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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1017 |
| Acc16I | TGCGCA | 1 cut(s) | 959 |
| AccBSI | CCGCTC | 2 cut(s) | 418, 694 |
| AccII | CGCG | 3 cut(s) | 322, 812, 814 |
| AclWI | GGATC | 4 cut(s) | 917, 1034, 1047, 1089 |
| AcsI | RAATTY | 2 cut(s) | 1004, 1021 |
| AcuI | CTGAAG | 1 cut(s) | 537 |
| AfaI | GTAC | 3 cut(s) | 236, 299, 359 |
| AfeI | AGCGCT | 1 cut(s) | 182 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 409, 521, 636, 637, 638, 798 |
| AgsI | TTSAA | 2 cut(s) | 26, 286 |
| AjnI | CCWGG | 3 cut(s) | 519, 601, 918 |
| AluBI | AGCT | 5 cut(s) | 577, 585, 862, 1036, 1084 |
| AluI | AGCT | 5 cut(s) | 577, 585, 862, 1036, 1084 |
| Alw21I | GWGCWC | 2 cut(s) | 587, 864 |
| Alw26I | GTCTC | 1 cut(s) | 665 |
| AlwI | GGATC | 4 cut(s) | 917, 1034, 1047, 1089 |
| Ama87I | CYCGRG | 2 cut(s) | 392, 409 |
| Aor51HI | AGCGCT | 1 cut(s) | 182 |
| AoxI | GGCC | 8 cut(s) | 389, 412, 451, 640, 665, 688, 727, 871 |
| ApaI | GGGCCC | 4 cut(s) | 416, 455, 644, 731 |
| ApoI | RAATTY | 2 cut(s) | 1004, 1021 |
| AseI | ATTAAT | 1 cut(s) | 996 |
| AspA2I | CCTAGG | 1 cut(s) | 797 |
| AspLEI | GCGC | 4 cut(s) | 183, 322, 814, 960 |
| AsuC2I | CCSGG | 5 cut(s) | 393, 394, 410, 411, 664 |
| AsuHPI | GGTGA | 3 cut(s) | 208, 504, 781 |
| AvaI | CYCGRG | 2 cut(s) | 392, 409 |
| AvaII | GGWCC | 2 cut(s) | 400, 676 |
| AvrII | CCTAGG | 1 cut(s) | 797 |
| AxyI | CCTNAGG | 1 cut(s) | 635 |
| BaeGI | GKGCMC | 4 cut(s) | 416, 455, 644, 731 |
| BamHI | GGATCC | 1 cut(s) | 1039 |
| BanII | GRGCYC | 6 cut(s) | 416, 455, 587, 644, 731, 864 |
| BauI | CACGAG | 2 cut(s) | 769, 875 |
| Bbv12I | GWGCWC | 2 cut(s) | 587, 864 |
| BccI | CCATC | 4 cut(s) | 500, 524, 801, 884 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 524, 558 |
| BciT130I | CCWGG | 3 cut(s) | 521, 603, 920 |
| BcnI | CCSGG | 5 cut(s) | 393, 394, 410, 411, 664 |
| BcoDI | GTCTC | 1 cut(s) | 665 |
| BfaI | CTAG | 4 cut(s) | 578, 758, 798, 881 |
| BfmI | CTRYAG | 2 cut(s) | 703, 943 |
| BfoI | RGCGCY | 1 cut(s) | 184 |
| BglII | AGATCT | 1 cut(s) | 371 |
| BisI | GCNGC | 1 cut(s) | 264 |
| BlnI | CCTAGG | 1 cut(s) | 797 |
| BlsI | GCNGC | 1 cut(s) | 265 |
| Bme1390I | CCNGG | 8 cut(s) | 393, 394, 410, 411, 521, 603, 664, 920 |
| Bme18I | GGWCC | 2 cut(s) | 400, 676 |
| BmeT110I | CYCGRG | 2 cut(s) | 392, 409 |
| BmiI | GGNNCC | 9 cut(s) | 414, 453, 454, 641, 642, 729, 730, 846, 1041 |
| BmrFI | CCNGG | 8 cut(s) | 393, 394, 410, 411, 521, 603, 664, 920 |
| BmsI | GCATC | 1 cut(s) | 181 |
| BpuMI | CCSGG | 5 cut(s) | 393, 394, 410, 411, 664 |
| BsaJI | CCNNGG | 8 cut(s) | 392, 409, 520, 601, 602, 797, 918, 919 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 409, 521, 636, 637, 638, 798 |
| Bse118I | RCCGGY | 1 cut(s) | 259 |
| Bse21I | CCTNAGG | 1 cut(s) | 635 |
| BseBI | CCWGG | 3 cut(s) | 521, 603, 920 |
| BseDI | CCNNGG | 8 cut(s) | 392, 409, 520, 601, 602, 797, 918, 919 |
| BseGI | GGATG | 7 cut(s) | 405, 516, 621, 659, 793, 895, 938 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 409, 521, 636, 637, 638, 798 |
| BseMII | CTCAG | 1 cut(s) | 660 |
| BseSI | GKGCMC | 4 cut(s) | 416, 455, 644, 731 |
| Bsh1236I | CGCG | 3 cut(s) | 322, 812, 814 |
| BshFI | GGCC | 8 cut(s) | 391, 414, 453, 642, 667, 690, 729, 873 |
| BsiHKAI | GWGCWC | 2 cut(s) | 587, 864 |
| BsiHKCI | CYCGRG | 2 cut(s) | 392, 409 |
| BsiSI | CCGG | 4 cut(s) | 260, 393, 410, 664 |
| BslFI | GGGAC | 2 cut(s) | 409, 498 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 409, 521, 636, 637, 638, 798 |
| BsmAI | GTCTC | 1 cut(s) | 665 |
| BsmBI | CGTCTC | 1 cut(s) | 665 |
| BsmFI | GGGAC | 2 cut(s) | 409, 498 |
| BsmI | GAATGC | 2 cut(s) | 531, 808 |
| BsnI | GGCC | 8 cut(s) | 391, 414, 453, 642, 667, 690, 729, 873 |
| BsoBI | CYCGRG | 2 cut(s) | 392, 409 |
| Bsp120I | GGGCCC | 4 cut(s) | 412, 451, 640, 727 |
| Bsp1286I | GDGCHC | 6 cut(s) | 416, 455, 587, 644, 731, 864 |
| Bsp1407I | TGTACA | 1 cut(s) | 357 |
| Bsp143I | GATC | 5 cut(s) | 198, 371, 909, 1039, 1094 |
| BspANI | GGCC | 8 cut(s) | 391, 414, 453, 642, 667, 690, 729, 873 |
| BspCNI | CTCAG | 1 cut(s) | 661 |
| BspFNI | CGCG | 3 cut(s) | 322, 812, 814 |
| BspLI | GGNNCC | 9 cut(s) | 414, 453, 454, 641, 642, 729, 730, 846, 1041 |
| BspPI | GGATC | 4 cut(s) | 917, 1034, 1047, 1089 |
| BsrBI | CCGCTC | 2 cut(s) | 418, 694 |
| BsrFI | RCCGGY | 1 cut(s) | 259 |
| BsrGI | TGTACA | 1 cut(s) | 357 |
| BssAI | RCCGGY | 1 cut(s) | 259 |
| BssECI | CCNNGG | 8 cut(s) | 392, 409, 520, 601, 602, 797, 918, 919 |
| BssMI | GATC | 5 cut(s) | 198, 371, 909, 1039, 1094 |
| BssSI | CACGAG | 2 cut(s) | 769, 875 |
| BssT1I | CCWWGG | 1 cut(s) | 797 |
| Bst2BI | CACGAG | 2 cut(s) | 769, 875 |
| Bst2UI | CCWGG | 3 cut(s) | 521, 603, 920 |
| Bst4CI | ACNGT | 4 cut(s) | 428, 472, 704, 748 |
| BstAUI | TGTACA | 1 cut(s) | 357 |
| BstC8I | GCNNGC | 3 cut(s) | 261, 416, 692 |
| BstDEI | CTNAG | 3 cut(s) | 635, 669, 685 |
| BstEII | GGTNACC | 2 cut(s) | 510, 787 |
| BstF5I | GGATG | 7 cut(s) | 405, 516, 621, 659, 793, 895, 938 |
| BstFNI | CGCG | 3 cut(s) | 322, 812, 814 |
| BstH2I | RGCGCY | 1 cut(s) | 184 |
| BstHHI | GCGC | 4 cut(s) | 183, 322, 814, 960 |
| BstKTI | GATC | 5 cut(s) | 201, 374, 912, 1042, 1097 |
| BstMAI | GTCTC | 1 cut(s) | 665 |
| BstMBI | GATC | 5 cut(s) | 198, 371, 909, 1039, 1094 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 180, 420, 429, 696, 705, 820 |
| BstNI | CCWGG | 3 cut(s) | 521, 603, 920 |
| BstNSI | RCATGY | 1 cut(s) | 129 |
| BstPI | GGTNACC | 2 cut(s) | 510, 787 |
| BstSCI | CCNGG | 8 cut(s) | 391, 392, 408, 409, 519, 601, 662, 918 |
| BstSFI | CTRYAG | 2 cut(s) | 703, 943 |
| BstSLI | GKGCMC | 4 cut(s) | 416, 455, 644, 731 |
| BstUI | CGCG | 3 cut(s) | 322, 812, 814 |
| BstX2I | RGATCY | 3 cut(s) | 371, 1039, 1094 |
| BstYI | RGATCY | 3 cut(s) | 371, 1039, 1094 |
| Bsu36I | CCTNAGG | 1 cut(s) | 635 |
| BsuRI | GGCC | 8 cut(s) | 391, 414, 453, 642, 667, 690, 729, 873 |
| BtgZI | GCGATG | 2 cut(s) | 622, 939 |
| BtsCI | GGATG | 7 cut(s) | 405, 516, 621, 659, 793, 895, 938 |
| BtsIMutI | CAGTG | 1 cut(s) | 700 |
| Cac8I | GCNNGC | 3 cut(s) | 261, 416, 692 |
| CfoI | GCGC | 4 cut(s) | 183, 322, 814, 960 |
| Cfr10I | RCCGGY | 1 cut(s) | 259 |
| Cfr9I | CCCGGG | 2 cut(s) | 392, 409 |
| Csp6I | GTAC | 3 cut(s) | 235, 298, 358 |
| CviAII | CATG | 3 cut(s) | 126, 155, 317 |
| CviQI | GTAC | 3 cut(s) | 235, 298, 358 |
| DdeI | CTNAG | 3 cut(s) | 635, 669, 685 |
| DpnI | GATC | 5 cut(s) | 200, 373, 911, 1041, 1096 |
| DpnII | GATC | 5 cut(s) | 198, 371, 909, 1039, 1094 |
| DraI | TTTAAA | 1 cut(s) | 339 |
| EciI | GGCGGA | 2 cut(s) | 410, 686 |
| Ecl136II | GAGCTC | 2 cut(s) | 585, 862 |
| Eco130I | CCWWGG | 1 cut(s) | 797 |
| Eco147I | AGGCCT | 1 cut(s) | 873 |
| Eco24I | GRGCYC | 6 cut(s) | 416, 455, 587, 644, 731, 864 |
| Eco47I | GGWCC | 2 cut(s) | 400, 676 |
| Eco47III | AGCGCT | 1 cut(s) | 182 |
| Eco53kI | GAGCTC | 2 cut(s) | 585, 862 |
| Eco57I | CTGAAG | 1 cut(s) | 537 |
| Eco81I | CCTNAGG | 1 cut(s) | 635 |
| Eco88I | CYCGRG | 2 cut(s) | 392, 409 |
| Eco91I | GGTNACC | 2 cut(s) | 510, 787 |
| EcoICRI | GAGCTC | 2 cut(s) | 585, 862 |
| EcoO109I | RGGNCCY | 3 cut(s) | 452, 640, 728 |
| EcoO65I | GGTNACC | 2 cut(s) | 510, 787 |
| EcoRII | CCWGG | 3 cut(s) | 519, 601, 918 |
| EcoT14I | CCWWGG | 1 cut(s) | 797 |
| EcoT38I | GRGCYC | 6 cut(s) | 416, 455, 587, 644, 731, 864 |
| ErhI | CCWWGG | 1 cut(s) | 797 |
| Esp3I | CGTCTC | 1 cut(s) | 665 |
| FaeI | CATG | 3 cut(s) | 129, 158, 320 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 898, 930 |
| FaqI | GGGAC | 2 cut(s) | 409, 498 |
| FatI | CATG | 3 cut(s) | 125, 154, 316 |
| FauI | CCCGC | 3 cut(s) | 323, 423, 699 |
| Fnu4HI | GCNGC | 1 cut(s) | 264 |
| FokI | GGATG | 7 cut(s) | 392, 503, 628, 646, 780, 902, 945 |
| FriOI | GRGCYC | 6 cut(s) | 416, 455, 587, 644, 731, 864 |
| Fsp4HI | GCNGC | 1 cut(s) | 264 |
| FspBI | CTAG | 4 cut(s) | 578, 758, 798, 881 |
| FspI | TGCGCA | 1 cut(s) | 959 |
| GlaI | GCGC | 4 cut(s) | 182, 321, 813, 959 |
| GluI | GCNGC | 1 cut(s) | 264 |
| HaeII | RGCGCY | 1 cut(s) | 184 |
| HaeIII | GGCC | 8 cut(s) | 391, 414, 453, 642, 667, 690, 729, 873 |
| HapII | CCGG | 4 cut(s) | 260, 393, 410, 664 |
| HhaI | GCGC | 4 cut(s) | 183, 322, 814, 960 |
| Hin1II | CATG | 3 cut(s) | 129, 158, 320 |
| Hin6I | GCGC | 4 cut(s) | 181, 320, 812, 958 |
| HinP1I | GCGC | 4 cut(s) | 181, 320, 812, 958 |
| HinfI | GANTC | 2 cut(s) | 486, 568 |
| HpaII | CCGG | 4 cut(s) | 260, 393, 410, 664 |
| HphI | GGTGA | 3 cut(s) | 208, 504, 781 |
| Hpy166II | GTNNAC | 1 cut(s) | 300 |
| Hpy188I | TCNGA | 3 cut(s) | 556, 573, 833 |
| Hpy188III | TCNNGA | 2 cut(s) | 503, 1043 |
| Hpy8I | GTNNAC | 1 cut(s) | 300 |
| HpyAV | CCTTC | 1 cut(s) | 280 |
| HpyCH4III | ACNGT | 4 cut(s) | 428, 472, 704, 748 |
| HpyCH4IV | ACGT | 2 cut(s) | 218, 537 |
| HpyCH4V | TGCA | 1 cut(s) | 174 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 180, 420, 429, 696, 705, 820 |
| HpyF3I | CTNAG | 3 cut(s) | 635, 669, 685 |
| HpySE526I | ACGT | 2 cut(s) | 218, 537 |
| Hsp92II | CATG | 3 cut(s) | 129, 158, 320 |
| HspAI | GCGC | 4 cut(s) | 181, 320, 812, 958 |
| KroI | GCCGGC | 1 cut(s) | 259 |
| KroNI | GCCGGC | 1 cut(s) | 261 |
| Kzo9I | GATC | 5 cut(s) | 198, 371, 909, 1039, 1094 |
| LmnI | GCTCC | 5 cut(s) | 188, 423, 590, 699, 867 |
| LweI | GCATC | 1 cut(s) | 181 |
| MaeI | CTAG | 4 cut(s) | 578, 758, 798, 881 |
| MaeII | ACGT | 2 cut(s) | 218, 537 |
| MaeIII | GTNAC | 8 cut(s) | 91, 379, 510, 538, 618, 655, 787, 935 |
| MalI | GATC | 5 cut(s) | 200, 373, 911, 1041, 1096 |
| MbiI | CCGCTC | 2 cut(s) | 418, 694 |
| MboI | GATC | 5 cut(s) | 198, 371, 909, 1039, 1094 |
| MboII | GAAGA | 1 cut(s) | 1104 |
| MflI | RGATCY | 3 cut(s) | 371, 1039, 1094 |
| MhlI | GDGCHC | 6 cut(s) | 416, 455, 587, 644, 731, 864 |
| MluCI | AATT | 8 cut(s) | 28, 953, 993, 997, 1004, 1021, 1046, 1074 |
| MlyI | GAGTC | 1 cut(s) | 480 |
| MnlI | CCTC | 4 cut(s) | 57, 476, 752, 884 |
| MroNI | GCCGGC | 1 cut(s) | 259 |
| MseI | TTAA | 9 cut(s) | 99, 338, 548, 825, 951, 996, 1058, 1080, 1088 |
| MslI | CAYNNNNRTG | 1 cut(s) | 159 |
| MspA1I | CMGCKG | 1 cut(s) | 1036 |
| MspI | CCGG | 4 cut(s) | 260, 393, 410, 664 |
| MspR9I | CCNGG | 8 cut(s) | 393, 394, 410, 411, 521, 603, 664, 920 |
| Mva1269I | GAATGC | 2 cut(s) | 531, 808 |
| MvaI | CCWGG | 3 cut(s) | 521, 603, 920 |
| MvnI | CGCG | 3 cut(s) | 322, 812, 814 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 180, 420, 429, 696, 705, 820 |
| NaeI | GCCGGC | 1 cut(s) | 261 |
| NciI | CCSGG | 5 cut(s) | 393, 394, 410, 411, 664 |
| NdeII | GATC | 5 cut(s) | 198, 371, 909, 1039, 1094 |
| NgoMIV | GCCGGC | 1 cut(s) | 259 |
| NlaIII | CATG | 3 cut(s) | 129, 158, 320 |
| NlaIV | GGNNCC | 9 cut(s) | 414, 453, 454, 641, 642, 729, 730, 846, 1041 |
| NmuCI | GTSAC | 4 cut(s) | 379, 510, 655, 787 |
| NsbI | TGCGCA | 1 cut(s) | 959 |
| NspI | RCATGY | 1 cut(s) | 129 |
| PasI | CCCWGGG | 2 cut(s) | 602, 919 |
| PceI | AGGCCT | 1 cut(s) | 873 |
| PctI | GAATGC | 2 cut(s) | 531, 808 |
| PdiI | GCCGGC | 1 cut(s) | 261 |
| PfeI | GAWTC | 1 cut(s) | 568 |
| PkrI | GCNGC | 1 cut(s) | 265 |
| PleI | GAGTC | 1 cut(s) | 480 |
| PpsI | GAGTC | 1 cut(s) | 480 |
| PshBI | ATTAAT | 1 cut(s) | 996 |
| PsiI | TTATAA | 1 cut(s) | 1017 |
| Psp124BI | GAGCTC | 2 cut(s) | 587, 864 |
| Psp6I | CCWGG | 3 cut(s) | 519, 601, 918 |
| PspEI | GGTNACC | 2 cut(s) | 510, 787 |
| PspGI | CCWGG | 3 cut(s) | 519, 601, 918 |
| PspN4I | GGNNCC | 9 cut(s) | 414, 453, 454, 641, 642, 729, 730, 846, 1041 |
| PspOMI | GGGCCC | 4 cut(s) | 412, 451, 640, 727 |
| PsuI | RGATCY | 3 cut(s) | 371, 1039, 1094 |
| PvuII | CAGCTG | 1 cut(s) | 1036 |
| RsaI | GTAC | 3 cut(s) | 236, 299, 359 |
| RsaNI | GTAC | 3 cut(s) | 235, 298, 358 |
| RseI | CAYNNNNRTG | 1 cut(s) | 159 |
| SacI | GAGCTC | 2 cut(s) | 587, 864 |
| SaqAI | TTAA | 9 cut(s) | 99, 338, 548, 825, 951, 996, 1058, 1080, 1088 |
| SatI | GCNGC | 1 cut(s) | 264 |
| Sau3AI | GATC | 5 cut(s) | 198, 371, 909, 1039, 1094 |
| SchI | GAGTC | 1 cut(s) | 480 |
| ScrFI | CCNGG | 8 cut(s) | 393, 394, 410, 411, 521, 603, 664, 920 |
| SduI | GDGCHC | 6 cut(s) | 416, 455, 587, 644, 731, 864 |
| SfaNI | GCATC | 1 cut(s) | 181 |
| SfcI | CTRYAG | 2 cut(s) | 703, 943 |
| SinI | GGWCC | 2 cut(s) | 400, 676 |
| SmaI | CCCGGG | 2 cut(s) | 394, 411 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 159 |
| Sse9I | AATT | 8 cut(s) | 28, 953, 993, 997, 1004, 1021, 1046, 1074 |
| SseBI | AGGCCT | 1 cut(s) | 873 |
| SspI | AATATT | 1 cut(s) | 18 |
| SspMI | CTAG | 4 cut(s) | 578, 758, 798, 881 |
| SstI | GAGCTC | 2 cut(s) | 587, 864 |
| StuI | AGGCCT | 1 cut(s) | 873 |
| StyD4I | CCNGG | 8 cut(s) | 391, 392, 408, 409, 519, 601, 662, 918 |
| StyI | CCWWGG | 1 cut(s) | 797 |
| TaaI | ACNGT | 4 cut(s) | 428, 472, 704, 748 |
| TaiI | ACGT | 2 cut(s) | 221, 540 |
| TasI | AATT | 8 cut(s) | 28, 953, 993, 997, 1004, 1021, 1046, 1074 |
| TatI | WGTACW | 1 cut(s) | 357 |
| TauI | GCSGC | 1 cut(s) | 266 |
| TfiI | GAWTC | 1 cut(s) | 568 |
| Tru1I | TTAA | 9 cut(s) | 99, 338, 548, 825, 951, 996, 1058, 1080, 1088 |
| Tru9I | TTAA | 9 cut(s) | 99, 338, 548, 825, 951, 996, 1058, 1080, 1088 |
| TscAI | CASTG | 1 cut(s) | 707 |
| TseFI | GTSAC | 4 cut(s) | 379, 510, 655, 787 |
| Tsp45I | GTSAC | 4 cut(s) | 379, 510, 655, 787 |
| TspDTI | ATGAA | 3 cut(s) | 258, 305, 967 |
| TspGWI | ACGGA | 5 cut(s) | 175, 413, 580, 689, 857 |
| TspMI | CCCGGG | 2 cut(s) | 392, 409 |
| TspRI | CASTG | 1 cut(s) | 707 |
| VpaK11BI | GGWCC | 2 cut(s) | 400, 676 |
| VspI | ATTAAT | 1 cut(s) | 996 |
| XapI | RAATTY | 2 cut(s) | 1004, 1021 |
| XceI | RCATGY | 1 cut(s) | 129 |
| XmaI | CCCGGG | 2 cut(s) | 392, 409 |
| XmaJI | CCTAGG | 1 cut(s) | 797 |
| XspI | CTAG | 4 cut(s) | 578, 758, 798, 881 |