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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 2393, 2758 |
| Acc36I | ACCTGC | 2 cut(s) | 786, 2092 |
| AccB1I | GGYRCC | 1 cut(s) | 3411 |
| AccII | CGCG | 9 cut(s) | 1970, 3229, 3231, 3233, 3235, 3237, 3239, 3368, 3921 |
| AciI | CCGC | 6 cut(s) | 2087, 2090, 2786, 2888, 3379, 3384 |
| AclI | AACGTT | 2 cut(s) | 1311, 3105 |
| AclWI | GGATC | 6 cut(s) | 1911, 2004, 2289, 2584, 3394, 3407 |
| AcoI | YGGCCR | 2 cut(s) | 2998, 3657 |
| AcuI | CTGAAG | 1 cut(s) | 4308 |
| AcvI | CACGTG | 2 cut(s) | 2991, 3937 |
| AcyI | GRCGYC | 3 cut(s) | 2390, 2755, 2958 |
| AfaI | GTAC | 7 cut(s) | 1200, 1278, 2384, 2532, 3508, 3532, 4415 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 2040, 2041, 2042, 2074, 2086, 2211, 2478 |
| AflII | CTTAAG | 1 cut(s) | 3500 |
| AflIII | ACRYGT | 5 cut(s) | 634, 709, 3934, 3936, 4018 |
| AhlI | ACTAGT | 1 cut(s) | 2734 |
| AjnI | CCWGG | 6 cut(s) | 2005, 2073, 2290, 2983, 3159, 3659 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1686, 1718 |
| AleI | CACNNNNGTG | 1 cut(s) | 4289 |
| Alw21I | GWGCWC | 2 cut(s) | 709, 3351 |
| Alw26I | GTCTC | 7 cut(s) | 31, 2686, 2725, 3128, 3160, 3750, 3796 |
| Alw44I | GTGCAC | 1 cut(s) | 705 |
| AlwI | GGATC | 6 cut(s) | 1911, 2004, 2289, 2584, 3394, 3407 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 4070 |
| Ama87I | CYCGRG | 4 cut(s) | 126, 1617, 2101, 2663 |
| AoxI | GGCC | 9 cut(s) | 362, 2044, 2076, 2998, 3071, 3657, 3758, 3829, 3942 |
| ApaI | GGGCCC | 1 cut(s) | 2048 |
| ApaLI | GTGCAC | 1 cut(s) | 705 |
| ApeKI | GCWGC | 5 cut(s) | 918, 2468, 4070, 4406, 4579 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1539, 1571, 3451, 3483 |
| AspLEI | GCGC | 8 cut(s) | 1970, 3229, 3231, 3233, 3235, 3237, 3239, 3921 |
| AspS9I | GGNCC | 7 cut(s) | 363, 2044, 2045, 2077, 2441, 3758, 3943 |
| AsuC2I | CCSGG | 5 cut(s) | 1618, 1619, 1906, 2102, 2103 |
| AsuII | TTCGAA | 1 cut(s) | 1364 |
| AvaI | CYCGRG | 4 cut(s) | 126, 1617, 2101, 2663 |
| AvaII | GGWCC | 1 cut(s) | 2441 |
| AxyI | CCTNAGG | 1 cut(s) | 2039 |
| BaeGI | GKGCMC | 4 cut(s) | 272, 709, 2048, 4369 |
| BalI | TGGCCA | 2 cut(s) | 3000, 3659 |
| BamHI | GGATCC | 1 cut(s) | 3399 |
| BanI | GGYRCC | 1 cut(s) | 3411 |
| BanII | GRGCYC | 4 cut(s) | 2048, 2108, 3351, 4263 |
| BauI | CACGAG | 4 cut(s) | 156, 2181, 2394, 2618 |
| BbrPI | CACGTG | 2 cut(s) | 2991, 3937 |
| Bbv12I | GWGCWC | 2 cut(s) | 709, 3351 |
| BbvI | GCAGC | 5 cut(s) | 930, 2480, 4057, 4393, 4566 |
| BceAI | ACGGC | 6 cut(s) | 538, 687, 839, 1070, 2894, 2971 |
| BciT130I | CCWGG | 6 cut(s) | 2007, 2075, 2292, 2985, 3161, 3661 |
| BciVI | GTATCC | 2 cut(s) | 3045, 3917 |
| BcnI | CCSGG | 5 cut(s) | 1618, 1619, 1906, 2102, 2103 |
| BcoDI | GTCTC | 7 cut(s) | 31, 2686, 2725, 3128, 3160, 3750, 3796 |
| BcuI | ACTAGT | 1 cut(s) | 2734 |
| BfrI | CTTAAG | 1 cut(s) | 3500 |
| BfuAI | ACCTGC | 2 cut(s) | 786, 2092 |
| BfuI | GTATCC | 2 cut(s) | 3045, 3917 |
| BisI | GCNGC | 6 cut(s) | 919, 2088, 2469, 4071, 4407, 4580 |
| BlpI | GCTNAGC | 1 cut(s) | 3391 |
| BlsI | GCNGC | 6 cut(s) | 920, 2089, 2470, 4072, 4408, 4581 |
| Bme18I | GGWCC | 1 cut(s) | 2441 |
| BmeT110I | CYCGRG | 4 cut(s) | 126, 1617, 2101, 2663 |
| BmgT120I | GGNCC | 7 cut(s) | 363, 2044, 2045, 2077, 2441, 3758, 3943 |
| BmiI | GGNNCC | 8 cut(s) | 2045, 2046, 2259, 2661, 2895, 3401, 3413, 3445 |
| BmrI | ACTGGG | 2 cut(s) | 2188, 3612 |
| BmsI | GCATC | 6 cut(s) | 502, 672, 1118, 2396, 3297, 3370 |
| BmuI | ACTGGG | 2 cut(s) | 2188, 3612 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3125, 3157 |
| BpmI | CTGGAG | 1 cut(s) | 2530 |
| Bpu10I | CCTNAGC | 2 cut(s) | 144, 232 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3391 |
| Bpu14I | TTCGAA | 1 cut(s) | 1364 |
| BpuEI | CTTGAG | 3 cut(s) | 1190, 2504, 3732 |
| BpuMI | CCSGG | 5 cut(s) | 1618, 1619, 1906, 2102, 2103 |
| Bsa29I | ATCGAT | 1 cut(s) | 4555 |
| BsaAI | YACGTR | 4 cut(s) | 1280, 2991, 3487, 3937 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2838 |
| BsaHI | GRCGYC | 3 cut(s) | 2390, 2755, 2958 |
| BsaI | GGTCTC | 1 cut(s) | 3750 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1514, 1544, 3639, 3669 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 2040, 2041, 2042, 2074, 2086, 2211, 2478 |
| Bse1I | ACTGG | 3 cut(s) | 2194, 3060, 3618 |
| Bse21I | CCTNAGG | 1 cut(s) | 2039 |
| Bse3DI | GCAATG | 3 cut(s) | 4073, 4112, 4301 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2838 |
| BseBI | CCWGG | 6 cut(s) | 2007, 2075, 2292, 2985, 3161, 3661 |
| BseCI | ATCGAT | 1 cut(s) | 4555 |
| BseGI | GGATG | 9 cut(s) | 320, 796, 1158, 1716, 2025, 2310, 2494, 3972, 3978 |
| BseJI | GATNNNNATC | 1 cut(s) | 2838 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 2040, 2041, 2042, 2074, 2086, 2211, 2478 |
| BseMI | GCAATG | 3 cut(s) | 4073, 4112, 4301 |
| BseMII | CTCAG | 4 cut(s) | 1646, 3405, 3596, 4523 |
| BseNI | ACTGG | 3 cut(s) | 2194, 3060, 3618 |
| BsePI | GCGCGC | 5 cut(s) | 3227, 3229, 3231, 3233, 3235 |
| BseRI | GAGGAG | 3 cut(s) | 1145, 2490, 3891 |
| BseSI | GKGCMC | 4 cut(s) | 272, 709, 2048, 4369 |
| BseXI | GCAGC | 5 cut(s) | 930, 2480, 4057, 4393, 4566 |
| Bsh1236I | CGCG | 9 cut(s) | 1970, 3229, 3231, 3233, 3235, 3237, 3239, 3368, 3921 |
| BshFI | GGCC | 9 cut(s) | 364, 2046, 2078, 3000, 3073, 3659, 3760, 3831, 3944 |
| BshNI | GGYRCC | 1 cut(s) | 3411 |
| BshVI | ATCGAT | 1 cut(s) | 4555 |
| BsiHKAI | GWGCWC | 2 cut(s) | 709, 3351 |
| BsiHKCI | CYCGRG | 4 cut(s) | 126, 1617, 2101, 2663 |
| BsiSI | CCGG | 4 cut(s) | 1618, 1906, 2102, 2897 |
| BsiWI | CGTACG | 2 cut(s) | 2530, 4413 |
| BslFI | GGGAC | 4 cut(s) | 362, 1077, 3034, 4403 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 2040, 2041, 2042, 2074, 2086, 2211, 2478 |
| BsmAI | GTCTC | 7 cut(s) | 31, 2686, 2725, 3128, 3160, 3750, 3796 |
| BsmBI | CGTCTC | 3 cut(s) | 31, 3128, 3796 |
| BsmFI | GGGAC | 4 cut(s) | 362, 1077, 3034, 4403 |
| BsmI | GAATGC | 5 cut(s) | 449, 591, 935, 1004, 1553 |
| BsnI | GGCC | 9 cut(s) | 364, 2046, 2078, 3000, 3073, 3659, 3760, 3831, 3944 |
| Bso31I | GGTCTC | 1 cut(s) | 3750 |
| BsoBI | CYCGRG | 4 cut(s) | 126, 1617, 2101, 2663 |
| Bsp119I | TTCGAA | 1 cut(s) | 1364 |
| Bsp120I | GGGCCC | 1 cut(s) | 2044 |
| Bsp1286I | GDGCHC | 7 cut(s) | 272, 709, 2048, 2108, 3351, 4263, 4369 |
| Bsp1407I | TGTACA | 1 cut(s) | 1198 |
| Bsp143I | GATC | 9 cut(s) | 1587, 1916, 1996, 2281, 2534, 2576, 3369, 3399, 3489 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3391 |
| Bsp68I | TCGCGA | 1 cut(s) | 3368 |
| BspACI | CCGC | 6 cut(s) | 2087, 2090, 2786, 2888, 3379, 3384 |
| BspANI | GGCC | 9 cut(s) | 364, 2046, 2078, 3000, 3073, 3659, 3760, 3831, 3944 |
| BspCNI | CTCAG | 4 cut(s) | 1647, 3404, 3595, 4522 |
| BspDI | ATCGAT | 1 cut(s) | 4555 |
| BspFNI | CGCG | 9 cut(s) | 1970, 3229, 3231, 3233, 3235, 3237, 3239, 3368, 3921 |
| BspHI | TCATGA | 1 cut(s) | 4425 |
| BspLI | GGNNCC | 8 cut(s) | 2045, 2046, 2259, 2661, 2895, 3401, 3413, 3445 |
| BspMI | ACCTGC | 2 cut(s) | 786, 2092 |
| BspPI | GGATC | 6 cut(s) | 1911, 2004, 2289, 2584, 3394, 3407 |
| BspT104I | TTCGAA | 1 cut(s) | 1364 |
| BspT107I | GGYRCC | 1 cut(s) | 3411 |
| BspTI | CTTAAG | 1 cut(s) | 3500 |
| BspTNI | GGTCTC | 1 cut(s) | 3750 |
| BsrDI | GCAATG | 3 cut(s) | 4073, 4112, 4301 |
| BsrGI | TGTACA | 1 cut(s) | 1198 |
| BsrI | ACTGG | 3 cut(s) | 2194, 3060, 3618 |
| BssHII | GCGCGC | 5 cut(s) | 3227, 3229, 3231, 3233, 3235 |
| BssMI | GATC | 9 cut(s) | 1587, 1916, 1996, 2281, 2534, 2576, 3369, 3399, 3489 |
| BssNI | GRCGYC | 3 cut(s) | 2390, 2755, 2958 |
| BssSI | CACGAG | 4 cut(s) | 156, 2181, 2394, 2618 |
| BssT1I | CCWWGG | 3 cut(s) | 1702, 2995, 3606 |
| Bst2BI | CACGAG | 4 cut(s) | 156, 2181, 2394, 2618 |
| Bst2UI | CCWGG | 6 cut(s) | 2007, 2075, 2292, 2985, 3161, 3661 |
| Bst4CI | ACNGT | 8 cut(s) | 1445, 1809, 2120, 2162, 2774, 3197, 4358, 4494 |
| Bst6I | CTCTTC | 5 cut(s) | 437, 1288, 1293, 3556, 3768 |
| BstACI | GRCGYC | 3 cut(s) | 2390, 2755, 2958 |
| BstAFI | CTTAAG | 1 cut(s) | 3500 |
| BstAUI | TGTACA | 1 cut(s) | 1198 |
| BstBAI | YACGTR | 4 cut(s) | 1280, 2991, 3487, 3937 |
| BstBI | TTCGAA | 1 cut(s) | 1364 |
| BstDSI | CCRYGG | 1 cut(s) | 855 |
| BstEII | GGTNACC | 1 cut(s) | 2200 |
| BstF5I | GGATG | 9 cut(s) | 320, 796, 1158, 1716, 2025, 2310, 2494, 3972, 3978 |
| BstFNI | CGCG | 9 cut(s) | 1970, 3229, 3231, 3233, 3235, 3237, 3239, 3368, 3921 |
| BstHHI | GCGC | 8 cut(s) | 1970, 3229, 3231, 3233, 3235, 3237, 3239, 3921 |
| BstKTI | GATC | 9 cut(s) | 1590, 1919, 1999, 2284, 2537, 2579, 3372, 3402, 3492 |
| BstMAI | GTCTC | 7 cut(s) | 31, 2686, 2725, 3128, 3160, 3750, 3796 |
| BstMBI | GATC | 9 cut(s) | 1587, 1916, 1996, 2281, 2534, 2576, 3369, 3399, 3489 |
| BstNI | CCWGG | 6 cut(s) | 2007, 2075, 2292, 2985, 3161, 3661 |
| BstPI | GGTNACC | 1 cut(s) | 2200 |
| BstSLI | GKGCMC | 4 cut(s) | 272, 709, 2048, 4369 |
| BstSNI | TACGTA | 1 cut(s) | 1280 |
| BstUI | CGCG | 9 cut(s) | 1970, 3229, 3231, 3233, 3235, 3237, 3239, 3368, 3921 |
| BstV1I | GCAGC | 5 cut(s) | 930, 2480, 4057, 4393, 4566 |
| BstX2I | RGATCY | 1 cut(s) | 3399 |
| BstYI | RGATCY | 1 cut(s) | 3399 |
| Bsu15I | ATCGAT | 1 cut(s) | 4555 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2039 |
| BsuI | GTATCC | 2 cut(s) | 3045, 3917 |
| BsuRI | GGCC | 9 cut(s) | 364, 2046, 2078, 3000, 3073, 3659, 3760, 3831, 3944 |
| BsuTUI | ATCGAT | 1 cut(s) | 4555 |
| BtgI | CCRYGG | 1 cut(s) | 855 |
| BtgZI | GCGATG | 2 cut(s) | 2026, 2311 |
| BtsCI | GGATG | 9 cut(s) | 320, 796, 1158, 1716, 2025, 2310, 2494, 3972, 3978 |
| BtsI | GCAGTG | 3 cut(s) | 4124, 4211, 4506 |
| BtsIMutI | CAGTG | 8 cut(s) | 2201, 2983, 3202, 4124, 4211, 4284, 4354, 4506 |
| BtuMI | TCGCGA | 1 cut(s) | 3368 |
| BveI | ACCTGC | 2 cut(s) | 786, 2092 |
| CaiI | CAGNNNCTG | 1 cut(s) | 4070 |
| CciI | TCATGA | 1 cut(s) | 4425 |
| CfoI | GCGC | 8 cut(s) | 1970, 3229, 3231, 3233, 3235, 3237, 3239, 3921 |
| Cfr13I | GGNCC | 7 cut(s) | 363, 2044, 2045, 2077, 2441, 3758, 3943 |
| Cfr9I | CCCGGG | 2 cut(s) | 1617, 2101 |
| ClaI | ATCGAT | 1 cut(s) | 4555 |
| CseI | GACGC | 5 cut(s) | 2947, 3346, 3910, 4076, 4412 |
| Csp6I | GTAC | 7 cut(s) | 1199, 1277, 2383, 2531, 3507, 3531, 4414 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3579, 3614 |
| CviQI | GTAC | 7 cut(s) | 1199, 1277, 2383, 2531, 3507, 3531, 4414 |
| DpnI | GATC | 9 cut(s) | 1589, 1918, 1998, 2283, 2536, 2578, 3371, 3401, 3491 |
| DpnII | GATC | 9 cut(s) | 1587, 1916, 1996, 2281, 2534, 2576, 3369, 3399, 3489 |
| DraI | TTTAAA | 6 cut(s) | 727, 1255, 3097, 3264, 3280, 4603 |
| EaeI | YGGCCR | 2 cut(s) | 2998, 3657 |
| Eam1104I | CTCTTC | 5 cut(s) | 437, 1288, 1293, 3556, 3768 |
| EarI | CTCTTC | 5 cut(s) | 437, 1288, 1293, 3556, 3768 |
| Ecl136II | GAGCTC | 1 cut(s) | 3349 |
| Eco105I | TACGTA | 1 cut(s) | 1280 |
| Eco130I | CCWWGG | 3 cut(s) | 1702, 2995, 3606 |
| Eco24I | GRGCYC | 4 cut(s) | 2048, 2108, 3351, 4263 |
| Eco31I | GGTCTC | 1 cut(s) | 3750 |
| Eco32I | GATATC | 1 cut(s) | 4506 |
| Eco47I | GGWCC | 1 cut(s) | 2441 |
| Eco53kI | GAGCTC | 1 cut(s) | 3349 |
| Eco57I | CTGAAG | 1 cut(s) | 4308 |
| Eco72I | CACGTG | 2 cut(s) | 2991, 3937 |
| Eco81I | CCTNAGG | 1 cut(s) | 2039 |
| Eco88I | CYCGRG | 4 cut(s) | 126, 1617, 2101, 2663 |
| Eco91I | GGTNACC | 1 cut(s) | 2200 |
| EcoICRI | GAGCTC | 1 cut(s) | 3349 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2044 |
| EcoO65I | GGTNACC | 1 cut(s) | 2200 |
| EcoRI | GAATTC | 1 cut(s) | 4276 |
| EcoRII | CCWGG | 6 cut(s) | 2005, 2073, 2290, 2983, 3159, 3659 |
| EcoRV | GATATC | 1 cut(s) | 4506 |
| EcoT14I | CCWWGG | 3 cut(s) | 1702, 2995, 3606 |
| EcoT22I | ATGCAT | 7 cut(s) | 252, 451, 495, 593, 665, 830, 937 |
| EcoT38I | GRGCYC | 4 cut(s) | 2048, 2108, 3351, 4263 |
| ErhI | CCWWGG | 3 cut(s) | 1702, 2995, 3606 |
| Esp3I | CGTCTC | 3 cut(s) | 31, 3128, 3796 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1686, 1718 |
| FaqI | GGGAC | 4 cut(s) | 362, 1077, 3034, 4403 |
| FauI | CCCGC | 1 cut(s) | 3386 |
| Fnu4HI | GCNGC | 6 cut(s) | 919, 2088, 2469, 4071, 4407, 4580 |
| FokI | GGATG | 9 cut(s) | 327, 783, 1145, 1703, 2032, 2317, 2481, 3965, 3979 |
| FriOI | GRGCYC | 4 cut(s) | 2048, 2108, 3351, 4263 |
| Fsp4HI | GCNGC | 6 cut(s) | 919, 2088, 2469, 4071, 4407, 4580 |
| GlaI | GCGC | 8 cut(s) | 1969, 3228, 3230, 3232, 3234, 3236, 3238, 3920 |
| GluI | GCNGC | 6 cut(s) | 919, 2088, 2469, 4071, 4407, 4580 |
| GsuI | CTGGAG | 1 cut(s) | 2530 |
| HaeIII | GGCC | 9 cut(s) | 364, 2046, 2078, 3000, 3073, 3659, 3760, 3831, 3944 |
| HapII | CCGG | 4 cut(s) | 1618, 1906, 2102, 2897 |
| HgaI | GACGC | 5 cut(s) | 2947, 3346, 3910, 4076, 4412 |
| HhaI | GCGC | 8 cut(s) | 1970, 3229, 3231, 3233, 3235, 3237, 3239, 3921 |
| Hin1I | GRCGYC | 3 cut(s) | 2390, 2755, 2958 |
| Hin6I | GCGC | 8 cut(s) | 1968, 3227, 3229, 3231, 3233, 3235, 3237, 3919 |
| HinP1I | GCGC | 8 cut(s) | 1968, 3227, 3229, 3231, 3233, 3235, 3237, 3919 |
| HincII | GTYRAC | 4 cut(s) | 1558, 2934, 3336, 4016 |
| HindII | GTYRAC | 4 cut(s) | 1558, 2934, 3336, 4016 |
| HindIII | AAGCTT | 2 cut(s) | 1789, 3686 |
| HpaII | CCGG | 4 cut(s) | 1618, 1906, 2102, 2897 |
| Hpy166II | GTNNAC | 7 cut(s) | 707, 1558, 2095, 2654, 2934, 3336, 4016 |
| Hpy188I | TCNGA | 9 cut(s) | 2246, 2539, 2760, 2831, 3145, 3554, 3585, 4066, 4512 |
| Hpy188III | TCNNGA | 7 cut(s) | 2181, 2394, 2512, 3367, 4091, 4130, 4426 |
| Hpy8I | GTNNAC | 7 cut(s) | 707, 1558, 2095, 2654, 2934, 3336, 4016 |
| Hpy99I | CGWCG | 4 cut(s) | 2062, 2392, 2760, 3475 |
| HpyAV | CCTTC | 8 cut(s) | 44, 576, 1128, 2239, 2561, 2911, 3646, 3857 |
| HpyCH4III | ACNGT | 8 cut(s) | 1445, 1809, 2120, 2162, 2774, 3197, 4358, 4494 |
| Hsp92I | GRCGYC | 3 cut(s) | 2390, 2755, 2958 |
| HspAI | GCGC | 8 cut(s) | 1968, 3227, 3229, 3231, 3233, 3235, 3237, 3919 |
| Kzo9I | GATC | 9 cut(s) | 1587, 1916, 1996, 2281, 2534, 2576, 3369, 3399, 3489 |
| LmnI | GCTCC | 6 cut(s) | 237, 304, 2115, 2899, 3647, 4439 |
| Lsp1109I | GCAGC | 5 cut(s) | 930, 2480, 4057, 4393, 4566 |
| LweI | GCATC | 6 cut(s) | 502, 672, 1118, 2396, 3297, 3370 |
| MalI | GATC | 9 cut(s) | 1589, 1918, 1998, 2283, 2536, 2578, 3371, 3401, 3491 |
| MauBI | CGCGCGCG | 4 cut(s) | 3229, 3231, 3233, 3235 |
| MboI | GATC | 9 cut(s) | 1587, 1916, 1996, 2281, 2534, 2576, 3369, 3399, 3489 |
| MfeI | CAATTG | 3 cut(s) | 1940, 2318, 3767 |
| MflI | RGATCY | 1 cut(s) | 3399 |
| MhlI | GDGCHC | 7 cut(s) | 272, 709, 2048, 2108, 3351, 4263, 4369 |
| MlsI | TGGCCA | 2 cut(s) | 3000, 3659 |
| MluNI | TGGCCA | 2 cut(s) | 3000, 3659 |
| MlyI | GAGTC | 7 cut(s) | 1099, 1807, 2431, 2607, 2630, 2688, 3892 |
| MmeI | TCCRAC | 8 cut(s) | 27, 600, 1200, 1317, 1388, 2738, 3006, 3471 |
| Mox20I | TGGCCA | 2 cut(s) | 3000, 3659 |
| Mph1103I | ATGCAT | 7 cut(s) | 252, 451, 495, 593, 665, 830, 937 |
| MscI | TGGCCA | 2 cut(s) | 3000, 3659 |
| MslI | CAYNNNNRTG | 7 cut(s) | 458, 2398, 3129, 3195, 4117, 4289, 4545 |
| Msp20I | TGGCCA | 2 cut(s) | 3000, 3659 |
| MspA1I | CMGCKG | 1 cut(s) | 2786 |
| MspCI | CTTAAG | 1 cut(s) | 3500 |
| MspI | CCGG | 4 cut(s) | 1618, 1906, 2102, 2897 |
| MunI | CAATTG | 3 cut(s) | 1940, 2318, 3767 |
| Mva1269I | GAATGC | 5 cut(s) | 449, 591, 935, 1004, 1553 |
| MvaI | CCWGG | 6 cut(s) | 2007, 2075, 2292, 2985, 3161, 3661 |
| MvnI | CGCG | 9 cut(s) | 1970, 3229, 3231, 3233, 3235, 3237, 3239, 3368, 3921 |
| NciI | CCSGG | 5 cut(s) | 1618, 1619, 1906, 2102, 2103 |
| NdeII | GATC | 9 cut(s) | 1587, 1916, 1996, 2281, 2534, 2576, 3369, 3399, 3489 |
| NlaIV | GGNNCC | 8 cut(s) | 2045, 2046, 2259, 2661, 2895, 3401, 3413, 3445 |
| NruI | TCGCGA | 1 cut(s) | 3368 |
| NsiI | ATGCAT | 7 cut(s) | 252, 451, 495, 593, 665, 830, 937 |
| NspV | TTCGAA | 1 cut(s) | 1364 |
| OliI | CACNNNNGTG | 1 cut(s) | 4289 |
| PaeR7I | CTCGAG | 1 cut(s) | 126 |
| PagI | TCATGA | 1 cut(s) | 4425 |
| PasI | CCCWGGG | 2 cut(s) | 2006, 2291 |
| PauI | GCGCGC | 5 cut(s) | 3227, 3229, 3231, 3233, 3235 |
| PciI | ACATGT | 3 cut(s) | 634, 709, 4018 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 1551, 2401, 4104 |
| PctI | GAATGC | 5 cut(s) | 449, 591, 935, 1004, 1553 |
| Pfl23II | CGTACG | 2 cut(s) | 2530, 4413 |
| PflFI | GACNNNGTC | 2 cut(s) | 2957, 3807 |
| PkrI | GCNGC | 6 cut(s) | 920, 2089, 2470, 4072, 4408, 4581 |
| PleI | GAGTC | 7 cut(s) | 1098, 1806, 2430, 2607, 2629, 2688, 3892 |
| PmaCI | CACGTG | 2 cut(s) | 2991, 3937 |
| PmlI | CACGTG | 2 cut(s) | 2991, 3937 |
| PpsI | GAGTC | 7 cut(s) | 1098, 1806, 2430, 2607, 2629, 2688, 3892 |
| Ppu21I | YACGTR | 4 cut(s) | 1280, 2991, 3487, 3937 |
| PscI | ACATGT | 3 cut(s) | 634, 709, 4018 |
| Psp124BI | GAGCTC | 1 cut(s) | 3351 |
| Psp1406I | AACGTT | 2 cut(s) | 1311, 3105 |
| Psp6I | CCWGG | 6 cut(s) | 2005, 2073, 2290, 2983, 3159, 3659 |
| PspCI | CACGTG | 2 cut(s) | 2991, 3937 |
| PspEI | GGTNACC | 1 cut(s) | 2200 |
| PspGI | CCWGG | 6 cut(s) | 2005, 2073, 2290, 2983, 3159, 3659 |
| PspLI | CGTACG | 2 cut(s) | 2530, 4413 |
| PspN4I | GGNNCC | 8 cut(s) | 2045, 2046, 2259, 2661, 2895, 3401, 3413, 3445 |
| PspOMI | GGGCCC | 1 cut(s) | 2044 |
| PspPI | GGNCC | 7 cut(s) | 363, 2044, 2045, 2077, 2441, 3758, 3943 |
| PspXI | VCTCGAGB | 1 cut(s) | 126 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1905, 1937 |
| PstNI | CAGNNNCTG | 1 cut(s) | 4070 |
| PsuI | RGATCY | 1 cut(s) | 3399 |
| PsyI | GACNNNGTC | 2 cut(s) | 2957, 3807 |
| PteI | GCGCGC | 5 cut(s) | 3227, 3229, 3231, 3233, 3235 |
| RruI | TCGCGA | 1 cut(s) | 3368 |
| RsaI | GTAC | 7 cut(s) | 1200, 1278, 2384, 2532, 3508, 3532, 4415 |
| RsaNI | GTAC | 7 cut(s) | 1199, 1277, 2383, 2531, 3507, 3531, 4414 |
| RseI | CAYNNNNRTG | 7 cut(s) | 458, 2398, 3129, 3195, 4117, 4289, 4545 |
| SacI | GAGCTC | 1 cut(s) | 3351 |
| SatI | GCNGC | 6 cut(s) | 919, 2088, 2469, 4071, 4407, 4580 |
| Sau3AI | GATC | 9 cut(s) | 1587, 1916, 1996, 2281, 2534, 2576, 3369, 3399, 3489 |
| Sau96I | GGNCC | 7 cut(s) | 363, 2044, 2045, 2077, 2441, 3758, 3943 |
| SchI | GAGTC | 7 cut(s) | 1099, 1807, 2431, 2607, 2630, 2688, 3892 |
| SduI | GDGCHC | 7 cut(s) | 272, 709, 2048, 2108, 3351, 4263, 4369 |
| SfaNI | GCATC | 6 cut(s) | 502, 672, 1118, 2396, 3297, 3370 |
| Sfr274I | CTCGAG | 1 cut(s) | 126 |
| SfuI | TTCGAA | 1 cut(s) | 1364 |
| SinI | GGWCC | 1 cut(s) | 2441 |
| SlaI | CTCGAG | 1 cut(s) | 126 |
| SmaI | CCCGGG | 2 cut(s) | 1619, 2103 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 458, 2398, 3129, 3195, 4117, 4289, 4545 |
| SmlI | CTYRAG | 5 cut(s) | 126, 1205, 2483, 3500, 3747 |
| SmoI | CTYRAG | 5 cut(s) | 126, 1205, 2483, 3500, 3747 |
| SnaBI | TACGTA | 1 cut(s) | 1280 |
| SpeI | ACTAGT | 1 cut(s) | 2734 |
| SsiI | CCGC | 6 cut(s) | 2087, 2090, 2786, 2888, 3379, 3384 |
| SspI | AATATT | 1 cut(s) | 2926 |
| SstI | GAGCTC | 1 cut(s) | 3351 |
| StyI | CCWWGG | 3 cut(s) | 1702, 2995, 3606 |
| TaaI | ACNGT | 8 cut(s) | 1445, 1809, 2120, 2162, 2774, 3197, 4358, 4494 |
| TaqI | TCGA | 9 cut(s) | 127, 1364, 1643, 2387, 2404, 2513, 2579, 2769, 4555 |
| TatI | WGTACW | 2 cut(s) | 1198, 2382 |
| TauI | GCSGC | 1 cut(s) | 2090 |
| TscAI | CASTG | 8 cut(s) | 2201, 2983, 3202, 4124, 4211, 4291, 4361, 4506 |
| TseI | GCWGC | 5 cut(s) | 918, 2468, 4070, 4406, 4579 |
| TspGWI | ACGGA | 6 cut(s) | 22, 2270, 2518, 2589, 2962, 3328 |
| TspMI | CCCGGG | 2 cut(s) | 1617, 2101 |
| TspRI | CASTG | 8 cut(s) | 2201, 2983, 3202, 4124, 4211, 4291, 4361, 4506 |
| Tth111I | GACNNNGTC | 2 cut(s) | 2957, 3807 |
| Vha464I | CTTAAG | 1 cut(s) | 3500 |
| VneI | GTGCAC | 1 cut(s) | 705 |
| VpaK11BI | GGWCC | 1 cut(s) | 2441 |
| XhoI | CTCGAG | 1 cut(s) | 126 |
| XmaI | CCCGGG | 2 cut(s) | 1617, 2101 |
| ZraI | GACGTC | 2 cut(s) | 2391, 2756 |
| Zsp2I | ATGCAT | 7 cut(s) | 252, 451, 495, 593, 665, 830, 937 |