pycom12g11210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000158
Physical Location & Seq
Reverse (-)
13369215 .. 13369719
505 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g11210.2

Sequence Viewer

Length: 390 bp
ATGTTTTTTTTTTTTTACACTGGATATTTCAAACCCCCAAATGTCACATCCCGGCCCGGGCGAGACCACTTCCCCGGCCCGCTCCACCACCGTAGCACGATATTGTCCGCTTTGGGCCCCGACCACGCCCTCACGGTTTTGTTTCTGGGAACTCATACGAGAACTTCCCAATGGGTCACCCATCCTGGGAGTGCTCTCGTGCGCTACTCGCTTAACTTCGGAGTTCCCATGGAATCCGAAGCCAGTGAGCTCCCAAAAAGCCTCATGCTAGGTAGGGATGGGAATATACATATAAGGATCACTACCCTGGGCGATGTGGGACGTCACACCAAATCACTCTTAATCAAGACCTTGGATCTTATAAGGTATAAAGGCTACATAGGAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.45

Weight (kDa)

9.99

Isoelectric Point (pI)

26.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 362
AatII GACGTC 1 cut(s) 325
AccBSI CCGCTC 1 cut(s) 82
AciI CCGC 2 cut(s) 80, 108
AclWI GGATC 2 cut(s) 305, 363
AcyI GRCGYC 1 cut(s) 322
AfiI CCNNNNNNNGG 2 cut(s) 57, 186
AgsI TTSAA 1 cut(s) 31
AjnI CCWGG 2 cut(s) 184, 306
AluBI AGCT 1 cut(s) 250
AluI AGCT 1 cut(s) 250
Alw21I GWGCWC 2 cut(s) 196, 252
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 2 cut(s) 305, 363
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 3 cut(s) 53, 76, 115
ApaI GGGCCC 1 cut(s) 119
AspLEI GCGC 1 cut(s) 204
AspS9I GGNCC 4 cut(s) 54, 77, 115, 116
AsuC2I CCSGG 4 cut(s) 52, 57, 58, 75
AsuHPI GGTGA 1 cut(s) 169
AvaI CYCGRG 1 cut(s) 56
BaeGI GKGCMC 1 cut(s) 119
BanII GRGCYC 2 cut(s) 119, 252
BauI CACGAG 1 cut(s) 197
Bbv12I GWGCWC 2 cut(s) 196, 252
BccI CCATC 2 cut(s) 189, 272
BciT130I CCWGG 2 cut(s) 186, 308
BcnI CCSGG 4 cut(s) 52, 57, 58, 75
BcoDI GTCTC 1 cut(s) 57
BfaI CTAG 1 cut(s) 269
Bme1390I CCNGG 6 cut(s) 52, 57, 58, 75, 186, 308
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 4 cut(s) 54, 77, 115, 116
BmiI GGNNCC 2 cut(s) 117, 118
BmrFI CCNGG 6 cut(s) 52, 57, 58, 75, 186, 308
BpuMI CCSGG 4 cut(s) 52, 57, 58, 75
BsaHI GRCGYC 1 cut(s) 322
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 7 cut(s) 56, 73, 185, 228, 306, 307, 351
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 186
Bse1I ACTGG 2 cut(s) 25, 243
BseBI CCWGG 2 cut(s) 186, 308
BseDI CCNNGG 7 cut(s) 56, 73, 185, 228, 306, 307, 351
BseGI GGATG 3 cut(s) 47, 181, 283
BseLI CCNNNNNNNGG 2 cut(s) 57, 186
BseNI ACTGG 2 cut(s) 25, 243
BseSI GKGCMC 1 cut(s) 119
BshFI GGCC 3 cut(s) 55, 78, 117
BsiHKAI GWGCWC 2 cut(s) 196, 252
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 3 cut(s) 52, 57, 75
BslFI GGGAC 1 cut(s) 333
BslI CCNNNNNNNGG 2 cut(s) 57, 186
BsmAI GTCTC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 333
BsnI GGCC 3 cut(s) 55, 78, 117
Bso31I GGTCTC 1 cut(s) 57
BsoBI CYCGRG 1 cut(s) 56
Bsp120I GGGCCC 1 cut(s) 115
Bsp1286I GDGCHC 3 cut(s) 119, 196, 252
Bsp143I GATC 2 cut(s) 297, 355
Bsp19I CCATGG 1 cut(s) 228
BspACI CCGC 2 cut(s) 80, 108
BspANI GGCC 3 cut(s) 55, 78, 117
BspLI GGNNCC 2 cut(s) 117, 118
BspPI GGATC 2 cut(s) 305, 363
BspTNI GGTCTC 1 cut(s) 57
BsrBI CCGCTC 1 cut(s) 82
BsrI ACTGG 2 cut(s) 25, 243
BssECI CCNNGG 7 cut(s) 56, 73, 185, 228, 306, 307, 351
BssMI GATC 2 cut(s) 297, 355
BssNI GRCGYC 1 cut(s) 322
BssSI CACGAG 1 cut(s) 197
BssT1I CCWWGG 2 cut(s) 228, 351
Bst2BI CACGAG 1 cut(s) 197
Bst2UI CCWGG 2 cut(s) 186, 308
Bst4CI ACNGT 2 cut(s) 92, 136
BstACI GRCGYC 1 cut(s) 322
BstC8I GCNNGC 1 cut(s) 80
BstDSI CCRYGG 1 cut(s) 228
BstEII GGTNACC 1 cut(s) 175
BstF5I GGATG 3 cut(s) 47, 181, 283
BstHHI GCGC 1 cut(s) 204
BstKTI GATC 2 cut(s) 300, 358
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 2 cut(s) 297, 355
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstNI CCWGG 2 cut(s) 186, 308
BstPI GGTNACC 1 cut(s) 175
BstSCI CCNGG 6 cut(s) 50, 55, 56, 73, 184, 306
BstSLI GKGCMC 1 cut(s) 119
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BsuRI GGCC 3 cut(s) 55, 78, 117
BtgI CCRYGG 1 cut(s) 228
BtgZI GCGATG 1 cut(s) 327
BtsCI GGATG 3 cut(s) 47, 181, 283
BtsIMutI CAGTG 2 cut(s) 18, 250
Cac8I GCNNGC 1 cut(s) 80
CfoI GCGC 1 cut(s) 204
Cfr13I GGNCC 4 cut(s) 54, 77, 115, 116
Cfr9I CCCGGG 1 cut(s) 56
CviAII CATG 2 cut(s) 229, 265
CviJI RGCY 7 cut(s) 55, 78, 117, 242, 250, 261, 375
CviKI_1 RGCY 7 cut(s) 55, 78, 117, 242, 250, 261, 375
DpnI GATC 2 cut(s) 299, 357
DpnII GATC 2 cut(s) 297, 355
Ecl136II GAGCTC 1 cut(s) 250
Eco130I CCWWGG 2 cut(s) 228, 351
Eco24I GRGCYC 2 cut(s) 119, 252
Eco31I GGTCTC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 250
Eco88I CYCGRG 1 cut(s) 56
Eco91I GGTNACC 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 250
EcoO109I RGGNCCY 1 cut(s) 116
EcoO65I GGTNACC 1 cut(s) 175
EcoRII CCWGG 2 cut(s) 184, 306
EcoT14I CCWWGG 2 cut(s) 228, 351
EcoT38I GRGCYC 2 cut(s) 119, 252
ErhI CCWWGG 2 cut(s) 228, 351
FaeI CATG 2 cut(s) 232, 268
FaiI YATR 9 cut(s) 156, 230, 266, 287, 291, 293, 362, 369, 380
FaqI GGGAC 1 cut(s) 333
FatI CATG 2 cut(s) 228, 264
FauI CCCGC 1 cut(s) 87
FokI GGATG 3 cut(s) 34, 168, 290
FriOI GRGCYC 2 cut(s) 119, 252
FspBI CTAG 1 cut(s) 269
GlaI GCGC 1 cut(s) 203
HaeIII GGCC 3 cut(s) 55, 78, 117
HapII CCGG 3 cut(s) 52, 57, 75
HhaI GCGC 1 cut(s) 204
Hin1I GRCGYC 1 cut(s) 322
Hin1II CATG 2 cut(s) 232, 268
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HinfI GANTC 1 cut(s) 233
HpaII CCGG 3 cut(s) 52, 57, 75
HphI GGTGA 1 cut(s) 169
Hpy188I TCNGA 2 cut(s) 221, 238
Hpy188III TCNNGA 1 cut(s) 346
HpyCH4III ACNGT 2 cut(s) 92, 136
HpyCH4IV ACGT 1 cut(s) 322
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpySE526I ACGT 1 cut(s) 322
Hsp92I GRCGYC 1 cut(s) 322
Hsp92II CATG 2 cut(s) 232, 268
HspAI GCGC 1 cut(s) 202
Kzo9I GATC 2 cut(s) 297, 355
LmnI GCTCC 2 cut(s) 87, 255
MaeI CTAG 1 cut(s) 269
MaeII ACGT 1 cut(s) 322
MaeIII GTNAC 3 cut(s) 43, 175, 323
MalI GATC 2 cut(s) 299, 357
MbiI CCGCTC 1 cut(s) 82
MboI GATC 2 cut(s) 297, 355
MflI RGATCY 1 cut(s) 355
MhlI GDGCHC 3 cut(s) 119, 196, 252
MnlI CCTC 2 cut(s) 140, 272
MseI TTAA 2 cut(s) 213, 341
MslI CAYNNNNRTG 1 cut(s) 383
MspI CCGG 3 cut(s) 52, 57, 75
MspR9I CCNGG 6 cut(s) 52, 57, 58, 75, 186, 308
MvaI CCWGG 2 cut(s) 186, 308
MwoI GCNNNNNNNGC 1 cut(s) 208
NciI CCSGG 4 cut(s) 52, 57, 58, 75
NcoI CCATGG 1 cut(s) 228
NdeII GATC 2 cut(s) 297, 355
NlaIII CATG 2 cut(s) 232, 268
NlaIV GGNNCC 2 cut(s) 117, 118
NmuCI GTSAC 3 cut(s) 43, 175, 323
PasI CCCWGGG 1 cut(s) 307
PfeI GAWTC 1 cut(s) 233
PsiI TTATAA 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 252
Psp6I CCWGG 2 cut(s) 184, 306
PspEI GGTNACC 1 cut(s) 175
PspGI CCWGG 2 cut(s) 184, 306
PspN4I GGNNCC 2 cut(s) 117, 118
PspOMI GGGCCC 1 cut(s) 115
PspPI GGNCC 4 cut(s) 54, 77, 115, 116
PsuI RGATCY 1 cut(s) 355
RseI CAYNNNNRTG 1 cut(s) 383
SacI GAGCTC 1 cut(s) 252
SaqAI TTAA 2 cut(s) 213, 341
Sau3AI GATC 2 cut(s) 297, 355
Sau96I GGNCC 4 cut(s) 54, 77, 115, 116
ScrFI CCNGG 6 cut(s) 52, 57, 58, 75, 186, 308
SduI GDGCHC 3 cut(s) 119, 196, 252
SetI ASST 5 cut(s) 252, 274, 325, 353, 368
SmaI CCCGGG 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 383
SrfI GCCCGGGC 1 cut(s) 58
SsiI CCGC 2 cut(s) 80, 108
SspMI CTAG 1 cut(s) 269
SstI GAGCTC 1 cut(s) 252
StyD4I CCNGG 6 cut(s) 50, 55, 56, 73, 184, 306
StyI CCWWGG 2 cut(s) 228, 351
TaaI ACNGT 2 cut(s) 92, 136
TaiI ACGT 1 cut(s) 325
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 2 cut(s) 213, 341
Tru9I TTAA 2 cut(s) 213, 341
TscAI CASTG 2 cut(s) 25, 250
TseFI GTSAC 3 cut(s) 43, 175, 323
Tsp45I GTSAC 3 cut(s) 43, 175, 323
TspMI CCCGGG 1 cut(s) 56
TspRI CASTG 2 cut(s) 25, 250
XmaI CCCGGG 1 cut(s) 56
XspI CTAG 1 cut(s) 269
ZraI GACGTC 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.