Eco105I TACGTA 1 cut(s) 428
Eco24I GRGCYC 2 cut(s) 144, 315
Eco31I GGTCTC 1 cut(s) 618
Eco47I GGWCC 1 cut(s) 1067
Eco53kI GAGCTC 1 cut(s) 313
Eco57I CTGAAG 1 cut(s) 321
Eco88I CYCGRG 2 cut(s) 120, 137
Eco91I GGTNACC 1 cut(s) 238
EcoICRI GAGCTC 1 cut(s) 313
EcoO65I GGTNACC 1 cut(s) 238
EcoRI GAATTC 2 cut(s) 926, 1136
EcoRII CCWGG 1 cut(s) 369
EcoT38I GRGCYC 2 cut(s) 144, 315
FaeI CATG 1 cut(s) 251
FalI AAGNNNNNCTT 2 cut(s) 963, 995
FaqI GGGAC 1 cut(s) 1080
FatI CATG 1 cut(s) 247
FokI GGATG 6 cut(s) 98, 353, 384, 396, 916, 1200
FriOI GRGCYC 2 cut(s) 144, 315
FspBI CTAG 5 cut(s) 260, 332, 531, 651, 1166
HaeIII GGCC 1 cut(s) 119
HapII CCGG 2 cut(s) 116, 121
Hin1II CATG 1 cut(s) 251
HinfI GANTC 3 cut(s) 146, 525, 687
HpaII CCGG 2 cut(s) 116, 121
HphI GGTGA 1 cut(s) 232
Hpy188I TCNGA 3 cut(s) 284, 580, 1126
Hpy188III TCNNGA 6 cut(s) 218, 615, 872, 1269, 1311, 1360
HpyCH4III ACNGT 9 cut(s) 107, 157, 199, 819, 847, 899, 1112, 1245, 1343
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 2 cut(s) 594, 1292
HpySE526I ACGT 1 cut(s) 427
Hsp92II CATG 1 cut(s) 251
Kzo9I GATC 9 cut(s) 360, 639, 868, 1021, 1054, 1141, 1236, 1271, 1313
LmnI GCTCC 1 cut(s) 318
LpnPI CCDG 7 cut(s) 129, 134, 244, 312, 319, 356, 383
LweI GCATC 1 cut(s) 1222
MaeI CTAG 5 cut(s) 260, 332, 531, 651, 1166
MaeII ACGT 1 cut(s) 427
MaeIII GTNAC 4 cut(s) 107, 238, 386, 1060
MalI GATC 9 cut(s) 362, 641, 870, 1023, 1056, 1143, 1238, 1273, 1315
MboI GATC 9 cut(s) 360, 639, 868, 1021, 1054, 1141, 1236, 1271, 1313
MboII GAAGA 1 cut(s) 1136
MhlI GDGCHC 2 cut(s) 144, 315
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 2 cut(s) 881, 1264
MnlI CCTC 2 cut(s) 203, 335
MspI CCGG 2 cut(s) 116, 121
MspR9I CCNGG 4 cut(s) 116, 121, 122, 371
Mva1269I GAATGC 2 cut(s) 668, 998
MvaI CCWGG 1 cut(s) 371
NciI CCSGG 3 cut(s) 116, 121, 122
NdeII GATC 9 cut(s) 360, 639, 868, 1021, 1054, 1141, 1236, 1271, 1313
NlaIII CATG 1 cut(s) 251
NlaIV GGNNCC 2 cut(s) 297, 1068
NmuCI GTSAC 3 cut(s) 107, 238, 386
PasI CCCWGGG 1 cut(s) 370
PcsI WCGNNNNNNNCGW 2 cut(s) 1002, 1026
PctI GAATGC 2 cut(s) 668, 998
PfeI GAWTC 2 cut(s) 525, 687
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
Ppu21I YACGTR 1 cut(s) 428
PsiI TTATAA 3 cut(s) 842, 1088, 1347
Psp124BI GAGCTC 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 369
PspEI GGTNACC 1 cut(s) 238
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 2 cut(s) 297, 1068
PspPI GGNCC 2 cut(s) 118, 1067
RsaI GTAC 1 cut(s) 1194
RsaNI GTAC 1 cut(s) 1193
SacI GAGCTC 1 cut(s) 315
Sau3AI GATC 9 cut(s) 360, 639, 868, 1021, 1054, 1141, 1236, 1271, 1313
Sau96I GGNCC 2 cut(s) 118, 1067
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 4 cut(s) 116, 121, 122, 371
SduI GDGCHC 2 cut(s) 144, 315
SetI ASST 7 cut(s) 301, 315, 337, 430, 560, 770, 784
SfaNI GCATC 1 cut(s) 1222
SinI GGWCC 1 cut(s) 1067
SmaI CCCGGG 1 cut(s) 122
SnaBI TACGTA 1 cut(s) 428
SpeI ACTAGT 3 cut(s) 530, 650, 1165
SrfI GCCCGGGC 1 cut(s) 122
SspI AATATT 1 cut(s) 1158
SspMI CTAG 5 cut(s) 260, 332, 531, 651, 1166
SstI GAGCTC 1 cut(s) 315
StyD4I CCNGG 4 cut(s) 114, 119, 120, 369
TaaI ACNGT 9 cut(s) 107, 157, 199, 819, 847, 899, 1112, 1245, 1343
TaiI ACGT 1 cut(s) 430
TaqI TCGA 5 cut(s) 144, 616, 873, 1140, 1268
TatI WGTACW 1 cut(s) 1192
TfiI GAWTC 2 cut(s) 525, 687
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 3 cut(s) 107, 238, 386
Tsp45I GTSAC 3 cut(s) 107, 238, 386
TspGWI ACGGA 3 cut(s) 162, 308, 818
TspMI CCCGGG 1 cut(s) 120
TspRI CASTG 1 cut(s) 313
VpaK11BI GGWCC 1 cut(s) 1067
XapI RAATTY 4 cut(s) 853, 926, 1034, 1136
XmaI CCCGGG 1 cut(s) 120
XspI CTAG 5 cut(s) 260, 332, 531, 651, 1166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.