pycom03g19100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000158
Physical Location & Seq
Forward (+)
19836292 .. 19837525
1234 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g19100.7

Sequence Viewer

Length: 873 bp
ATGAATGACAATAACTACTACCACGTTTTTGTTGTGACATATGTTCTAATACATATTAATGTCACATCCTGGCCCGGGGCGGATCACTTCCCGGGCCCGCTCCACTACCGTAGCACGATATTGTCCGCTTTGGGCTTACCATTCCCTCACGGTTTTGTTTTTGGGAACTCACGAGCAACTTCCCAGTGGGTCACCCATCATGGGATTGCTCTAGCCCCATTCTCGCTTAACTTCGGAGTTCCTACGGAACCCGAAGCCAGTGAGCTCCCAAAAGGCCTCGTGCTAGGTAGGGATGAGAATATACATTTAAGGATCACTCCCCTGGGCGATGTGGGATGTTACATAGAACGATCTTTCCTAATAGTTCTCAAGTCTATTCTCCACCCTCTTTCTCTCCTGCCACACCCCTTAGTTAAATATAGGCCACAACACGGTATCAGCATGCTCTTCATGCTTTGGATTTTATTGAATTCATATGCTTTTATTGATTCAATTTATTTTTCTTGTGTGGAACGTGATACAAGCATCAAACTAGTTCACCAATATTATCACGCAATCAGGTTCTTCCAAACACAACGATTCACCATAATGCATGACCCAACTTTACGTTTTTCGAATTCTAAATTCTACATAAATTTTGTATGCATTATACTCATAATTTTAAATTATAAAAAATTAGGGTTTTTCGATCCAAACGTGCGACGGTTCGAAGCCGCGCCGCTTAGCAAGCTGCCAACAGCTTGTGTCTGCAAGGCAGGCCGAGCCACGAGCCATAGAGCCACATCCAATGAGCCAAGCAAGCCTGCAACTCTGCTTGAAAACCTAGAACAATGTCATATGGCGTTGTCCCTGTCCTTAAACTCAAACCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

32.94

Weight (kDa)

9.0

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 669
AccBSI CCGCTC 1 cut(s) 100
AccII CGCG 1 cut(s) 716
AciI CCGC 5 cut(s) 80, 98, 126, 714, 719
AclWI GGATC 3 cut(s) 90, 320, 683
AcsI RAATTY 4 cut(s) 469, 616, 623, 634
AfiI CCNNNNNNNGG 3 cut(s) 75, 201, 431
AgsI TTSAA 3 cut(s) 469, 492, 818
AhlI ACTAGT 1 cut(s) 532
AjnI CCWGG 2 cut(s) 68, 321
AloI GAACNNNNNNTCC 2 cut(s) 339, 371
AluBI AGCT 3 cut(s) 265, 730, 740
AluI AGCT 3 cut(s) 265, 730, 740
Alw21I GWGCWC 1 cut(s) 267
AlwI GGATC 3 cut(s) 90, 320, 683
Ama87I CYCGRG 2 cut(s) 74, 91
AoxI GGCC 5 cut(s) 71, 94, 274, 422, 757
ApaI GGGCCC 1 cut(s) 98
ApeKI GCWGC 1 cut(s) 730
ApoI RAATTY 4 cut(s) 469, 616, 623, 634
AseI ATTAAT 1 cut(s) 57
AspLEI GCGC 1 cut(s) 718
AspS9I GGNCC 3 cut(s) 72, 94, 95
AsuC2I CCSGG 4 cut(s) 75, 76, 92, 93
AsuHPI GGTGA 3 cut(s) 184, 530, 574
AsuII TTCGAA 2 cut(s) 614, 708
AvaI CYCGRG 2 cut(s) 74, 91
BaeGI GKGCMC 1 cut(s) 98
BanII GRGCYC 2 cut(s) 98, 267
BauI CACGAG 3 cut(s) 171, 278, 766
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 1 cut(s) 717
BccI CCATC 1 cut(s) 204
BciT130I CCWGG 2 cut(s) 70, 323
BcnI CCSGG 4 cut(s) 75, 76, 92, 93
BcuI ACTAGT 1 cut(s) 532
BfaI CTAG 4 cut(s) 212, 284, 533, 824
BisI GCNGC 3 cut(s) 714, 719, 731
BlpI GCTNAGC 1 cut(s) 722
BlsI GCNGC 3 cut(s) 715, 720, 732
Bme1390I CCNGG 6 cut(s) 70, 75, 76, 92, 93, 323
BmeT110I CYCGRG 2 cut(s) 74, 91
BmgT120I GGNCC 3 cut(s) 72, 94, 95
BmiI GGNNCC 2 cut(s) 96, 249
BmrFI CCNGG 6 cut(s) 70, 75, 76, 92, 93, 323
BmrI ACTGGG 1 cut(s) 178
BmsI GCATC 1 cut(s) 534
BmuI ACTGGG 1 cut(s) 178
Bpu1102I GCTNAGC 1 cut(s) 722
Bpu14I TTCGAA 2 cut(s) 614, 708
BpuEI CTTGAG 1 cut(s) 353
BpuMI CCSGG 4 cut(s) 75, 76, 92, 93
BsaJI CCNNGG 5 cut(s) 74, 75, 91, 321, 322
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 201, 431
Bse1I ACTGG 2 cut(s) 184, 258
BseBI CCWGG 2 cut(s) 70, 323
BseDI CCNNGG 5 cut(s) 74, 75, 91, 321, 322
BseGI GGATG 4 cut(s) 65, 298, 341, 782
BseLI CCNNNNNNNGG 3 cut(s) 75, 201, 431
BseNI ACTGG 2 cut(s) 184, 258
BseSI GKGCMC 1 cut(s) 98
BseXI GCAGC 1 cut(s) 717
Bsh1236I CGCG 1 cut(s) 716
BshFI GGCC 5 cut(s) 73, 96, 276, 424, 759
BsiHKAI GWGCWC 1 cut(s) 267
BsiHKCI CYCGRG 2 cut(s) 74, 91
BsiSI CCGG 2 cut(s) 75, 92
BslFI GGGAC 1 cut(s) 832
BslI CCNNNNNNNGG 3 cut(s) 75, 201, 431
BsmFI GGGAC 1 cut(s) 832
BsnI GGCC 5 cut(s) 73, 96, 276, 424, 759
BsoBI CYCGRG 2 cut(s) 74, 91
Bsp119I TTCGAA 2 cut(s) 614, 708
Bsp120I GGGCCC 1 cut(s) 94
Bsp1286I GDGCHC 2 cut(s) 98, 267
Bsp143I GATC 4 cut(s) 82, 312, 350, 688
Bsp1720I GCTNAGC 1 cut(s) 722
BspACI CCGC 5 cut(s) 80, 98, 126, 714, 719
BspANI GGCC 5 cut(s) 73, 96, 276, 424, 759
BspFNI CGCG 1 cut(s) 716
BspLI GGNNCC 2 cut(s) 96, 249
BspPI GGATC 3 cut(s) 90, 320, 683
BspQI GCTCTTC 1 cut(s) 452
BspT104I TTCGAA 2 cut(s) 614, 708
BsrBI CCGCTC 1 cut(s) 100
BsrI ACTGG 2 cut(s) 184, 258
BssECI CCNNGG 5 cut(s) 74, 75, 91, 321, 322
BssMI GATC 4 cut(s) 82, 312, 350, 688
BssSI CACGAG 3 cut(s) 171, 278, 766
Bst2BI CACGAG 3 cut(s) 171, 278, 766
Bst2UI CCWGG 2 cut(s) 70, 323
Bst4CI ACNGT 4 cut(s) 110, 152, 434, 705
Bst6I CTCTTC 1 cut(s) 452
BstBI TTCGAA 2 cut(s) 614, 708
BstC8I GCNNGC 6 cut(s) 98, 443, 728, 757, 800, 804
BstDEI CTNAG 2 cut(s) 409, 722
BstEII GGTNACC 1 cut(s) 190
BstF5I GGATG 4 cut(s) 65, 298, 341, 782
BstFNI CGCG 1 cut(s) 716
BstHHI GCGC 1 cut(s) 718
BstKTI GATC 4 cut(s) 85, 315, 353, 691
BstMBI GATC 4 cut(s) 82, 312, 350, 688
BstMWI GCNNNNNNNGC 5 cut(s) 451, 727, 756, 761, 799
BstNI CCWGG 2 cut(s) 70, 323
BstNSI RCATGY 1 cut(s) 445
BstPI GGTNACC 1 cut(s) 190
BstSCI CCNGG 6 cut(s) 68, 73, 74, 90, 91, 321
BstSLI GKGCMC 1 cut(s) 98
BstUI CGCG 1 cut(s) 716
BstV1I GCAGC 1 cut(s) 717
BsuRI GGCC 5 cut(s) 73, 96, 276, 424, 759
BtgZI GCGATG 1 cut(s) 342
BtsCI GGATG 4 cut(s) 65, 298, 341, 782
BtsIMutI CAGTG 2 cut(s) 191, 265
Cac8I GCNNGC 6 cut(s) 98, 443, 728, 757, 800, 804
CfoI GCGC 1 cut(s) 718
Cfr13I GGNCC 3 cut(s) 72, 94, 95
Cfr9I CCCGGG 2 cut(s) 74, 91
CviAII CATG 5 cut(s) 200, 442, 451, 593, 870
DdeI CTNAG 2 cut(s) 409, 722
DpnI GATC 4 cut(s) 84, 314, 352, 690
DpnII GATC 4 cut(s) 82, 312, 350, 688
DraI TTTAAA 1 cut(s) 663
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
EciI GGCGGA 1 cut(s) 95
Ecl136II GAGCTC 1 cut(s) 265
Eco147I AGGCCT 1 cut(s) 276
Eco24I GRGCYC 2 cut(s) 98, 267
Eco53kI GAGCTC 1 cut(s) 265
Eco88I CYCGRG 2 cut(s) 74, 91
Eco91I GGTNACC 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 265
EcoO65I GGTNACC 1 cut(s) 190
EcoRI GAATTC 2 cut(s) 469, 616
EcoRII CCWGG 2 cut(s) 68, 321
EcoT22I ATGCAT 2 cut(s) 594, 647
EcoT38I GRGCYC 2 cut(s) 98, 267
FaeI CATG 5 cut(s) 203, 445, 454, 596, 873
FaqI GGGAC 1 cut(s) 832
FatI CATG 5 cut(s) 199, 441, 450, 592, 869
FauI CCCGC 1 cut(s) 105
FauNDI CATATG 3 cut(s) 40, 475, 837
Fnu4HI GCNGC 3 cut(s) 714, 719, 731
FokI GGATG 4 cut(s) 52, 305, 348, 769
FriOI GRGCYC 2 cut(s) 98, 267
Fsp4HI GCNGC 3 cut(s) 714, 719, 731
FspBI CTAG 4 cut(s) 212, 284, 533, 824
GlaI GCGC 1 cut(s) 717
GluI GCNGC 3 cut(s) 714, 719, 731
HaeIII GGCC 5 cut(s) 73, 96, 276, 424, 759
HapII CCGG 2 cut(s) 75, 92
HhaI GCGC 1 cut(s) 718
Hin1II CATG 5 cut(s) 203, 445, 454, 596, 873
Hin6I GCGC 1 cut(s) 716
HinP1I GCGC 1 cut(s) 716
HinfI GANTC 2 cut(s) 488, 579
HpaII CCGG 2 cut(s) 75, 92
HphI GGTGA 3 cut(s) 184, 530, 574
Hpy166II GTNNAC 1 cut(s) 538
Hpy188I TCNGA 1 cut(s) 236
Hpy188III TCNNGA 1 cut(s) 171
Hpy8I GTNNAC 1 cut(s) 538
Hpy99I CGWCG 1 cut(s) 705
HpyCH4III ACNGT 4 cut(s) 110, 152, 434, 705
HpyCH4IV ACGT 4 cut(s) 24, 514, 607, 696
HpyCH4V TGCA 4 cut(s) 592, 645, 750, 806
HpyF10VI GCNNNNNNNGC 5 cut(s) 451, 727, 756, 761, 799
HpyF3I CTNAG 2 cut(s) 409, 722
HpySE526I ACGT 4 cut(s) 24, 514, 607, 696
Hsp92II CATG 5 cut(s) 203, 445, 454, 596, 873
HspAI GCGC 1 cut(s) 716
Kzo9I GATC 4 cut(s) 82, 312, 350, 688
LguI GCTCTTC 1 cut(s) 452
LmnI GCTCC 2 cut(s) 105, 270
Lsp1109I GCAGC 1 cut(s) 717
LweI GCATC 1 cut(s) 534
MaeI CTAG 4 cut(s) 212, 284, 533, 824
MaeII ACGT 4 cut(s) 24, 514, 607, 696
MaeIII GTNAC 4 cut(s) 34, 61, 190, 338
MalI GATC 4 cut(s) 84, 314, 352, 690
MbiI CCGCTC 1 cut(s) 100
MboI GATC 4 cut(s) 82, 312, 350, 688
MboII GAAGA 2 cut(s) 439, 556
MhlI GDGCHC 2 cut(s) 98, 267
MluCI AATT 8 cut(s) 469, 492, 616, 623, 634, 657, 664, 674
MnlI CCTC 3 cut(s) 156, 287, 396
Mph1103I ATGCAT 2 cut(s) 594, 647
MseI TTAA 6 cut(s) 57, 228, 308, 414, 662, 857
MslI CAYNNNNRTG 2 cut(s) 57, 587
MspI CCGG 2 cut(s) 75, 92
MspR9I CCNGG 6 cut(s) 70, 75, 76, 92, 93, 323
MvaI CCWGG 2 cut(s) 70, 323
MvnI CGCG 1 cut(s) 716
MwoI GCNNNNNNNGC 5 cut(s) 451, 727, 756, 761, 799
NciI CCSGG 4 cut(s) 75, 76, 92, 93
NdeI CATATG 3 cut(s) 40, 475, 837
NdeII GATC 4 cut(s) 82, 312, 350, 688
NlaIII CATG 5 cut(s) 203, 445, 454, 596, 873
NlaIV GGNNCC 2 cut(s) 96, 249
NmeAIII GCCGAG 1 cut(s) 785
NmuCI GTSAC 3 cut(s) 34, 61, 190
NsiI ATGCAT 2 cut(s) 594, 647
NspI RCATGY 1 cut(s) 445
NspV TTCGAA 2 cut(s) 614, 708
PaeI GCATGC 1 cut(s) 445
PasI CCCWGGG 1 cut(s) 322
PceI AGGCCT 1 cut(s) 276
PciSI GCTCTTC 1 cut(s) 452
PcsI WCGNNNNNNNCGW 1 cut(s) 693
PfeI GAWTC 2 cut(s) 488, 579
PkrI GCNGC 3 cut(s) 715, 720, 732
PshBI ATTAAT 1 cut(s) 57
PsiI TTATAA 1 cut(s) 669
Psp124BI GAGCTC 1 cut(s) 267
Psp6I CCWGG 2 cut(s) 68, 321
PspEI GGTNACC 1 cut(s) 190
PspGI CCWGG 2 cut(s) 68, 321
PspN4I GGNNCC 2 cut(s) 96, 249
PspOMI GGGCCC 1 cut(s) 94
PspPI GGNCC 3 cut(s) 72, 94, 95
RseI CAYNNNNRTG 2 cut(s) 57, 587
SacI GAGCTC 1 cut(s) 267
SapI GCTCTTC 1 cut(s) 452
SaqAI TTAA 6 cut(s) 57, 228, 308, 414, 662, 857
SatI GCNGC 3 cut(s) 714, 719, 731
Sau3AI GATC 4 cut(s) 82, 312, 350, 688
Sau96I GGNCC 3 cut(s) 72, 94, 95
ScrFI CCNGG 6 cut(s) 70, 75, 76, 92, 93, 323
SduI GDGCHC 2 cut(s) 98, 267
SfaNI GCATC 1 cut(s) 534
SfuI TTCGAA 2 cut(s) 614, 708
SmaI CCCGGG 2 cut(s) 76, 93
SmiMI CAYNNNNRTG 2 cut(s) 57, 587
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
SpeI ACTAGT 1 cut(s) 532
SphI GCATGC 1 cut(s) 445
Sse9I AATT 8 cut(s) 469, 492, 616, 623, 634, 657, 664, 674
SseBI AGGCCT 1 cut(s) 276
SsiI CCGC 5 cut(s) 80, 98, 126, 714, 719
SspI AATATT 1 cut(s) 545
SspMI CTAG 4 cut(s) 212, 284, 533, 824
SstI GAGCTC 1 cut(s) 267
StuI AGGCCT 1 cut(s) 276
StyD4I CCNGG 6 cut(s) 68, 73, 74, 90, 91, 321
TaaI ACNGT 4 cut(s) 110, 152, 434, 705
TaiI ACGT 4 cut(s) 27, 517, 610, 699
TaqI TCGA 3 cut(s) 614, 687, 708
TasI AATT 8 cut(s) 469, 492, 616, 623, 634, 657, 664, 674
TauI GCSGC 2 cut(s) 716, 721
TfiI GAWTC 2 cut(s) 488, 579
Tru1I TTAA 6 cut(s) 57, 228, 308, 414, 662, 857
Tru9I TTAA 6 cut(s) 57, 228, 308, 414, 662, 857
TscAI CASTG 2 cut(s) 191, 265
TseFI GTSAC 3 cut(s) 34, 61, 190
TseI GCWGC 1 cut(s) 730
Tsp45I GTSAC 3 cut(s) 34, 61, 190
TspDTI ATGAA 3 cut(s) 17, 439, 462
TspGWI ACGGA 1 cut(s) 260
TspMI CCCGGG 2 cut(s) 74, 91
TspRI CASTG 2 cut(s) 191, 265
VspI ATTAAT 1 cut(s) 57
XapI RAATTY 4 cut(s) 469, 616, 623, 634
XceI RCATGY 1 cut(s) 445
XmaI CCCGGG 2 cut(s) 74, 91
XspI CTAG 4 cut(s) 212, 284, 533, 824
Zsp2I ATGCAT 2 cut(s) 594, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.